MC01g0259 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0259
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	MC01: 9270936 .. 9271289 (+)
RNA-Seq Expression	MC01g0259
Synteny	MC01g0259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCTTATGAGGCCTGTTGGTTTTCAGCCAAAAATTTTTAATGGAGTTCGACTTCGAAATGTCTCTTTTGTTGAAAATACGGCGTCATTGATTGTCAAAGCTACGTCTGAGATTGATGGTACGGGAGAGACTGACAGTAATGAACCGCAGCCCCCTGCAGAAGCTAAAAAAGAGGATGTTCCAGTTGACAAACTTCCCTTAGAATCAAAGCTCCAGGAGAGACTGGAGCAGAAGACGAGGATGAAATTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAGTTGAAGAATGTT

mRNA sequence

ATTTTGCTTATGAGGCCTGTTGGTTTTCAGCCAAAAATTTTTAATGGAGTTCGACTTCGAAATGTCTCTTTTGTTGAAAATACGGCGTCATTGATTGTCAAAGCTACGTCTGAGATTGATGGTACGGGAGAGACTGACAGTAATGAACCGCAGCCCCCTGCAGAAGCTAAAAAAGAGGATGTTCCAGTTGACAAACTTCCCTTAGAATCAAAGCTCCAGGAGAGACTGGAGCAGAAGACGAGGATGAAATTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAGTTGAAGAATGTT

Coding sequence (CDS)

ATTTTGCTTATGAGGCCTGTTGGTTTTCAGCCAAAAATTTTTAATGGAGTTCGACTTCGAAATGTCTCTTTTGTTGAAAATACGGCGTCATTGATTGTCAAAGCTACGTCTGAGATTGATGGTACGGGAGAGACTGACAGTAATGAACCGCAGCCCCCTGCAGAAGCTAAAAAAGAGGATGTTCCAGTTGACAAACTTCCCTTAGAATCAAAGCTCCAGGAGAGACTGGAGCAGAAGACGAGGATGAAATTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAGTTGAAGAATGTT

Protein sequence

ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of MC01g0259 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-15
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKE 60
           +L ++P   + K  N V L   S   +   ++VK A S +DG       EP+    A   
Sbjct: 33  VLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA--- 92

Query: 61  DVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLK 119
            VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK K
Sbjct: 93  -VPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNK 148

[Close]

BLAST of MC01g0259 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-14
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 54  AEAKKED--VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSK 113
           +E+KKE   V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSK
Sbjct: 79  SESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSK 138

Query: 114 MKKLKNV 119
           MKKL+ V
Sbjct: 139 MKKLEGV 145

[Close]

BLAST of MC01g0259 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 39  IDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRK 98
           +    E  + E    ++ ++ ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL+RK
Sbjct: 63  VSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRK 122

Query: 99  RHLRKKGRWPPSKMKKLKNV 119
           R LRK+G WPPSKMKKLKNV
Sbjct: 123 RKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of MC01g0259 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 213 bits (543), Expect = 8.87e-69
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED
Sbjct: 40  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 99

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 100 VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MC01g0259 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 191 bits (484), Expect = 9.19e-60
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKED
Sbjct: 42  MLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED 101

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           V VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 102 VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of MC01g0259 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189 bits (479), Expect = 5.30e-59
Identity = 105/118 (88.98%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P GFQPK FNGVRLRN SFVENT S  VKA SEID TGETDSNEP+P AEAKKED
Sbjct: 42  MLLMKPTGFQPKHFNGVRLRNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKED 101

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 102 VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of MC01g0259 vs. NCBI nr
Match: XP_022967912.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 188 bits (477), Expect = 1.00e-58
Identity = 105/116 (90.52%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 3   LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVP 62
           LM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDVP
Sbjct: 42  LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVP 101

Query: 63  VDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 102 VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MC01g0259 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 2.87e-58
Identity = 105/118 (88.98%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKED
Sbjct: 40  MLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKED 99

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           V VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 100 VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MC01g0259 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 4.29e-69
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED
Sbjct: 40  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 99

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 100 VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MC01g0259 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 4.45e-60
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKED
Sbjct: 42  MLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED 101

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           V VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 102 VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of MC01g0259 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.85e-59
Identity = 105/116 (90.52%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 3   LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVP 62
           LM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDVP
Sbjct: 42  LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVP 101

Query: 63  VDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 102 VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of MC01g0259 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 3.50e-58
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS++ QP AEAKKED
Sbjct: 36  MLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKED 95

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 96  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of MC01g0259 vs. ExPASy TrEMBL
Match: A0A5D3CEM6 (50S ribosomal protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00820 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 9.33e-58
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKED 60
           +LLM+P+GFQPK FNGVRLRN  FVENTASL+VKA SE D TGE DS+E QP AEAKKED
Sbjct: 1   MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED 60

Query: 61  VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 118
           VPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 61  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 118

[Close]

BLAST of MC01g0259 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-16
Identity = 63/122 (51.64%), Postives = 76/122 (62.30%), Query Frame = 0


Query: 1   ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKE 60
           +L ++P   + K  N V L   S   +   ++VK A S +DG       EP+    A   
Sbjct: 33  VLSLKPNAVESK--NRVSLSAYSLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA--- 92

Query: 61  DVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLK 119
            VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK K
Sbjct: 93  -VPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNK 148

The following BLAST results are available for this feature:

BLAST of MC01g0259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LER7	1.7e-15	51.64	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P11891	4.1e-14	73.13	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
P27684	1.2e-13	57.50	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of MC01g0259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154476.1	8.87e-69	100.00	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_022949869.1	9.19e-60	89.83	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543496.1	5.30e-59	88.98	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967912.1	1.00e-58	90.52	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima]	[more]
KAG7013851.1	2.87e-58	88.98	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of MC01g0259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNT9	4.29e-69	100.00	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	4.45e-60	89.83	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HS41	4.85e-59	90.52	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0L3F4	3.50e-58	87.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A5D3CEM6	9.33e-58	86.44	50S ribosomal protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC01g0259 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.2e-16	51.64	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..118
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..118
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0259.1	MC01g0259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome