MC01g0208 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0208
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Location	MC01: 8498072 .. 8498209 (-)
RNA-Seq Expression	MC01g0208
Synteny	MC01g0208

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTCTTTATTGGACAACGGGGAGTTTTGAATTTCGCGATTTGTTTAAAATATTCAATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTGCGCGGTCCTATTATTTGCAGGTGCAGTTGCT

mRNA sequence

TTAGGTCTTTATTGGACAACGGGGAGTTTTGAATTTCGCGATTTGTTTAAAATATTCAATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTGCGCGGTCCTATTATTTGCAGGTGCAGTTGCT

Coding sequence (CDS)

TTAGGTCTTTATTGGACAACGGGGAGTTTTGAATTTCGCGATTTGTTTAAAATATTCAATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTGCGCGGTCCTATTATTTGCAGGTGCAGTTGCT

Protein sequence

LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA

Homology

[Close]

BLAST of MC01g0208 vs. ExPASy Swiss-Prot
Match: B1NWJ6 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhF PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LGLYW TGSFEFRDLFKIFNNLIYNN+VNFLFVTLCAVLLF+GA+A
Sbjct: 194 LGLYWITGSFEFRDLFKIFNNLIYNNQVNFLFVTLCAVLLFSGAIA 239

[Close]

BLAST of MC01g0208 vs. ExPASy Swiss-Prot
Match: Q2VED3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum tuberosum OX=4113 GN=ndhF PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LG YW TGSFEFRDLF+IFNNLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy Swiss-Prot
Match: Q68RV9 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng OX=4054 GN=ndhF PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LG YW TGSFEFRDLFKIF+NLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy Swiss-Prot
Match: Q2QD43 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhF PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.9e-17
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LGLYWTTGSFEFRDLF+IFNNLI NNEVNFLF+TLCAVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFQIFNNLIDNNEVNFLFLTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy Swiss-Prot
Match: Q2MIE0 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhF PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.9e-17
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LG YW TGSFEFRDLF+IFNNLIYNNEVNFLFVTLCAVLLFAGAV+
Sbjct: 194 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVS 239

[Close]

BLAST of MC01g0208 vs. NCBI nr
Match: QHR81692.1 (NADH dehydrogenase subunit F, partial [Drymocallis glandulosa])

HSP 1 Score: 86.7 bits (213), Expect = 1.02e-20
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
          LG YW TGSFEFRDLF+IFNNLIYNNEVNFLFVT CAVLLFAGAVA
Sbjct: 16 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTFCAVLLFAGAVA 61

[Close]

BLAST of MC01g0208 vs. NCBI nr
Match: YP_009738250.1 (NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase subunit 5 [Siraitia siamensis])

HSP 1 Score: 93.6 bits (231), Expect = 1.23e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. NCBI nr
Match: ABV65185.1 (NADH-plastoquinone oxidoreductase subunit 5, partial [Connarus conchocarpus])

HSP 1 Score: 90.1 bits (222), Expect = 1.59e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LGLYWTTGSFEFRDLF+IFNNLIYNNEVNFLFVTLCA LLFAGAVA
Sbjct: 103 LGLYWTTGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAFLLFAGAVA 148

[Close]

BLAST of MC01g0208 vs. NCBI nr
Match: CAM59971.2 (NADH dehydrogenase subunit F, partial [Hedera helix])

HSP 1 Score: 87.8 bits (216), Expect = 2.64e-20
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
          LG YW TGSFEFRDLFKIF+NLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 31 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 76

[Close]

BLAST of MC01g0208 vs. NCBI nr
Match: YP_009751952.1 (NADH dehydrogenase subunit F [Cyclanthera pedata] >QIT04770.1 NADH dehydrogenase subunit F [Cyclanthera pedata] >QWQ50086.1 NADH-plastoquinone oxidoreductase subunit 5 [Cyclanthera pedata])

HSP 1 Score: 92.0 bits (227), Expect = 4.27e-20
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LG YWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGFYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy TrEMBL
Match: A0A6C0UCC8 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX=2695833 GN=ndhF PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.95e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy TrEMBL
Match: A9XUM5 (NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Connarus conchocarpus OX=32210 GN=ndhF PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.72e-21
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LGLYWTTGSFEFRDLF+IFNNLIYNNEVNFLFVTLCA LLFAGAVA
Sbjct: 103 LGLYWTTGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAFLLFAGAVA 148

[Close]

BLAST of MC01g0208 vs. ExPASy TrEMBL
Match: A7WN41 (NADH dehydrogenase subunit F (Fragment) OS=Hedera helix OX=4052 GN=ndhF PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.28e-20
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
          LG YW TGSFEFRDLFKIF+NLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 31 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 76

[Close]

BLAST of MC01g0208 vs. ExPASy TrEMBL
Match: A0A6H0ERW7 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cyclanthera pedata OX=198836 GN=ndhF PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.07e-20
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
           LG YWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA
Sbjct: 194 LGFYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]

BLAST of MC01g0208 vs. ExPASy TrEMBL
Match: A7WN36 (NADH dehydrogenase subunit F (Fragment) OS=Betula pendula OX=3505 GN=ndhF PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.33e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1  LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 46
          LGLYW TGSFEFRDLF+IFNNLIYNNEVNFLFVTLCA+LLF+GA+A
Sbjct: 27 LGLYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCALLLFSGAIA 72

[Close]

BLAST of MC01g0208 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-14
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 47
           LGLYW TGSFEF+DLF+IFNNLI NN VN LF+TLCA LLF G +A
Sbjct: 194 LGLYWITGSFEFQDLFEIFNNLILNNRVNLLFLTLCAFLLFVGPIA 239

The following BLAST results are available for this feature:

BLAST of MC01g0208 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1NWJ6	2.0e-17	91.30	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=...	[more]
Q2VED3	2.6e-17	93.48	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum tuberosum OX=...	[more]
Q68RV9	3.5e-17	93.48	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng OX=4054...	[more]
Q2QD43	5.9e-17	93.48	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q2MIE0	5.9e-17	91.30	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum...	[more]

BLAST of MC01g0208 vs. NCBI nr


Match Name	E-value	Identity	Description
QHR81692.1	1.02e-20	91.30	NADH dehydrogenase subunit F, partial [Drymocallis glandulosa]	[more]
YP_009738250.1	1.23e-20	100.00	NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase...	[more]
ABV65185.1	1.59e-20	95.65	NADH-plastoquinone oxidoreductase subunit 5, partial [Connarus conchocarpus]	[more]
CAM59971.2	2.64e-20	93.48	NADH dehydrogenase subunit F, partial [Hedera helix]	[more]
YP_009751952.1	4.27e-20	97.83	NADH dehydrogenase subunit F [Cyclanthera pedata] >QIT04770.1 NADH dehydrogenase...	[more]

BLAST of MC01g0208 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6C0UCC8	5.95e-21	100.00	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX...	[more]
A9XUM5	7.72e-21	95.65	NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Connarus conchocarpus ...	[more]
A7WN41	1.28e-20	93.48	NADH dehydrogenase subunit F (Fragment) OS=Hedera helix OX=4052 GN=ndhF PE=4 SV=...	[more]
A0A6H0ERW7	2.07e-20	97.83	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cyclanthera pedata OX...	[more]
A7WN36	2.33e-20	89.13	NADH dehydrogenase subunit F (Fragment) OS=Betula pendula OX=3505 GN=ndhF PE=4 S...	[more]

BLAST of MC01g0208 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01010.1	3.7e-14	76.09	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0208.1	MC01g0208.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding