MC01g1216 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g1216
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DUF295 domain-containing protein
Location	MC01: 17299650 .. 17300034 (-)
RNA-Seq Expression	MC01g1216
Synteny	MC01g1216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCTGCAAGTCAGACCGCCGCCATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCGATCATCGGAAAACGCCTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCTGAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTCTTCTGGCGCGGCAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACGATATGTTTTGGAAGGAAGTG

mRNA sequence

TCCTCTGCAAGTCAGACCGCCGCCATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCGATCATCGGAAAACGCCTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTTCTGGCGCGGCAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACGATATGTTTTGGAAGGAAGTG

Coding sequence (CDS)

TCCTCTGCAAGTCAGACCGCCGCCATGGACGACAGCCGTGTACGGTGGTCCGATCTCCCTCCCGAGCTTTGGCCGATCATCGGAAAACGCCTCGAAACCTACATCGACATAGTCTGGCGCGCTTCTATTCCTCCTTTCAACGCCATTTCCCCTCTTTTACCTCTCGACCTCCCTTCTCCGGTCTTCAACGACACTGACACATTACTTATCCGACGGATAATCTATCGCCTCAGTCCTCTCGATCGCCATGAAACTTCAAACTCTGCTGCTTCTTCTTTCTGGCGCGGCAAGGTGGAGAGTACAAAGCTAGGTAAAATGCGTTATCTGCATCCACTTTCTACTTGCTATGCATACAACAACGATATGTTTTGGAAGGAAGTG

Protein sequence

SSASQTAAMDDSRVRWSDLPPELWPIIGKRLETYIDIVWRASIPPFNAISPLLPLDLPSPVFNDTDTLLIRRIIYRLSPLDRHETSNSAASSFWRGKVESTKLGKMRYLHPLSTCYAYNNDMFWKEV

Homology

[Close]

BLAST of MC01g1216 vs. NCBI nr
Match: XP_016899202.1 (PREDICTED: putative F-box protein At1g65770 [Cucumis melo] >KAA0025628.1 putative F-box protein [Cucumis melo var. makuwa] >TYK12503.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 8.60e-51
Identity = 95/144 (65.97%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHET--------SNSAASSF-----WRGKVESTKLG 127
           VF   + TD  LIRRIIYRLSPLD H+T        S+S++SS+     W  KVESTKLG
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEGWLAKVESTKLG 120

[Close]

BLAST of MC01g1216 vs. NCBI nr
Match: XP_038881861.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 175 bits (443), Expect = 3.27e-50
Identity = 96/149 (64.43%), Postives = 108/149 (72.48%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+T+IDI+        WRAS+PPFNAISPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTHIDILRFRSVCRSWRASLPPFNAISPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHETSNSAASSF------------------WRGKVE 127
           VF   + TD  LIRRIIYRLSPL   +TS+SA+SS                   W  KVE
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLHHRQTSDSASSSSSSSSSSSSSSSSSCAAEGWLAKVE 120

[Close]

BLAST of MC01g1216 vs. NCBI nr
Match: XP_004134837.2 (putative F-box protein At1g65770 [Cucumis sativus] >KGN48969.1 hypothetical protein Csa_003175 [Cucumis sativus])

HSP 1 Score: 174 bits (440), Expect = 7.18e-50
Identity = 95/147 (64.63%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHET----------SNSAASSF------WRGKVEST 127
           VF   + TD  LIRRIIYRLSPLD H+T          S+S++SSF      W  KVEST
Sbjct: 61  VFAADHLTDAYLIRRIIYRLSPLDHHQTFDFASSSSSSSSSSSSSFSCPAEGWLAKVEST 120

[Close]

BLAST of MC01g1216 vs. NCBI nr
Match: XP_023518907.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (417), Expect = 1.65e-46
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           MDDSRV+WSDLPPE+ PIIGK LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNVVSSLLPLDLPSP 60

Query: 69  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSF-----WRGKVESTKLGKMRYLHPL 127
           +F     TD LLIRR+IYRLSPLD   +S+SA+SS      W  KVESTKLG MR+LHPL
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPL 120

[Close]

BLAST of MC01g1216 vs. NCBI nr
Match: KAG6594746.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (416), Expect = 2.32e-46
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           MDDSRV+WSDLPPE+ PIIGK LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 69  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSF-----WRGKVESTKLGKMRYLHPL 127
           +F     TD LLIRR+IYRLSPLD   +S+SA+SS      W  KVESTKLG MR+LHPL
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPL 120

[Close]

BLAST of MC01g1216 vs. ExPASy TrEMBL
Match: A0A5A7SHJ7 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00810 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 4.16e-51
Identity = 95/144 (65.97%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHET--------SNSAASSF-----WRGKVESTKLG 127
           VF   + TD  LIRRIIYRLSPLD H+T        S+S++SS+     W  KVESTKLG
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEGWLAKVESTKLG 120

[Close]

BLAST of MC01g1216 vs. ExPASy TrEMBL
Match: A0A1S4DT77 (putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 4.16e-51
Identity = 95/144 (65.97%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHET--------SNSAASSF-----WRGKVESTKLG 127
           VF   + TD  LIRRIIYRLSPLD H+T        S+S++SS+     W  KVESTKLG
Sbjct: 61  VFAADHLTDAFLIRRIIYRLSPLDHHKTFSFASSSTSSSSSSSYCAAEGWLAKVESTKLG 120

[Close]

BLAST of MC01g1216 vs. ExPASy TrEMBL
Match: A0A0A0KJJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 3.48e-50
Identity = 95/147 (64.63%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           M+DSRVRWSDLPPELWPIIGKRL+TYID++        WRAS+PPFNA+SPLLPLDLPSP
Sbjct: 1   MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSWRASLPPFNAVSPLLPLDLPSP 60

Query: 69  VF---NDTDTLLIRRIIYRLSPLDRHET----------SNSAASSF------WRGKVEST 127
           VF   + TD  LIRRIIYRLSPLD H+T          S+S++SSF      W  KVEST
Sbjct: 61  VFAADHLTDAYLIRRIIYRLSPLDHHQTFDFASSSSSSSSSSSSSFSCPAEGWLAKVEST 120

[Close]

BLAST of MC01g1216 vs. ExPASy TrEMBL
Match: A0A6J1KNW7 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497348 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.12e-46
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           MDDSRV+WSDLPPE+ PIIGK LETYID++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIDVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 69  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSF-----WRGKVESTKLGKMRYLHPL 127
           +F     TD LLIRR+IYRLSPLD   +S+SA+SS      W  KVESTKLG MR+LHPL
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPL 120

[Close]

BLAST of MC01g1216 vs. ExPASy TrEMBL
Match: A0A6J1EGF3 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433939 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 4.41e-46
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 9   MDDSRVRWSDLPPELWPIIGKRLETYIDIV--------WRASIPPFNAISPLLPLDLPSP 68
           MDDSRV+WSDLPPE+ PIIGK LETYI+++        WRAS+PPFN +S LLPLDLPSP
Sbjct: 1   MDDSRVQWSDLPPEILPIIGKSLETYIEVLRFRSVCRSWRASLPPFNIVSSLLPLDLPSP 60

Query: 69  VFND---TDTLLIRRIIYRLSPLDRHETSNSAASSF-----WRGKVESTKLGKMRYLHPL 127
           +F     TD LLIRR+IYRLSPLD   +S+SA+SS      W  KVESTKLG MR+LHPL
Sbjct: 61  IFTADHLTDALLIRRVIYRLSPLDHQHSSDSASSSSFAAEGWLAKVESTKLGTMRFLHPL 120

The following BLAST results are available for this feature:

BLAST of MC01g1216 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g1216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899202.1	8.60e-51	65.97	PREDICTED: putative F-box protein At1g65770 [Cucumis melo] >KAA0025628.1 putativ...	[more]
XP_038881861.1	3.27e-50	64.43	putative F-box protein At1g65770 [Benincasa hispida]	[more]
XP_004134837.2	7.18e-50	64.63	putative F-box protein At1g65770 [Cucumis sativus] >KGN48969.1 hypothetical prot...	[more]
XP_023518907.1	1.65e-46	63.97	putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6594746.1	2.32e-46	63.97	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MC01g1216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHJ7	4.16e-51	65.97	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S4DT77	4.16e-51	65.97	putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV...	[more]
A0A0A0KJJ1	3.48e-50	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1	[more]
A0A6J1KNW7	1.12e-46	63.97	putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EGF3	4.41e-46	63.24	putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MC01g1216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47123	F-BOX PROTEIN SKIP23	coord: 8..115
None	No IPR available	PANTHER	PTHR47123:SF6	ASCORBIC ACID MANNOSE PATHWAY REGULATOR-RELATED	coord: 8..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g1216.1	MC01g1216.1	mRNA