MC00g_new0371 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0371
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	scaffold163: 586858 .. 587424 (-)
RNA-Seq Expression	MC00g_new0371
Synteny	MC00g_new0371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATAAAATGGACAACCAGAGGTATTACATATTAAACAGTGCAACTTGAAAAATTGCCAAAAGTATCCAATATCATAAAAATGGCTATAAGGCACCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATATATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCAGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGCACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGTACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGTTAAAGTTCAATGCTATAATTTAATGTGGACAAATATACCCTCCAACCAAAATAGCTAAAATTATCCTACCATTACCCAAAAATTTTGTGTCAAAAATACTCTTGAAACAACTAT

mRNA sequence

ATGGCTATAAGGCACCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATATATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCAGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGCACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGTACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGTTAAAGTTCAATGCTATAATTTAATGTGGACAAATATACCCTCCAACCAAAATAGCTAA

Coding sequence (CDS)

ATGGCTATAAGGCACCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATATATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCAGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGCACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGTACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGTTAAAGTTCAATGCTATAATTTAATGTGGACAAATATACCCTCCAACCAAAATAGCTAA

Protein sequence

MAIRHPRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHVKVQCYNLMWTNIPSNQNS

Homology

[Close]

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.5e-66
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRCIG+RNQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 261 PRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 320

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTR--H 125
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTR  H
Sbjct: 321 AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGH 380

Query: 126 VKVQCYNLMWTNIPS 139
               CY  ++  I S
Sbjct: 381 PAFLCYIDLYVTIES 395

[Close]

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot
Match: A8SE78 (DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum OX=4428 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-64
Identity = 117/135 (86.67%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRCI  RNQDIGIGLINRFITF+ QPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 260 PRCIATRNQDIGIGLINRFITFRAQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 319

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTR--H 125
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTR  H
Sbjct: 320 AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGH 379

Query: 126 VKVQCYNLMWTNIPS 139
               CY  ++  I S
Sbjct: 380 PAFLCYIDLYVTIES 394

[Close]

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.8e-64
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRCI IRNQDIGIGL+NRFITF+TQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 261 PRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 320

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 124
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFN+DLVHPTRTRH
Sbjct: 321 AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNDDLVHPTRTRH 378

[Close]

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot
Match: Q09X27 (DNA-directed RNA polymerase subunit beta'' OS=Morus indica OX=248361 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-63
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI +RNQDIGIGL+NRFITFQTQPI IRTPFTC+STSWICRLCYGRSPTHGDLVELGEA
Sbjct: 262 RCIAVRNQDIGIGLVNRFITFQTQPISIRTPFTCKSTSWICRLCYGRSPTHGDLVELGEA 321

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 124
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 322 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 378

[Close]

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot
Match: Q8S8Y1 (DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna OX=33113 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.4e-63
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRCI  RNQDIGIGL+NRFITF+ QPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 261 PRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 320

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 124
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 321 AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 378

[Close]

BLAST of MC00g_new0371 vs. NCBI nr
Match: CAP11908.1 (RNA polymerase beta subunit, partial [Begonia conchifolia])

HSP 1 Score: 242 bits (617), Expect = 1.33e-79
Identity = 117/135 (86.67%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRC+GI+NQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 14  PRCVGIQNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 73

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH-- 125
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNE+ VHPTRTRH  
Sbjct: 74  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNENWVHPTRTRHGH 133

Query: 126 VKVQCYNLMWTNIPS 138
               CY  ++  I S
Sbjct: 134 PAFLCYINLYVTIES 148

[Close]

BLAST of MC00g_new0371 vs. NCBI nr
Match: CAP11909.1 (RNA polymerase beta subunit, partial [Begonia plagioneura])

HSP 1 Score: 241 bits (615), Expect = 2.69e-79
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCIGI+NQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA
Sbjct: 15  RCIGIQNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 74

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNE+LVHPTRTRH
Sbjct: 75  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNENLVHPTRTRH 131

[Close]

BLAST of MC00g_new0371 vs. NCBI nr
Match: CAP11921.1 (RNA polymerase beta subunit, partial [Sophora toromiro])

HSP 1 Score: 240 bits (612), Expect = 6.08e-78
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI IRNQDIGIGL+NRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVELGEA
Sbjct: 75  RCIAIRNQDIGIGLLNRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEA 134

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 135 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 191

[Close]

BLAST of MC00g_new0371 vs. NCBI nr
Match: CAP11920.1 (RNA polymerase beta subunit, partial [Sophora microphylla])

HSP 1 Score: 240 bits (612), Expect = 6.08e-78
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI IRNQDIGIGL+NRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVELGEA
Sbjct: 75  RCIAIRNQDIGIGLLNRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEA 134

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 135 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 191

[Close]

BLAST of MC00g_new0371 vs. NCBI nr
Match: CAP11904.1 (RNA polymerase beta subunit, partial [Acorus calamus] >CAP11905.1 RNA polymerase beta subunit, partial [Acorus gramineus])

HSP 1 Score: 236 bits (602), Expect = 2.75e-77
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI  RNQDIGIGL+NRFITF+ QP+YIRTPFTCRSTSWIC+LCYGRSPTHGDLVELGEA
Sbjct: 15  RCIAARNQDIGIGLVNRFITFRAQPVYIRTPFTCRSTSWICQLCYGRSPTHGDLVELGEA 74

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNE+LVHPTRTRH
Sbjct: 75  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEELVHPTRTRH 131

[Close]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL
Match: B0BEF6 (DNA-directed RNA polymerase (Fragment) OS=Begonia conchifolia OX=212713 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 6.45e-80
Identity = 117/135 (86.67%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 6   PRCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 65
           PRC+GI+NQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGE
Sbjct: 14  PRCVGIQNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGE 73

Query: 66  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH-- 125
           AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNE+ VHPTRTRH  
Sbjct: 74  AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNENWVHPTRTRHGH 133

Query: 126 VKVQCYNLMWTNIPS 138
               CY  ++  I S
Sbjct: 134 PAFLCYINLYVTIES 148

[Close]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL
Match: B0BEF7 (DNA-directed RNA polymerase (Fragment) OS=Begonia plagioneura OX=476164 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.30e-79
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCIGI+NQDIGIGLINRFITFQTQPI IRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA
Sbjct: 15  RCIGIQNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 74

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNE+LVHPTRTRH
Sbjct: 75  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNENLVHPTRTRH 131

[Close]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL
Match: B0BEG8 (DNA-directed RNA polymerase (Fragment) OS=Sophora microphylla OX=70607 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 2.94e-78
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI IRNQDIGIGL+NRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVELGEA
Sbjct: 75  RCIAIRNQDIGIGLLNRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEA 134

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 135 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 191

[Close]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL
Match: B0BEG9 (DNA-directed RNA polymerase (Fragment) OS=Sophora toromiro OX=85268 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 2.94e-78
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI IRNQDIGIGL+NRFITFQTQPI IRTPFTCR+TSWICRLCYGRSPTHGDLVELGEA
Sbjct: 75  RCIAIRNQDIGIGLLNRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEA 134

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPTRTRH
Sbjct: 135 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRH 191

[Close]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL
Match: B0BEF2 (DNA-directed RNA polymerase (Fragment) OS=Acorus calamus OX=4465 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 236 bits (602), Expect = 1.33e-77
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RCI  RNQDIGIGL+NRFITF+ QP+YIRTPFTCRSTSWIC+LCYGRSPTHGDLVELGEA
Sbjct: 15  RCIAARNQDIGIGLVNRFITFRAQPVYIRTPFTCRSTSWICQLCYGRSPTHGDLVELGEA 74

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 123
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNE+LVHPTRTRH
Sbjct: 75  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEELVHPTRTRH 131

[Close]

BLAST of MC00g_new0371 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 106/117 (90.60%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 7   RCIGIRNQDIGIGLINRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 66
           RC+  RNQD+GIGL+NR ITF TQ I IRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA
Sbjct: 260 RCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEA 319

Query: 67  VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRH 124
           VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NGKIKFNEDLVHPTRTRH
Sbjct: 320 VGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRTRH 376

[Close]

BLAST of MC00g_new0371 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 61   VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 93
            +E G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct: 1018 IEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGV 1049

[Close]

BLAST of MC00g_new0371 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 61   VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 93
            +E G A+G I  QSIGEPGTQ+TL+TFH  GV
Sbjct: 1035 IEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGV 1066

[Close]

BLAST of MC00g_new0371 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 53   RSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGG 92
            +S     L + GE VG++A QS+GEP TQ+TL TFH  G
Sbjct: 1144 KSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG 1182

[Close]

BLAST of MC00g_new0371 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 60   LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 93
            LV  GE +G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:

BLAST of MC00g_new0371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	9.5e-66	88.89	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
A8SE78	1.8e-64	86.67	DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum OX=4428 GN=...	[more]
Q49L08	6.8e-64	94.92	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
Q09X27	2.6e-63	94.87	DNA-directed RNA polymerase subunit beta'' OS=Morus indica OX=248361 GN=rpoC2 PE...	[more]
Q8S8Y1	4.4e-63	94.07	DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna OX=33113 GN=rpoC...	[more]

BLAST of MC00g_new0371 vs. NCBI nr


Match Name	E-value	Identity	Description
CAP11908.1	1.33e-79	86.67	RNA polymerase beta subunit, partial [Begonia conchifolia]	[more]
CAP11909.1	2.69e-79	97.44	RNA polymerase beta subunit, partial [Begonia plagioneura]	[more]
CAP11921.1	6.08e-78	95.73	RNA polymerase beta subunit, partial [Sophora toromiro]	[more]
CAP11920.1	6.08e-78	95.73	RNA polymerase beta subunit, partial [Sophora microphylla]	[more]
CAP11904.1	2.75e-77	92.31	RNA polymerase beta subunit, partial [Acorus calamus] >CAP11905.1 RNA polymerase...	[more]

BLAST of MC00g_new0371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B0BEF6	6.45e-80	86.67	DNA-directed RNA polymerase (Fragment) OS=Begonia conchifolia OX=212713 GN=rpoC2...	[more]
B0BEF7	1.30e-79	97.44	DNA-directed RNA polymerase (Fragment) OS=Begonia plagioneura OX=476164 GN=rpoC2...	[more]
B0BEG8	2.94e-78	95.73	DNA-directed RNA polymerase (Fragment) OS=Sophora microphylla OX=70607 GN=rpoC2 ...	[more]
B0BEG9	2.94e-78	95.73	DNA-directed RNA polymerase (Fragment) OS=Sophora toromiro OX=85268 GN=rpoC2 PE=...	[more]
B0BEF2	1.33e-77	92.31	DNA-directed RNA polymerase (Fragment) OS=Acorus calamus OX=4465 GN=rpoC2 PE=4 S...	[more]

BLAST of MC00g_new0371 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	5.5e-61	90.60	DNA-directed RNA polymerase family protein	[more]
AT5G60040.1	3.0e-06	65.63	nuclear RNA polymerase C1	[more]
AT5G60040.2	3.0e-06	65.63	nuclear RNA polymerase C1	[more]
AT3G57660.1	1.1e-05	51.28	nuclear RNA polymerase A1	[more]
AT4G35800.1	1.9e-05	63.64	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 19..114 e-value: 3.1E-19 score: 69.4
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 6..120
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 6..120
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 7..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0371.1	MC00g_new0371.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding