MC00g_new0360 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0360
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Location	scaffold163: 277347 .. 278230 (+)
RNA-Seq Expression	MC00g_new0360
Synteny	MC00g_new0360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAATATGTTAGGAGGAGGCTTGTGGAGAATGGTTGGGAGGCGTTGTTTGCCCCAACTACGCAGGTATCCGAGGCTTTAGTCAAGGAGTTTTATGCTACCATCAATCCCAACCGACGGGATGTAGTGAGAGTACGGGGTAAAGTAGTAAAATTTTTGCCTTCCATTATTAACACTCACTATGGTTTGTTGGATGTCTTTAATTCTATAGGTAATGAGATTTTGGTGCATCCATCAGACGAGCAAGTGGAGGAGGCGCGTAGGCTTATTTGTAAACAACACAATACATGGACCGTCTCAACCACGGGGAAGCTTTCCTTAAAGCCCCTTGACATCAATGAGCAAGCGACGGTTTGGACATATGTGGTGAAGAACCAGTTGATCCCCACTTCTCATGACTCCTCTATTAAGCGCAATAGGGCGATGATGGTGTACATCCTCATGAAAGGTATTGAGTTCAACTTTGAGGAGCTCATAAGGAATGAGATTCGAAGTTGCACGGAATGGTAGGTCCACTTGTTTTTCCTGGACTAATAACTAAGCAATGCTTGCAAGCGGAGTAGAAGTCAATGATGTAGTGACTCCTAAGAAGCCGGTCACATCCCTAAGGAGAGTTTGGAGGTATTCCATTGTTCGAGAGGAAGATTCTCCTTACCGTTGCGGATCCCAAGACCCGAGGGGTGGTGACTAGGGAGCAATATTATGAGCTTAGGCACAAGTACGAGCTTCTTTTGGTTACTCAATATGCCACATGTGAGTTCCTTAAGAAGATATACGGTAATGAAGCACTTTCATTCCTCGATGAGCTTGCGGCCGATTTACCATCTTCTTCCTGTCTTCCTACCGATTCCATCGGCGATGAGTCTTCCGATGATGAATAG

mRNA sequence

ATGTCAGAATATGTTAGGAGGAGGCTTGTGGAGAATGGTTGGGAGGCGTTGTTTGCCCCAACTACGCAGGTATCCGAGGCTTTAGTCAAGGAGTTTTATGCTACCATCAATCCCAACCGACGGGATGTAGTGAGAGTACGGGGTAATGAGATTTTGGTGCATCCATCAGACGAGCAAGTGGAGGAGGCGCGTAGGCTTATTTGTAAACAACACAATACATGGACCGTCTCAACCACGGGGAAGCTTTCCTTAAAGCCCCTTGACATCAATGAGCAAGCGACGGTTTGGACATATGTGGTGAAGAACCAGTTGATCCCCACTTCTCATGACTCCTCTATTAAGCGCAATAGGGCGATGATGGTGTACATCCTCATGAAAGGAGAGTTTGGAGGTATTCCATTGTTCGAGAGGAAGATTCTCCTTACCGTTGCGGATCCCAAGACCCGAGGGGTGGTGACTAGGGAGCAATATTATGAGCTTAGGCACAAGTACGAGCTTCTTTTGGTTACTCAATATGCCACATGTGAGTTCCTTAAGAAGATATACGGTAATGAAGCACTTTCATTCCTCGATGAGCTTGCGGCCGATTTACCATCTTCTTCCTGTCTTCCTACCGATTCCATCGGCGATGAGTCTTCCGATGATGAATAG

Coding sequence (CDS)

ATGTCAGAATATGTTAGGAGGAGGCTTGTGGAGAATGGTTGGGAGGCGTTGTTTGCCCCAACTACGCAGGTATCCGAGGCTTTAGTCAAGGAGTTTTATGCTACCATCAATCCCAACCGACGGGATGTAGTGAGAGTACGGGGTAATGAGATTTTGGTGCATCCATCAGACGAGCAAGTGGAGGAGGCGCGTAGGCTTATTTGTAAACAACACAATACATGGACCGTCTCAACCACGGGGAAGCTTTCCTTAAAGCCCCTTGACATCAATGAGCAAGCGACGGTTTGGACATATGTGGTGAAGAACCAGTTGATCCCCACTTCTCATGACTCCTCTATTAAGCGCAATAGGGCGATGATGGTGTACATCCTCATGAAAGGAGAGTTTGGAGGTATTCCATTGTTCGAGAGGAAGATTCTCCTTACCGTTGCGGATCCCAAGACCCGAGGGGTGGTGACTAGGGAGCAATATTATGAGCTTAGGCACAAGTACGAGCTTCTTTTGGTTACTCAATATGCCACATGTGAGTTCCTTAAGAAGATATACGGTAATGAAGCACTTTCATTCCTCGATGAGCTTGCGGCCGATTTACCATCTTCTTCCTGTCTTCCTACCGATTCCATCGGCGATGAGTCTTCCGATGATGAATAG

Protein sequence

MSEYVRRRLVENGWEALFAPTTQVSEALVKEFYATINPNRRDVVRVRGNEILVHPSDEQVEEARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQLIPTSHDSSIKRNRAMMVYILMKGEFGGIPLFERKILLTVADPKTRGVVTREQYYELRHKYELLLVTQYATCEFLKKIYGNEALSFLDELAADLPSSSCLPTDSIGDESSDDE

Homology

[Close]

BLAST of MC00g_new0360 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 315 bits (807), Expect = 1.07e-95
Identity = 173/256 (67.58%), Postives = 189/256 (73.83%), Query Frame = 0


Query: 3    EYVRRRLVENGWEALFAPTTQVSEALVKEFYATINPNRRDVVRVRGNEILVHPSDEQVEE 62
            EYVR+R+VENGWE LFAP T+VSEALVKEFY  INPNR D VRVRGNEILVHPSDEQVEE
Sbjct: 1142 EYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVRVRGNEILVHPSDEQVEE 1201

Query: 63   ARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQLIPTSHDSSIKRNRAMMVY 122
            ARRLIC+ H TWT+ST GKLSLKPLDINEQATVW YVVKN+LIPTS+DSSIKRNRAM+VY
Sbjct: 1202 ARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVY 1261

Query: 123  ILMKG---EFG---------------GIPLFERKILL----------------------- 182
            IL+KG    FG               G+   +  +++                       
Sbjct: 1262 ILVKGVEFNFGELIRNEIQSCSEKLAGVEAADANVVMPKKPFRSLRKVRGYSIVREEDSP 1321

Query: 183  -TVADPKTRGVVTREQYYELRHKYELLLVTQYATCEFLKKIYGNEALSFLDELAADLPSS 216
             T ADP+TRGVVTREQY ELRHKYELLLVTQ ATC FLKKIYG+EA SF DELAADLPSS
Sbjct: 1322 ITAADPETRGVVTREQYDELRHKYELLLVTQRATCAFLKKIYGDEAPSFPDELAADLPSS 1381

[Close]

BLAST of MC00g_new0360 vs. NCBI nr
Match: XP_022159289.1 (uncharacterized protein LOC111025702 [Momordica charantia])

HSP 1 Score: 106 bits (264), Expect = 9.85e-25
Identity = 74/168 (44.05%), Postives = 88/168 (52.38%), Query Frame = 0


Query: 95  VWTYVVKNQLIPTSHDSSIKRNRAMMVYILMKG-EFG-----------------GIPLFE 154
           +W+YVVKN LI TS+DSSI++ R M+VYILMKG EF                  G  +F 
Sbjct: 1   MWSYVVKNLLISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFP 60

Query: 155 RKIL----------------------------------------LTVADPKTRGVVTREQ 201
            +I+                                        +T ADP TRGVVTREQ
Sbjct: 61  ARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQ 120

[Close]

BLAST of MC00g_new0360 vs. NCBI nr
Match: XP_022156786.1 (uncharacterized protein LOC111023620 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.00e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 3   EYVRRRLVENGWEALFAPTTQVSEALVKEFYATINPNRRDVVRVR 47
           +Y++RRL+ENGWE LFAPT +VSE LVKEFYATINPNR D +  R
Sbjct: 178 KYIKRRLLENGWETLFAPTMRVSETLVKEFYATINPNRGDALVFR 222

[Close]

BLAST of MC00g_new0360 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 2.70e-10
Identity = 39/143 (27.27%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 9   LVENGWEALFAPTTQVSEALVKEFYA----------------------TINP--NRRDVV 68
           ++E+GWE  +   + +   +V+ FY                        IN     +D+ 
Sbjct: 196 VLEHGWETFYQCLSIIIPTVVRAFYKGRLHGTKDAVIMKGCIVPFSARDINELYKMKDIP 255

Query: 69  RVRGNEILVHPSDEQVEEARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQL 127
              GN+I+  P +E++E+A R + +    W+VS  G  +L    +  +A +W Y+VK ++
Sbjct: 256 DASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRI 315

[Close]

BLAST of MC00g_new0360 vs. NCBI nr
Match: KGN54872.1 (hypothetical protein Csa_012255 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.36e-08
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 48  GNEILVHPSDEQVEEARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQLIPT 107
           G++IL +P  + +E A + +        ++ TGK  L P ++N +A +W   VK +++PT
Sbjct: 6   GHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPT 65

Query: 108 SHDSSIKRNRAMMVYILMK 126
            HD++I   R M+VY +MK
Sbjct: 66  RHDNNISMERVMLVYCIMK 84

[Close]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 315 bits (807), Expect = 5.17e-96
Identity = 173/256 (67.58%), Postives = 189/256 (73.83%), Query Frame = 0


Query: 3    EYVRRRLVENGWEALFAPTTQVSEALVKEFYATINPNRRDVVRVRGNEILVHPSDEQVEE 62
            EYVR+R+VENGWE LFAP T+VSEALVKEFY  INPNR D VRVRGNEILVHPSDEQVEE
Sbjct: 1142 EYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVRVRGNEILVHPSDEQVEE 1201

Query: 63   ARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQLIPTSHDSSIKRNRAMMVY 122
            ARRLIC+ H TWT+ST GKLSLKPLDINEQATVW YVVKN+LIPTS+DSSIKRNRAM+VY
Sbjct: 1202 ARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVY 1261

Query: 123  ILMKG---EFG---------------GIPLFERKILL----------------------- 182
            IL+KG    FG               G+   +  +++                       
Sbjct: 1262 ILVKGVEFNFGELIRNEIQSCSEKLAGVEAADANVVMPKKPFRSLRKVRGYSIVREEDSP 1321

Query: 183  -TVADPKTRGVVTREQYYELRHKYELLLVTQYATCEFLKKIYGNEALSFLDELAADLPSS 216
             T ADP+TRGVVTREQY ELRHKYELLLVTQ ATC FLKKIYG+EA SF DELAADLPSS
Sbjct: 1322 ITAADPETRGVVTREQYDELRHKYELLLVTQRATCAFLKKIYGDEAPSFPDELAADLPSS 1381

[Close]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL
Match: A0A6J1E204 (uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025702 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 4.77e-25
Identity = 74/168 (44.05%), Postives = 88/168 (52.38%), Query Frame = 0


Query: 95  VWTYVVKNQLIPTSHDSSIKRNRAMMVYILMKG-EFG-----------------GIPLFE 154
           +W+YVVKN LI TS+DSSI++ R M+VYILMKG EF                  G  +F 
Sbjct: 1   MWSYVVKNLLISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFP 60

Query: 155 RKIL----------------------------------------LTVADPKTRGVVTREQ 201
            +I+                                        +T ADP TRGVVTREQ
Sbjct: 61  ARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQ 120

[Close]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL
Match: A0A6J1DW11 (uncharacterized protein LOC111023620 OS=Momordica charantia OX=3673 GN=LOC111023620 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.45e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 3   EYVRRRLVENGWEALFAPTTQVSEALVKEFYATINPNRRDVVRVR 47
           +Y++RRL+ENGWE LFAPT +VSE LVKEFYATINPNR D +  R
Sbjct: 178 KYIKRRLLENGWETLFAPTMRVSETLVKEFYATINPNRGDALVFR 222

[Close]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL
Match: A0A0A0L2P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.11e-08
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 48  GNEILVHPSDEQVEEARRLICKQHNTWTVSTTGKLSLKPLDINEQATVWTYVVKNQLIPT 107
           G++IL +P  + +E A + +        ++ TGK  L P ++N +A +W   VK +++PT
Sbjct: 6   GHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPT 65

Query: 108 SHDSSIKRNRAMMVYILMK 126
            HD++I   R M+VY +MK
Sbjct: 66  RHDNNISMERVMLVYCIMK 84

[Close]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL
Match: A0A6B9V900 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=DS421_19g656920 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.18e-07
Identity = 46/158 (29.11%), Postives = 67/158 (42.41%), Query Frame = 0


Query: 2   SEYVRRRLVEN--GWEALFAPTTQVSEALVKEFYATINPNRRD----VVRVRGNEILVHP 61
           +EY+   +  N  GW  L  P  +V E+LV+EFYA   P        +  VRG  I   P
Sbjct: 60  NEYLEINIEINNRGWAILCNPPRKVVESLVREFYANAVPQPGQPYGYISYVRGKSIDYSP 119

Query: 62  S------------------------DEQVEEARRLICKQHNTWTVSTTG-KLSLKPLDIN 121
           S                        D   +E    IC  H  W     G    L+ +D++
Sbjct: 120 SSIERMLMVKRTSSTRSYEERMKQQDPAFDEILNEICVLHMQWIKDKDGIPNQLRKMDLS 179

Query: 122 EQATVWTYVVKNQLIPTSHDSSIKRNRAMMVYILMKGE 128
            QA  W   V+  LIPTS+ S + + R +++Y ++KGE
Sbjct: 180 PQARGWLEFVRRSLIPTSNTSEVTKERVVLIYSILKGE 217

The following BLAST results are available for this feature:

BLAST of MC00g_new0360 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154847.1	1.07e-95	67.58	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
XP_022159289.1	9.85e-25	44.05	uncharacterized protein LOC111025702 [Momordica charantia]	[more]
XP_022156786.1	3.00e-11	71.11	uncharacterized protein LOC111023620 [Momordica charantia]	[more]
XP_038904385.1	2.70e-10	27.27	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
KGN54872.1	4.36e-08	34.18	hypothetical protein Csa_012255 [Cucumis sativus]	[more]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMT3	5.17e-96	67.58	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]
A0A6J1E204	4.77e-25	44.05	uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DW11	1.45e-11	71.11	uncharacterized protein LOC111023620 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0L2P0	2.11e-08	34.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1	[more]
A0A6B9V900	1.18e-07	29.11	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=DS421_19g656920 PE=4 SV=1	[more]

BLAST of MC00g_new0360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0360.1	MC00g_new0360.1	mRNA