Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGTAGGATTTTTATTGTTTTAGTCCAATTCTTTTCGTGTTTGGTTTCTGGTTCTGCGTGCTTGTAGCCCCATTAAGTGTATATGGATCTGCTCAAGCCTATGTAAAGCCACTTTCATGGTGTTTTTATATGTGGACAATGGGAAATGCATAATTCTCTGTTATTATTTTTTATGTTATCTATCTCTTCATAGTAGAACTTAGAGAGTCTGTTGAAAATAAGACAGTTTTCATTCTAATGGTGAATGTATATAAATTTGATGTTGTTGTCTTCCTTTTTTTCTCTCTGTTTCTTTCCTATTCATCTTTTTATGGCTCTTTCCAAAGGGAATTTTGGATCTGCAACCCTCTAAATTTCCAACAACTGGTAACACATCATTAAACTCGAGGAACCTTTGAAGAGCAATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGAGCAAAAAGATAACTCCTAGGTAGCATGTTGCTTCAGCCTATTTAAAGGCACTTTTTTGTTTCTCTTGGGGTGCAGTTTATGGAAAACACATATTTTGGGTTTAGGCATGTCGAAAGGTAGTAGACAGGATTTCTTTTAGTGGTAAGCCAAAATTTTGAGAGTTGTGTACTCGAGGTTTCTATTTTACTTGTATTTTTGTGATCATTTTCATAGTAAACTTGTTGAGTTTGTGAACGACAGGACATACTCAAAGTGTGACCTCGTACAAATTTGCAATTATTTCTCCTCACTTTTCCTTTCTTTGTTGTTTACCTTTGGTTTAAATATCATTCTAGTCTATGAACTTTTAGGGTCGTTCCATTTTGGTACTTGAACTCTTGTTATTTTGGACCTTTTTTTTTCTTTTCCATTATTTTCTCAATAAAAGTTTGGTTTCTCATGCCAAAAAAAAAAAAAAAGAAAAATTGGTCATTAAACTTTCAAAATGTCTATTTTAGTCTCTGAACTTTAAAAAATAACCATTTTGGTTCTTATCTTTATTCTTCTTTTAACAAATTAACAATGTGGGTTCGAGTATGTGTATGAATACATTAACGTGAGCATGTATTTAAACAACAGAGGTTGAATGCAAGTATTGTGAAGCAGATGTTAGGTGGAAAAATATAGTATGGACCAAAGGATTATTTTTTGAAAATTTTGGAACTAAAATAGATATTATAAAAGTTCAAGACCAAA
mRNA sequence
ATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGA
Coding sequence (CDS)
ATGGCTAGCTTTGATGGATTTACTATTGACAAATTTGATGGGACAGACTTTGATTACTGGAAGATGCAGATAAAGGATTTTATATATGTCATGGACAAGAAATTTCATCTACCATTGAAAGGAAAACCAGAAGATATGAAAGAAGAAGATTGGAAGCATCTTGACAGAAAAGTACTAGGAATTATTCGCTCGACTTTGTCAAAGAACGTCGTTCACCATGTGGTAAATGAGACAACGACGGTTGGTCTGATGAAAACCTTGTCAGACATATATGAGAAGCCCTATGCGAACAAGTTTTGTCTTTTGACAAAACTCTTTGATTTAAAAATGGCCGATGGTGTGCCTTTTGTTGAACATTTGAATGAATTCAATAGGATAATCAACAAGTTAATCTCTCTGAAGGTTGAATTCGACGAAGAACCGAAAGCTATCATTTTGTTGATATCTTTACCCGATAGTTGGGAAGTAATGAAAGTAACTACAACCTACTCTTTTGGTACTGGAAAGTTGAAAATTGTAGATATTATAGATGCAGCTTTTGCAGAAGAGATTCGTAGAAGGGATTTTGGTGTGACTTTTACTCCGATTTCAAGCTTCAAAGCCAAAGGGAGAGGGAAAAATATTGACAATAAGCCTTGTAAAGGCAAAGGCAACAAAGGTAGAGGAAAAGGTAAGCAAGATATTGAGTGCTACTACTGCCACAAGAAGGGTCACATAAAAGCAAACTGTAGAGAGTTGAAATGA
Protein sequence
MASFDGFTIDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYANKFCLLTKLFDLKMADGVPFVEHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRRDFGVTFTPISSFKAKGRGKNIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKANCRELK
Homology
BLAST of MC00g_new0365 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 76/244 (31.15%), Postives = 131/244 (53.69%), Query Frame = 0
Query: 7 FTIDKFDGTD-FDYWKMQIKDFIYVMDKKFHLPL---KGKPEDMKEEDWKHLDRKVLGII 66
+ + KF+G + F W+ +++D + + + H L KP+ MK EDW LD + I
Sbjct: 6 YEVAKFNGDNGFSTWQRRMRDLL--IQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAI 65
Query: 67 RSTLSKNVVHHVVNETTTVGLMKTLSDIY-EKPYANKFCLLTKLFDLKMADGVPFVEHLN 126
R LS +VV+++++E T G+ L +Y K NK L +L+ L M++G F+ HLN
Sbjct: 66 RLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLN 125
Query: 127 EFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFA 186
FN +I +L +L V+ +EE KAI+LL SLP S++ + TT G +++ D+ A
Sbjct: 126 VFNGLITQLANLGVKIEEEDKAILLLNSLPSSYD--NLATTILHGKTTIELKDVTSALLL 185
Query: 187 -EEIRRRDFGVTFTPISSFKAKGRGKNIDNKPCKGKGNKGRGKGKQDI-ECYYCHKKGHI 244
E++R++ I+ + + ++ +N G K + + K + CY C++ GH
Sbjct: 186 NEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHF 245
BLAST of MC00g_new0365 vs. NCBI nr
Match:
RVW48802.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 220 bits (561), Expect = 2.79e-66
Identity = 120/248 (48.39%), Postives = 164/248 (66.13%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
I+KFDGTDF YW+MQI+D++Y +K HLPL G KP+ MK E+W LDR+VLG+IR TLS
Sbjct: 11 IEKFDGTDFAYWRMQIEDYLYG--RKLHLPLLGTKPKSMKAEEWALLDRQVLGVIRLTLS 70
Query: 69 KNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
++V H+VV E TT LMK LS +YEKP AN K L+ KLF+LKMA+ +HLNEFN I
Sbjct: 71 RSVAHNVVKEKTTTNLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTI 130
Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
N+L ++++FD+E +A+I+L SLP+SWE M++T + S G KLK DI D AEEIRR
Sbjct: 131 TNQLSFVEIDFDDEIRALIVLASLPNSWEAMRMTVSNSTGKKKLKYNDIRDLILAEEIRR 190
Query: 189 RDFGVTFTPISSFKAKGRGKNIDNKPCKGKGN-------KGRGKGKQDIECYYCHKKGHI 247
RD G T S+ + RG+ + +G+ N + + + Q ++C+ C K GH
Sbjct: 191 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 250
BLAST of MC00g_new0365 vs. NCBI nr
Match:
KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 233 bits (595), Expect = 3.13e-66
Identity = 124/241 (51.45%), Postives = 163/241 (67.63%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSK 68
I KFDGTDF +W+MQI+D++Y KK H PL KPE M +E+W LDR+VLG+IR TLSK
Sbjct: 11 IGKFDGTDFAFWRMQIEDYLYG--KKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSK 70
Query: 69 NVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRII 128
NV H+V E TT GLMK LSD+YEKP AN K L+ KLF LKM +G P H+NEFN I+
Sbjct: 71 NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 130
Query: 129 NKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRR 188
N+L S+++EFD+E +A+IL+ SLP+SWE M+ + S G KLK VD+ D EE+RR
Sbjct: 131 NQLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRI 190
Query: 189 DFGVTFTPISSFKAKGRGK-----NIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKAN 243
D G T T S+F + RG+ N + K + KG+ K ++ +EC+ C K GH K+N
Sbjct: 191 DTGETSTS-SAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 248
BLAST of MC00g_new0365 vs. NCBI nr
Match:
KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 233 bits (593), Expect = 5.60e-66
Identity = 124/241 (51.45%), Postives = 163/241 (67.63%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSK 68
I KFDGTDF +W+MQI+D++Y KK H PL KPE M +E+W LDR+VLG+IR TLSK
Sbjct: 11 IGKFDGTDFAFWRMQIEDYLYG--KKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSK 70
Query: 69 NVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRII 128
NV H+V E TT GLMK LSD+YEKP AN K L+ KLF LKM +G P H+NEFN I+
Sbjct: 71 NVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIV 130
Query: 129 NKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRRR 188
N+L S+++EFD+E +A+ILL SLP+SWE M+ + S G KLK VD+ D EE+RR
Sbjct: 131 NQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRRI 190
Query: 189 DFGVTFTPISSFKAKGRGK-----NIDNKPCKGKGNKGRGKGKQDIECYYCHKKGHIKAN 243
D G T + S+F + RG+ N + K + KG+ K ++ +EC+ C K GH K+N
Sbjct: 191 DTGET-SMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKTGHFKSN 248
BLAST of MC00g_new0365 vs. NCBI nr
Match:
CAN75500.1 (hypothetical protein VITISV_034155 [Vitis vinifera])
HSP 1 Score: 220 bits (560), Expect = 6.06e-66
Identity = 120/248 (48.39%), Postives = 162/248 (65.32%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
I+KFDGTDF YW+MQI+D++Y +K HLPL G KPE MK E+W LDR+VLG+IR TLS
Sbjct: 11 IEKFDGTDFAYWRMQIEDYLYG--RKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLS 70
Query: 69 KNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
+++ H+VV E TT LMK LS +YEKP AN K L+ KLF+LKMA+ +HLNEFN I
Sbjct: 71 RSIAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTI 130
Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
N+L S+++EFD+E A+I+L SLP+SWE M++ + S G KLK DI D EEIRR
Sbjct: 131 TNQLSSVEIEFDDEIHALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILVEEIRR 190
Query: 189 RDFGVTFTPISSFKAKGRGKNIDNKPCKGKGN-------KGRGKGKQDIECYYCHKKGHI 247
RD G T S+ + RG+ + +G+ N + + + Q ++C+ C K GH
Sbjct: 191 RDAGETSGSGSALNLETRGRGNNKNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 250
BLAST of MC00g_new0365 vs. NCBI nr
Match:
RVW12987.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 222 bits (565), Expect = 1.30e-65
Identity = 121/248 (48.79%), Postives = 164/248 (66.13%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
I+KFDGTDF YW+MQI+D++Y +K HLPL G KPE MK E+W LDR+VLG+IR TLS
Sbjct: 11 IEKFDGTDFAYWRMQIEDYLYG--RKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLS 70
Query: 69 KNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
++V H+VV E TT LMK LS +YEKP AN K L+ KLF+LKMA+ +HLNEFN I
Sbjct: 71 RSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTI 130
Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
N+L S++++FD+E +A+I+L SLP+SWE M++ + S G KLK DI D AEEIRR
Sbjct: 131 TNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRR 190
Query: 189 RDFGVTFTPISSFKAKGRGKNIDNKPCKGKGN-------KGRGKGKQDIECYYCHKKGHI 247
RD G T S+ + RG+ + +G+ N + + + Q ++C+ C K GH
Sbjct: 191 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 250
BLAST of MC00g_new0365 vs. ExPASy TrEMBL
Match:
A0A0D3AEM1 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)
HSP 1 Score: 235 bits (599), Expect = 1.46e-73
Identity = 130/252 (51.59%), Postives = 170/252 (67.46%), Query Frame = 0
Query: 1 MASFDGF--TIDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKV 60
M DG +I KFDGTD+ +W+MQI+D++Y KK H PL KPE M +++W+ LDR+V
Sbjct: 1 MGGEDGLAHSIGKFDGTDYAFWRMQIEDYLYG--KKLHQPLSKKPEKMDQDEWELLDRQV 60
Query: 61 LGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFV 120
LG+IR TLSKNV H+VV E TT GLMK LSD+YEKP AN K L+ KLF LKM +G
Sbjct: 61 LGVIRLTLSKNVAHNVVKEKTTEGLMKVLSDMYEKPSANSKVFLMKKLFHLKMEEGGLVT 120
Query: 121 EHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIID 180
H+NEFN I+N+L S+++EF++E +A+ILL SLP+SWE M+V + S GT KLK D+ D
Sbjct: 121 AHINEFNTIVNQLSSVEIEFEDEVRALILLASLPNSWESMRVAVSNSVGTQKLKFNDVRD 180
Query: 181 AAFAEEIRRRDFGVTFTPISSFKAKGRGKNID-----NKPCKGKGNKGRGKGKQDIECYY 240
AEE+RR D G T S+F + RG+N D N K + +G+ K +Q EC+
Sbjct: 181 RILAEEVRRIDSGEASTS-SAFNVENRGRNPDRNNRSNGRSKSRNGRGQSKFRQPAECWN 240
Query: 241 CHKKGHIKANCR 244
C K GHIK NCR
Sbjct: 241 CGKIGHIKKNCR 249
BLAST of MC00g_new0365 vs. ExPASy TrEMBL
Match:
A0A0D3DMW7 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)
HSP 1 Score: 232 bits (592), Expect = 2.49e-72
Identity = 128/252 (50.79%), Postives = 166/252 (65.87%), Query Frame = 0
Query: 1 MASFDGFT--IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKV 60
M DG T I KFDGTD+ +W+MQI+D++Y KK H PL KPE M +++W+ LDR+V
Sbjct: 2 MGGEDGSTHSIGKFDGTDYAFWRMQIEDYLYG--KKLHQPLSKKPEKMDQDEWELLDRQV 61
Query: 61 LGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFV 120
LG+IR TLSKNV H++ E TT GLMK LSD+YEKP N K L+ KLF LKM +G
Sbjct: 62 LGVIRLTLSKNVTHNIAKEKTTEGLMKVLSDMYEKPSVNNKVFLMKKLFHLKMEEGGLVA 121
Query: 121 EHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIID 180
H+NEFN I+N+L S+++EFD+E +A+ILL SLP+SWE M+ S GT KLK D+ D
Sbjct: 122 AHVNEFNTIVNQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVNNSVGTQKLKFNDVRD 181
Query: 181 AAFAEEIRRRDFGVTFTPISSFKAKGRGKNID-----NKPCKGKGNKGRGKGKQDIECYY 240
AEE+RR D G T T S+F + RG+N D N K + +G+ K +Q EC+
Sbjct: 182 RILAEEVRRIDSGETSTS-SAFNVENRGRNPDRNNRSNGRSKSRNGRGQSKFRQPAECWN 241
Query: 241 CHKKGHIKANCR 244
C GHIK NCR
Sbjct: 242 CGNTGHIKKNCR 250
BLAST of MC00g_new0365 vs. ExPASy TrEMBL
Match:
A0A2N9GZ62 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32486 PE=4 SV=1)
HSP 1 Score: 233 bits (593), Expect = 6.19e-70
Identity = 130/257 (50.58%), Postives = 175/257 (68.09%), Query Frame = 0
Query: 1 MASFDGFT--IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGK-PEDMKEEDWKHLDRK 60
M DG T I+KFDGTDF YWKMQI+D++Y KK HLPL GK P+ M++ +W LDR+
Sbjct: 1 MTGEDGKTSGIEKFDGTDFGYWKMQIEDYLYG--KKLHLPLLGKKPDKMEDAEWALLDRQ 60
Query: 61 VLGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPF 120
VLG+IR TLS++V H+VV ETTTVGLM LS +YEKP AN K L+ KLF+LKMA+G
Sbjct: 61 VLGVIRLTLSRSVAHNVVKETTTVGLMTALSGMYEKPSANNKVHLMKKLFNLKMAEGAAV 120
Query: 121 VEHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDII 180
+HLNEFN I N+L S+++EFD+E +A+I+L SLP+SWE M++ + S G GKLK DI
Sbjct: 121 AKHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSIGKGKLKYDDIR 180
Query: 181 DAAFAEEIRRRDFGVTFTPISSFKAKGRGKNID----NKPCKGKGNKGRGKGK--QDIEC 240
D +EE+RRRD + +F + RG+N + N+ +K R K + + EC
Sbjct: 181 DLILSEEVRRRDACIDNAEGQAFVTENRGRNRNKWRNNRATFNDRSKSRDKSQHTETREC 240
Query: 241 YYCHKKGHIKANCRELK 247
++C KKGHI+ NCR +
Sbjct: 241 FHCGKKGHIRINCRHWR 255
BLAST of MC00g_new0365 vs. ExPASy TrEMBL
Match:
A0A2N9G6J0 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26138 PE=4 SV=1)
HSP 1 Score: 229 bits (583), Expect = 8.45e-69
Identity = 128/257 (49.81%), Postives = 175/257 (68.09%), Query Frame = 0
Query: 1 MASFDGFT--IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGK-PEDMKEEDWKHLDRK 60
M DG T I+KFDGTDF YWKMQI+D++Y KK HLPL GK P+ M++ +W LDR+
Sbjct: 1 MTGEDGKTSGIEKFDGTDFGYWKMQIEDYLYG--KKLHLPLLGKKPDKMEDAEWALLDRQ 60
Query: 61 VLGIIRSTLSKNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPF 120
VLG+IR TLS++V H+VV ETTTVGLM LS +YEKP AN K L+ KLF+LKMA+G
Sbjct: 61 VLGVIRLTLSRSVAHNVVKETTTVGLMTALSGMYEKPSANNKVHLMKKLFNLKMAEGAAV 120
Query: 121 VEHLNEFNRIINKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDII 180
+HLNEFN I N+L S+++EFD+E +A+I+L SLP+SWE M++ + S G GKLK DI
Sbjct: 121 AKHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYDDIR 180
Query: 181 DAAFAEEIRRRDFGVTFTPISSFKAKGRGKNID----NKPCKGKGNKGRGKGK--QDIEC 240
D +EE+RRRD + +F + RG++ + N+ +K R K + + EC
Sbjct: 181 DLILSEEVRRRDACIDNAEGQAFVTENRGRSRNKWRNNRATFNDRSKSRDKSQHTETREC 240
Query: 241 YYCHKKGHIKANCRELK 247
++C KKGHI+ NC+ +
Sbjct: 241 FHCGKKGHIRINCKHWR 255
BLAST of MC00g_new0365 vs. ExPASy TrEMBL
Match:
A0A2N9EE40 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5139 PE=4 SV=1)
HSP 1 Score: 237 bits (604), Expect = 1.56e-68
Identity = 130/245 (53.06%), Postives = 171/245 (69.80%), Query Frame = 0
Query: 9 IDKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKG-KPEDMKEEDWKHLDRKVLGIIRSTLS 68
I+KFDGTDF YW+MQI+D++Y KK HLPL G KPEDM++ +W LDR+VLG+IR TLS
Sbjct: 11 IEKFDGTDFGYWRMQIEDYLYG--KKLHLPLLGEKPEDMEDAEWTLLDRQVLGVIRLTLS 70
Query: 69 KNVVHHVVNETTTVGLMKTLSDIYEKPYAN-KFCLLTKLFDLKMADGVPFVEHLNEFNRI 128
+ V H+VV E TT LM L +YEKP AN K L+ KLF+LKMA+G +HLNEFN I
Sbjct: 71 RTVAHNVVKEKTTAELMTALCGMYEKPSANNKVHLMKKLFNLKMAEGTAVAQHLNEFNTI 130
Query: 129 INKLISLKVEFDEEPKAIILLISLPDSWEVMKVTTTYSFGTGKLKIVDIIDAAFAEEIRR 188
N+L S+++EFD+E +A+I+L SLP+SWE M++ + S G GKLK DI D EE+RR
Sbjct: 131 TNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRR 190
Query: 189 RDFGVTFTPISSF--KAKGRGKNIDNKPCKGKGNKGRGKGK--QDIECYYCHKKGHIKAN 247
RD G T + S+ +A+GRGK+ + + K KGR K K + +EC+ C K GHI+ N
Sbjct: 191 RDAGETSSSGSALNLEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKN 250
BLAST of MC00g_new0365 vs. TAIR 10
Match:
AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 89.7 bits (221), Expect = 3.5e-18
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 10 DKFDGTDFDYWKMQIKDFIYVMDKKFHLPLKGKPEDMKEEDWKHLDRKVLGIIRSTLSKN 69
DK DGT + + +M+I+D++Y KK H PL K E M ++DW L R+VL +IR T+SKN
Sbjct: 7 DKVDGTSYSFCRMKIEDYLY--GKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKN 66
Query: 70 VVHHVVNETTTVGLMKTLSDIYEKPYAN 98
+ H+V E + GLMK LSDIY+KP N
Sbjct: 67 IAHNVAKEKSPDGLMKVLSDIYKKPSTN 92
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 2.9e-25 | 31.15 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
RVW48802.1 | 2.79e-66 | 48.39 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
KAG7561662.1 | 3.13e-66 | 51.45 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
KAG7584790.1 | 5.60e-66 | 51.45 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
CAN75500.1 | 6.06e-66 | 48.39 | hypothetical protein VITISV_034155 [Vitis vinifera] | [more] |
RVW12987.1 | 1.30e-65 | 48.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
A0A0D3AEM1 | 1.46e-73 | 51.59 | CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376... | [more] |
A0A0D3DMW7 | 2.49e-72 | 50.79 | CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376... | [more] |
A0A2N9GZ62 | 6.19e-70 | 50.58 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3248... | [more] |
A0A2N9G6J0 | 8.45e-69 | 49.81 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2613... | [more] |
A0A2N9EE40 | 1.56e-68 | 53.06 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5139 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G29785.1 | 3.5e-18 | 50.00 | unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... | [more] |