MC01g0361 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0361
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	high mobility group B protein 1
Location	MC01: 10341527 .. 10345579 (-)
RNA-Seq Expression	MC01g0361
Synteny	MC01g0361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAACCAAAAAAGTACATGGGTAATGGGCCATTGGCTATAATGGCCCTAAAGACCCGGAAGAGAAGATGTTGACTGGGCCGAGCGCCCAAAATCTTACACGTGTTAAACCGTGGAAGGTCACTGGACCGGGGGCCCAAATCCCACACGTGGGAGGATGTGGCACGTGCCACAGAATTATATAATATCTGTTGTCACTGTCTGTATGGGATCGCTTTGGCGGCAATGATCATTATTCATTTCCACAAAACCCAAAAGATAATTCCTTCGCGATCATATATTTATTTATATTCTTTCTTCCTATTTATTCTTTTAAAAAAATAAAAAATATCGCTCACCGGTTGTAGCCGGTCAAAGGTCGCTCTTTCGCGGGCTCGTCATCGTGTGGCGGCAAAATTTGCGTGTGTTACTGGTCCTTCCGGTTGCTCAAATCAATTTCCTTCTCTCCTCGGGTTCGAATTCAACTCTGGTTCTTTCTTTTGAACTGTTATCTCTCTCTCTCTCTCTGAAAAATCTTCAGTATTGATTCTCTGTTTTCTTTCCGATACCTTTTGGATCGGACGGCGTGGTTCCTCGAAGGTAATTGATTCTCTGCTTTCTAGATCTCTTCTCTTCTTTGTTTTCTCAGTTTTTTAGTTCCAGGTTTCCTCTAGTTCTGTTTGTTTGCGTGCAAATTTATCATCAGTTGAAGCTAATTTGTTGTGATTTTGAGGTTGTGTTCGTTTTCTTTTCCTTTAATTCTGTGGAAAATTATCGTTGTTGAGCTATATATGTTGTGTTTTTGTTTGTTTGTCTTCTTAATAATTGTTAGTGGAGTTGTTTAACTTCAACGGATGAGAGAACTGAAGAAAGAAGTAGCAGTAGGAATTAAGAACTTGAGTTTTGTTAAGTCAATTACATTTTAGGTTTCTTCTTCACTCTAATACTCAATCAGCGATTAAACAAGTGATTTTTCATGGTTGTAATACATAGGAATCTACCGAGTCTGCTTGTTCTTATTCCTTGTATCTTTTACTGTGAATTTTCCGTAGCTTGGGGATTATTGTTTGTCAATTTTAGAGATGGCTTTTGCAATTGAAATTTAGGGATTTTAGTCTCGCTTAGGTCTCTTTATTATTATTATTTTTTTAAAGGTTCGGTTAGGTCATTTATGTTCAAGAACATGTATACTATTACAATTGGCTATCACTCGATTTGTTTGCTTCTGGATGTTCATCAATTATTACGTATCGTGTATATATATATATATATGTTTCTGTAAGAAAAAGAACGGTTTCTAGAGGTTTACTTTCACTGCATTTCTGTCCTTTTGACATGTACTTTTATATTAGATACCGTGTTTGATTGATTCCTATCCAGGCTGTTTGAGGTACTGCTTTTCCTTATTTTCCTCAAATTGTTCTTGTCATGATTCTTGTGCGTGTAGGCTGTTGTTTTTTGAACTATTGGACTTGTAATAACTGGCCAGGATTATTATTCTTCTACTCAACTCGTAGTTATTCCGACAGGTATTTGCCTTGCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGGTAGCCTTTTGTTCATTGTTCCACCACGAATTTCATATCTTTTTGGACTGATAATATAAGACCTTGTAATTGTTTAGTTATGAATATCTGTGATCCATATGATTAGTATTGGTAGCTTGCTGACATCTATTTTCAGTGTATCGAATTTCCATCAAGTTTACGAGTTCTGTTGATGTCTAATAATATCTACACACTTGATGGTGTATACAGTGGTTACAGGAATTTTGTAGTGACGGATCATAAATATCTCTATTATTTTCAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTGTTCGTATTTGGTTTTTACTGTCATTTCAGGCTGAAAACTACCTTTTCGATTTCTTTTAGGAAGAAAATCTTCTTAATATTGTTTAAATTTATGTAACAGAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTACGTAACCAGTGAAATTGGCCTAAAGATGCCCACAACTTGATATGCAAATATAGAGTAAATTATTGACATTTTCCCCACATTTTCAGGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGTAAGTATCGTCATGTATTACATAAAAATTGAAGCAGCCTTAAAATGATTGCCCTCATTTCCTTTTTCCTCCATGTATAATGTTGATGAATGGAATTCTGTTTCCAGAGGTTTTATGTTAAATTGGTGCTAAATCTTGGAACTTTATCTTGCCTTTGGATTAGGGTCACTGTCAATGATCTCGCATTGAATATCACATTTGATTTTTTTCTTTTCTTTTACCTGGACTCGGTCTCGGTCTTTCTTCTGCTTCTGTAATGGCATTTTCTTACTATCAATGTTGGGCAATATTCCATTTTAACTATACTTCTTTATTCTTGATCGGTTCTTAAGTTTATTTATTGGGTCTTCTCATTGAAAACTAACTTACTGGATTAAAAAGGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGTAGGCATGCTCTGCATTTTGTGTATAAATTTATAAAAGAATGTGTTTGGCTAGCTTTTTGAGGGGAAAAAAAACTATTTCTAAGTAAAACACTTATTATATATAACACTTTTCCAGTTAAATGTTTCCTCTCAAAGCACTGACGTACTTTTTTTTTATATATTTTGAAAATTTCTCAAACCATTTTTATCATTGGAAATTGTAAAAGGCACTTTTTTTTTCACTCTTTAAATTCTTAACCAAACACTATTAATTTAAAAAAAAAAAAAACACTTTTGATCATCAATTACCACTTCAAAAGAGTACTTATATACTCTTCTTTGAATGGACAGGCCAGTGACGAAGAATCAGAGAGGTCGAAATCTGAAGTGAACGATGAGGACGAGGCCAGTGAGGAGGTATTTTTAATGCAAATGTGATACTTGTACAGCGTTTCAGTGCATAATAAGCAAATTCAGATTCTTTTTGCTGTTTTTCTTGCTCATATTTCATTTTAAAATATAAACCTCATTGTTCGAAGTTGGAAAGTAAAAAGAAGTTTATATTCTCTTGAGAATCTTAGCAACTGGCAGCCTGATTTGGAAAATGCCCACCGCAATTAACAAGAATGCATTAGAAGGCATGGATTTGGTATATAATATAAGTTATATATATATATATATATATATATTCTGTTTCCCAATTGAAAATTGTCACGACCGATCAGTTTACTACTGCTGCTTCATGATCGAGCAAATTGAAACTGGAATGTGATTGAGAAACGCTTTCAAATCATCCAAAAAATACTTTCCAGCTATACCTATTTAGTTTATTTCCCAGACTATGAATCATTTCCCTCATCTATTTGCAGGAACATCAAGATGATGATGATGATGCAGAGGAAGATGATGAAGATGACGAAGATGAAGATGATGACTAGATTGAAAAACAGCTTTCTGACACTCACAATGGCCGACCCAGCTAGAGGGAGGGACTAGCTCATGTATGTTCATATTTAGAACTTGTGTGCTTTCTTTTCTCTCTTCTTTTGTATTTGTGTAACATGAAAGAAGTGCCGTATGGCGCTTCCCTCCGATATCTTACTGTTTAAATGGTGGTCTCGACACTGCTCACATCGCTTTTGTCGTACACATAGTTAAGATCTCTGGGTATTCTGGCCATGTGATGACGAGGTAAAATTATCAAATACCATCTTTTGGAAGCTGTAGATCAAGTTCAAGAAATGGGGTTTGTTTCTTTTATCAAACTTTTAGAAAGAGATCGTATGAGCTTCAGCTGGATACGACTATAATTAGATGATCGTTGATTTACATTA

mRNA sequence

GAAAAAACCAAAAAAGTACATGGGTAATGGGCCATTGGCTATAATGGCCCTAAAGACCCGGAAGAGAAGATGTTGACTGGGCCGAGCGCCCAAAATCTTACACGTGTTAAACCGTGGAAGGTCACTGGACCGGGGGCCCAAATCCCACACGTGGGAGGATGTGGCACGTGCCACAGAATTATATAATATCTGTTGTCACTGTCTGTATGGGATCGCTTTGGCGGCAATGATCATTATTCATTTCCACAAAACCCAAAAGATAATTCCTTCGCGATCATATATTTATTTATATTCTTTCTTCCTATTTATTCTTTTAAAAAAATAAAAAATATCGCTCACCGGTTGTAGCCGGTCAAAGGTCGCTCTTTCGCGGGCTCGTCATCGTGTGGCGGCAAAATTTGCGTGTGTTACTGGTCCTTCCGGTTGCTCAAATCAATTTCCTTCTCTCCTCGGTATTGATTCTCTGTTTTCTTTCCGATACCTTTTGGATCGGACGGCGTGGTTCCTCGAAGGTATTTGCCTTGCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGTGACGAAGAATCAGAGAGGTCGAAATCTGAAGTGAACGATGAGGACGAGGCCAGTGAGGAGGAACATCAAGATGATGATGATGATGCAGAGGAAGATGATGAAGATGACGAAGATGAAGATGATGACTAGATTGAAAAACAGCTTTCTGACACTCACAATGGCCGACCCAGCTAGAGGGAGGGACTAGCTCATGTATGTTCATATTTAGAACTTGTGTGCTTTCTTTTCTCTCTTCTTTTGTATTTGTGTAACATGAAAGAAGTGCCGTATGGCGCTTCCCTCCGATATCTTACTGTTTAAATGGTGGTCTCGACACTGCTCACATCGCTTTTGTCGTACACATAGTTAAGATCTCTGGGTATTCTGGCCATGTGATGACGAGGTAAAATTATCAAATACCATCTTTTGGAAGCTGTAGATCAAGTTCAAGAAATGGGGTTTGTTTCTTTTATCAAACTTTTAGAAAGAGATCGTATGAGCTTCAGCTGGATACGACTATAATTAGATGATCGTTGATTTACATTA

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGTGACGAAGAATCAGAGAGGTCGAAATCTGAAGTGAACGATGAGGACGAGGCCAGTGAGGAGGAACATCAAGATGATGATGATGATGCAGAGGAAGATGATGAAGATGACGAAGATGAAGATGATGACTAG

Protein sequence

MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD

Homology

[Close]

BLAST of MC01g0361 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40
Identity = 116/180 (64.44%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSK-KASDEESERSKSEVNDEDEASEEEH--------QDDDDDAEEDDEDDEDEDDD 172
            AY+   +   +ESE+S+SE+NDEDEAS EE          D++++ EEDD+DD+DE++D
Sbjct: 121 DAYNKNLEEGSDESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEED 178

[Close]

BLAST of MC01g0361 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26
Identity = 90/163 (55.21%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K K  S+ +   L       V K+ AA KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+EEFRK F +++P  KAVSAVGKA G KWK++S AEKAPY AK+ K+K EYEK M
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 120

Query: 121 RAYDSKKA------SDEESERSKSEVNDEDEASEEEHQDDDDD 158
           RAY+ K+A       +EESE+S SEVNDED+  E   +++DDD
Sbjct: 121 RAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of MC01g0361 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-26
Identity = 86/159 (54.09%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K KG S+ ++  L       V K+ AA  A K  K+P K   K  KDPNKPKRPPS
Sbjct: 1   MKGGKSKGESKKAETKL------AVNKKGAA--ATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+ +FR+++K+D+P+ K+V+AVGKA GE+WKSLS  EKAPY  +A KKK EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 120

Query: 121 RAYDSK---KASDEESERSKSEVNDEDEASEEEHQDDDD 157
           +AY+ K   K  +E S++SKSEVNDEDE  E+E  +DDD
Sbjct: 121 QAYNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

[Close]

BLAST of MC01g0361 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 24  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVK 83
           K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSK----KASDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+AY+ K       DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQDDDDD 158
           SEVNDED+A +   +++DDD
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of MC01g0361 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.8e-25
Identity = 80/161 (49.69%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG+K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+E+FR+ FK++NP  K+V+ VGKA G+KWKSLS +EKAPY AKA K+K EYEK +
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 120

Query: 121 RAYDSK----KASDEESERSKSEVNDEDEASEEEHQDDDDD 158
           +AY+ K       DEES++S SEVNDED+A +   +++DDD
Sbjct: 121 KAYNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of MC01g0361 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 283 bits (724), Expect = 3.19e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD 171
           RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD
Sbjct: 121 RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD 171

[Close]

BLAST of MC01g0361 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 254 bits (649), Expect = 7.95e-84
Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDE 163
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ+DDD+ +EDDE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDE 166

[Close]

BLAST of MC01g0361 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 252 bits (644), Expect = 4.75e-83
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQ 152
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQ 155

[Close]

BLAST of MC01g0361 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 250 bits (638), Expect = 4.03e-82
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAA+KADK   RPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEA+AAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDD 156
           +AYDSKKAS   DEESERSKSEVNDEDEASEEEHQ+DDD
Sbjct: 121 KAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDD 159

[Close]

BLAST of MC01g0361 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 247 bits (631), Expect = 2.74e-81
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEE 149
           RAYDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of MC01g0361 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 283 bits (724), Expect = 1.54e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD 171
           RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD
Sbjct: 121 RAYDSKKASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDEDDD 171

[Close]

BLAST of MC01g0361 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 254 bits (649), Expect = 3.85e-84
Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDE 163
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ+DDD+ +EDDE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDE 166

[Close]

BLAST of MC01g0361 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 252 bits (644), Expect = 2.30e-83
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQ 152
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQ 155

[Close]

BLAST of MC01g0361 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 247 bits (631), Expect = 1.32e-81
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEE 149
           RAYDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of MC01g0361 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 1.01e-75
Identity = 142/169 (84.02%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG KGKGTSRVSKEALKPVDDRKVGKRKAAIKADK  KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFR+E+KR+NP+VKAVSAVGKAGG++W+SL+H EKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDE 166
           RAYDSKKAS   DEE ERSKSEVN ED+ASEEEH +DD++ EE+DEDDE
Sbjct: 121 RAYDSKKASEADDEELERSKSEVNGEDDASEEEHHEDDEEEEEEDEDDE 169

[Close]

BLAST of MC01g0361 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-45
Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSK-KASDEESERSKSEVNDEDEASEEEHQDDDDDAEEDD 163
            AY+   +   +ESE+S+SE+NDEDEAS EE  DDDDD EE+D
Sbjct: 121 DAYNKNLEEGSDESEKSRSEINDEDEASGEEEDDDDDDDEEED 161

[Close]

BLAST of MC01g0361 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-41
Identity = 116/180 (64.44%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSK-KASDEESERSKSEVNDEDEASEEEH--------QDDDDDAEEDDEDDEDEDDD 172
            AY+   +   +ESE+S+SE+NDEDEAS EE          D++++ EEDD+DD+DE++D
Sbjct: 121 DAYNKNLEEGSDESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEED 178

[Close]

BLAST of MC01g0361 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-41
Identity = 116/180 (64.44%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSK-KASDEESERSKSEVNDEDEASEEEH--------QDDDDDAEEDDEDDEDEDDD 172
            AY+   +   +ESE+S+SE+NDEDEAS EE          D++++ EEDD+DD+DE++D
Sbjct: 121 DAYNKNLEEGSDESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDDEEED 178

[Close]

BLAST of MC01g0361 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 161.8 bits (408), Expect = 5.0e-40
Identity = 116/183 (63.39%), Postives = 142/183 (77.60%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSK-KASDEESERSKSEVNDEDEASEE-----------EHQDDDDDAEEDDEDDEDE 172
            AY+   +   +ESE+S+SE+NDEDEAS E           E +   DD EE++E+D+D+
Sbjct: 121 DAYNKNLEEGSDESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDDDD 180

[Close]

BLAST of MC01g0361 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 24  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVK 83
           K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSK----KASDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+AY+ K       DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQDDDDD 158
           SEVNDED+A +   +++DDD
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

The following BLAST results are available for this feature:

BLAST of MC01g0361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	2.2e-40	64.44	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P26585	1.4e-26	55.21	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P40620	4.0e-26	54.09	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P93047	4.4e-25	57.14	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	9.8e-25	49.69	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of MC01g0361 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151579.1	3.19e-95	100.00	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]
XP_011653690.1	7.95e-84	90.96	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_008449957.1	4.75e-83	92.90	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
XP_038883904.1	4.03e-82	91.19	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]
KAA0031875.1	2.74e-81	92.76	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]

BLAST of MC01g0361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBK9	1.54e-95	100.00	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A0A0L1B2	3.85e-84	90.96	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A1S3BML2	2.30e-83	92.90	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A5A7SRU9	1.32e-81	92.76	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1ISM4	1.01e-75	84.02	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of MC01g0361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.4	3.9e-45	69.94	high mobility group B1	[more]
AT3G51880.1	1.5e-41	64.44	high mobility group B1	[more]
AT3G51880.3	1.5e-41	64.44	high mobility group B1	[more]
AT3G51880.2	5.0e-40	63.39	high mobility group B1	[more]
AT1G20696.1	3.1e-26	57.14	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 2.5E-24 score: 96.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 1.7E-23 score: 82.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.465244
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 50..128 e-value: 4.6E-25 score: 89.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 47..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..160
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..101 e-value: 2.80118E-8 score: 46.467
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0361.1	MC01g0361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin