MC01g0149 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0149
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	arabinogalactan protein 23
Location	MC01: 7160307 .. 7160534 (+)
RNA-Seq Expression	MC01g0149
Synteny	MC01g0149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

mRNA sequence

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTCTTATTGCCTATTGCCTTCAG

Protein sequence

MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ

Homology

[Close]

BLAST of MC01g0149 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA   L AAA+                 AV+AA+E G+PAPGP SA+SA LP +G
Sbjct: 1  MEMKKIACGVLFAAASMT---------------AVMAAEEVGAPAPGPASAASAALPALG 60

Query: 61 ALIGASAASLIAYCL 76
          +L+GAS  SL +Y L
Sbjct: 61 SLVGASLVSLFSYYL 60

[Close]

BLAST of MC01g0149 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.13e-12
Identity = 46/76 (60.53%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMK  A AA +A  ASLSMVLA++E              A SPAPGP+S  SATLP VG
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDE--------------AASPAPGPSSGVSATLPVVG 60

Query: 61 ALIGASAASLIAYCLQ 76
           L+GASAASLIAYCLQ
Sbjct: 61 TLLGASAASLIAYCLQ 62

[Close]

BLAST of MC01g0149 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 9.15e-11
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 7  ALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGAS 66
          A AA +  AASLSMVLA++E              A SPAPGP+SA+SATLP VG L+GAS
Sbjct: 3  ACAAFITVAASLSMVLASDE--------------AASPAPGPSSAASATLPVVGTLLGAS 58

Query: 67 AASLIAYCLQ 76
          AASLIAYCLQ
Sbjct: 63 AASLIAYCLQ 58

[Close]

BLAST of MC01g0149 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale])

HSP 1 Score: 53.9 bits (128), Expect = 3.80e-07
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
           ME+KKI++A +VAAA SLS V+AANEV++PAPG              P+S +SATLP VG
Sbjct: 40  MELKKISIAVIVAAA-SLSSVMAANEVLAPAPG--------------PSSGASATLPVVG 99

Query: 61  ALIGASAASLIAYCLQ 76
           +L+GAS  S  AY L 
Sbjct: 100 SLVGASLVSFFAYYLH 100

[Close]

BLAST of MC01g0149 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.4 bits (124), Expect = 6.51e-07
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA AAL AAA +++ V+A++E +SPA             APGP+SA+SATLP +G
Sbjct: 1  MEMKKIACAALFAAA-TVTAVVASDESLSPAA------------APGPSSAASATLPALG 60

Query: 61 ALIGASAASLIAY 73
          +L+GAS  SL+AY
Sbjct: 61 SLVGASLVSLVAY 60

[Close]

BLAST of MC01g0149 vs. NCBI nr
Match: OAY40050.1 (hypothetical protein MANES_10G145300v8 [Manihot esculenta])

HSP 1 Score: 52.4 bits (124), Expect = 6.66e-07
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA  A++  AAS+S V+A  EV SP+P          SPAP PTSA++A LP VG
Sbjct: 1  MEMKKIA-CAIIFTAASMSAVMAV-EVPSPSP----------SPAPAPTSAATANLPVVG 60

Query: 61 ALIGASAASLIAYCLQ 76
          +LIGAS ASLIA  LQ
Sbjct: 61 SLIGASLASLIALYLQ 64

[Close]

BLAST of MC01g0149 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.03e-12
Identity = 46/76 (60.53%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMK  A AA +A  ASLSMVLA++E              A SPAPGP+S  SATLP VG
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDE--------------AASPAPGPSSGVSATLPVVG 60

Query: 61 ALIGASAASLIAYCLQ 76
           L+GASAASLIAYCLQ
Sbjct: 61 TLLGASAASLIAYCLQ 62

[Close]

BLAST of MC01g0149 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.84e-07
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
           ME+KKI++A +VAAA SLS V+AANEV++PAPG              P+S +SATLP VG
Sbjct: 40  MELKKISIAVIVAAA-SLSSVMAANEVLAPAPG--------------PSSGASATLPVVG 99

Query: 61  ALIGASAASLIAYCLQ 76
           +L+GAS  S  AY L 
Sbjct: 100 SLVGASLVSFFAYYLH 100

[Close]

BLAST of MC01g0149 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.15e-07
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA AAL AAA +++ V+A++E +SPA             APGP+SA+SATLP +G
Sbjct: 1  MEMKKIACAALFAAA-TVTAVVASDESLSPAA------------APGPSSAASATLPALG 60

Query: 61 ALIGASAASLIAY 73
          +L+GAS  SL+AY
Sbjct: 61 SLVGASLVSLVAY 60

[Close]

BLAST of MC01g0149 vs. ExPASy TrEMBL
Match: A0A2C9V688 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G145300 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.22e-07
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA  A++  AAS+S V+A  EV SP+P          SPAP PTSA++A LP VG
Sbjct: 1  MEMKKIA-CAIIFTAASMSAVMAV-EVPSPSP----------SPAPAPTSAATANLPVVG 60

Query: 61 ALIGASAASLIAYCLQ 76
          +LIGAS ASLIA  LQ
Sbjct: 61 SLIGASLASLIALYLQ 64

[Close]

BLAST of MC01g0149 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.21e-07
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1   MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
           ME+KKI+ A +VAAA SLS V+AANEV++PAPG              P+S +SATLP VG
Sbjct: 40  MELKKISTAVIVAAA-SLSSVMAANEVLAPAPG--------------PSSGASATLPVVG 99

Query: 61  ALIGASAASLIAYCLQ 76
           +L+GAS  S  AY L 
Sbjct: 100 SLVGASLVSFFAYYLH 100

[Close]

BLAST of MC01g0149 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 50.1 bits (118), Expect = 9.4e-07
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGAVLAAKEAGSPAPGPTSASSATLPGVG 60
          MEMKKIA   L AAA+                 AV+AA+E G+PAPGP SA+SA LP +G
Sbjct: 1  MEMKKIACGVLFAAASMT---------------AVMAAEEVGAPAPGPASAASAALPALG 60

Query: 61 ALIGASAASLIAYCL 76
          +L+GAS  SL +Y L
Sbjct: 61 SLVGASLVSLFSYYL 60

The following BLAST results are available for this feature:

BLAST of MC01g0149 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.3e-05	49.33	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of MC01g0149 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035760.1	2.13e-12	60.53	arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga...	[more]
KAE8649766.1	9.15e-11	61.43	hypothetical protein Csa_011936, partial [Cucumis sativus]	[more]
PON91671.1	3.80e-07	52.63	hypothetical protein TorRG33x02_125020 [Trema orientale]	[more]
XP_022933008.1	6.51e-07	53.42	arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact...	[more]
OAY40050.1	6.66e-07	57.89	hypothetical protein MANES_10G145300v8 [Manihot esculenta]	[more]

BLAST of MC01g0149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E271	1.03e-12	60.53	Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A2P5F1L3	1.84e-07	52.63	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV...	[more]
A0A6J1F3F5	3.15e-07	53.42	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A2C9V688	3.22e-07	57.89	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G145300 PE=4 SV=...	[more]
A0A2P5CAP7	5.21e-07	52.63	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE...	[more]

BLAST of MC01g0149 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	9.4e-07	49.33	arabinogalactan protein 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 34..76 coord: 1..33
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 34..76 coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g0149.1	MC01g0149.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane