MC01g0513 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0513
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-binding protein S1FA-like
Location	MC01: 11554202 .. 11554417 (-)
RNA-Seq Expression	MC01g0513
Synteny	MC01g0513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGGGAAGGTGATTAGAGATGCAGACGCTGGAGGATTCAATCCAGGACTTGTCGTGCTGCTCGTCGTCGGGGGGCTGCTCTTGGCTTTTCTCGTAGGGAATTACGCACTGTATGTTTATGCGCAGAAGACCCTCCCTCCCAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAACAAGGTATCTCTGCACCTGGAGAG

mRNA sequence

CAGGGGAAGGTGATTAGAGATGCAGACGCTGGAGGATTCAATCCAGGACTTGTCGTGCTGCTCGTCGTCGGGGGGCTGCTCTTGGCTTTTCTCGTAGGGAATTACGCACTGTATGTTTATGCGCAGAAGACCCTCCCTCCCAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAACAAGGTATCTCTGCACCTGGAGAG

Coding sequence (CDS)

CAGGGGAAGGTGATTAGAGATGCAGACGCTGGAGGATTCAATCCAGGACTTGTCGTGCTGCTCGTCGTCGGGGGGCTGCTCTTGGCTTTTCTCGTAGGGAATTACGCACTGTATGTTTATGCGCAGAAGACCCTCCCTCCCAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAACAAGGTATCTCTGCACCTGGAGAG

Protein sequence

QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Homology

[Close]

BLAST of MC01g0513 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-22
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 5  IRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLK 64
          + + +A G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 65 QGISAPGE 73
          QG++ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of MC01g0513 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-20
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 8  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGI 67
          A+A G NPGL+VLLVVGG LL FL+ NY LYVYAQK LPP+KKKPVSKKK+KRE+LKQG+
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGV 71

Query: 68 SAPGE 73
            PGE
Sbjct: 72 PVPGE 76

[Close]

BLAST of MC01g0513 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 12 GFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPG 71
          G NPG++VL+VV   LL F VGNYALYVYAQKTLPP+KKKPVSKKKMKRE+LKQG+SAPG
Sbjct: 20 GLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPG 79

Query: 72 E 73
          E
Sbjct: 80 E 80

[Close]

BLAST of MC01g0513 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-20
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 9  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGIS 68
          ++ G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+ 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 69 APGE 73
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of MC01g0513 vs. ExPASy Swiss-Prot
Match: P42553 (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 12 GFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGISAPG 71
          G NPG +VLLVV  LL+ F VGNYALY+YAQKTLPP+KKKPVSKKK+KRE+LKQG+SAPG
Sbjct: 16 GLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPG 75

Query: 72 E 73
          E
Sbjct: 76 E 76

[Close]

BLAST of MC01g0513 vs. NCBI nr
Match: XP_022143745.1 (DNA-binding protein S1FA-like [Momordica charantia])

HSP 1 Score: 135 bits (340), Expect = 1.37e-39
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR
Sbjct: 18 MGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQGISAPGE
Sbjct: 78 ERLKQGISAPGE 89

[Close]

BLAST of MC01g0513 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 127 bits (319), Expect = 2.19e-36
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           G VIRDADA GFNPGL+VLLVVGGLLLAFL GNYALY+YAQKTLPPKKKKPVSKKKMKR
Sbjct: 18 MGNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYMYAQKTLPPKKKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQGISAPGE
Sbjct: 78 ERLKQGISAPGE 89

[Close]

BLAST of MC01g0513 vs. NCBI nr
Match: XP_022962636.1 (DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding protein S1FA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (315), Expect = 8.91e-36
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           G VIR+ADA GFNPGL+VLLVVGGLLLAFL GNYALYVYAQKTLPPK+KKPVSKKKMKR
Sbjct: 18 MGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQGISAPGE
Sbjct: 78 ERLKQGISAPGE 89

[Close]

BLAST of MC01g0513 vs. NCBI nr
Match: XP_004143239.1 (DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_003029 [Cucumis sativus])

HSP 1 Score: 124 bits (310), Expect = 5.16e-35
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           G VIRD +A GFNPGL+VLLVVGGLL AFLVGNYALY+YAQKTLPPKKKKPVSKKKMKR
Sbjct: 18 MGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQG+SAPGE
Sbjct: 78 ERLKQGVSAPGE 89

[Close]

BLAST of MC01g0513 vs. NCBI nr
Match: RVW38763.1 (DNA-binding protein S1FA2 [Vitis vinifera] >RVW97347.1 DNA-binding protein S1FA2 [Vitis vinifera])

HSP 1 Score: 122 bits (305), Expect = 4.00e-34
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
          QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+
Sbjct: 28 QGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKK 87

Query: 61 ERLKQGISAPGE 72
          ERLKQG+SAPGE
Sbjct: 88 ERLKQGVSAPGE 99

[Close]

BLAST of MC01g0513 vs. ExPASy TrEMBL
Match: A0A6J1CPM9 (DNA-binding protein S1FA-like OS=Momordica charantia OX=3673 GN=LOC111013587 PE=3 SV=1)

HSP 1 Score: 135 bits (340), Expect = 6.62e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR
Sbjct: 18 MGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQGISAPGE
Sbjct: 78 ERLKQGISAPGE 89

[Close]

BLAST of MC01g0513 vs. ExPASy TrEMBL
Match: A0A6J1HDT2 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3 SV=1)

HSP 1 Score: 125 bits (315), Expect = 4.31e-36
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           G VIR+ADA GFNPGL+VLLVVGGLLLAFL GNYALYVYAQKTLPPK+KKPVSKKKMKR
Sbjct: 18 MGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQGISAPGE
Sbjct: 78 ERLKQGISAPGE 89

[Close]

BLAST of MC01g0513 vs. ExPASy TrEMBL
Match: A0A0A0KEM3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1)

HSP 1 Score: 124 bits (310), Expect = 2.50e-35
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           G VIRD +A GFNPGL+VLLVVGGLL AFLVGNYALY+YAQKTLPPKKKKPVSKKKMKR
Sbjct: 18 MGNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKR 77

Query: 61 ERLKQGISAPGE 72
          ERLKQG+SAPGE
Sbjct: 78 ERLKQGVSAPGE 89

[Close]

BLAST of MC01g0513 vs. ExPASy TrEMBL
Match: A0A438IKX7 (DNA-binding protein S1FA2 OS=Vitis vinifera OX=29760 GN=S1FA2_0 PE=3 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.94e-34
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
          QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+
Sbjct: 28 QGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKK 87

Query: 61 ERLKQGISAPGE 72
          ERLKQG+SAPGE
Sbjct: 88 ERLKQGVSAPGE 99

[Close]

BLAST of MC01g0513 vs. ExPASy TrEMBL
Match: A5BKG4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033336 PE=3 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.53e-34
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1   QGKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKR 60
           QG VI+DADA GFNPGL+VLL+V GLLL FLVGNYALYVYAQKTLPP+KKKPVSKKKMK+
Sbjct: 37  QGNVIKDADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKK 96

Query: 61  ERLKQGISAPGE 72
           ERLKQG+SAPGE
Sbjct: 97  ERLKQGVSAPGE 108

[Close]

BLAST of MC01g0513 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-21
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 8  ADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGI 67
          A+A G NPGL+VLLVVGG LL FL+ NY LYVYAQK LPP+KKKPVSKKK+KRE+LKQG+
Sbjct: 12 AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGV 71

Query: 68 SAPGE 73
            PGE
Sbjct: 72 PVPGE 76

[Close]

BLAST of MC01g0513 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-21
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 9  DAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRERLKQGIS 68
          ++ G NPGL+VLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+ 
Sbjct: 10 ESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQ 69

Query: 69 APGE 73
           PGE
Sbjct: 70 VPGE 73

[Close]

BLAST of MC01g0513 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 2  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRE 61
          GK +   +A G NPGL+VLLV+GGLL+ FL+ NY +Y+YAQK LPP+KKKP+SKKK+KRE
Sbjct: 8  GKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKRE 67

Query: 62 RLKQGISAPGE 73
          +LKQG+  PGE
Sbjct: 68 KLKQGVPVPGE 76

[Close]

BLAST of MC01g0513 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 40 YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE 73
          +A K LPP+KKKPVSKKK+KRE+LKQG+  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:

BLAST of MC01g0513 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	4.3e-22	73.53	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42551	2.3e-20	75.38	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q7XLX6	3.1e-20	80.33	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
Q93VI0	6.8e-20	71.88	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]
P42553	1.2e-19	78.69	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]

BLAST of MC01g0513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143745.1	1.37e-39	98.61	DNA-binding protein S1FA-like [Momordica charantia]	[more]
XP_038881351.1	2.19e-36	91.67	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
XP_022962636.1	8.91e-36	90.28	DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding p...	[more]
XP_004143239.1	5.16e-35	87.50	DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_...	[more]
RVW38763.1	4.00e-34	86.11	DNA-binding protein S1FA2 [Vitis vinifera] >RVW97347.1 DNA-binding protein S1FA2...	[more]

BLAST of MC01g0513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPM9	6.62e-40	98.61	DNA-binding protein S1FA-like OS=Momordica charantia OX=3673 GN=LOC111013587 PE=...	[more]
A0A6J1HDT2	4.31e-36	90.28	DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111463054 PE=3...	[more]
A0A0A0KEM3	2.50e-35	87.50	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_6G445000 PE=3 SV=1	[more]
A0A438IKX7	1.94e-34	86.11	DNA-binding protein S1FA2 OS=Vitis vinifera OX=29760 GN=S1FA2_0 PE=3 SV=1	[more]
A5BKG4	2.53e-34	86.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033336 PE=3 SV=1	[more]

BLAST of MC01g0513 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53370.1	1.7e-21	75.38	S1FA-like DNA-binding protein	[more]
AT3G09735.1	4.8e-21	71.88	S1FA-like DNA-binding protein	[more]
AT2G37120.1	1.4e-20	64.79	S1FA-like DNA-binding protein	[more]
AT3G53370.2	3.0e-07	72.73	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 8..72 e-value: 6.2E-40 score: 135.2
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 2..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..62
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0513.1	MC01g0513.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding