MC00g0485 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g0485
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
Locationscaffold196: 315146 .. 315361 (-)
RNA-Seq ExpressionMC00g0485
SyntenyMC00g0485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCAAGATTTTGGAATACGATCCCGATACTGATGTATGTGGCTCTCAGAAAAACCTCGCTCGTGTTTCGTGACGTTTCGCTCTTGATAAGCGATCTCATCTCCGTCGCCGCCTCCGCCGTCAGCTACTCCCGCTGGCTTTTCCGGCCAACCGTCGCGGTTCCCGCCAGGTACTCTCCGCCTCCGGTGTCGTCGATGATCGTTCGCCAATATCGT

mRNA sequence

TCTTCAAGATTTTGGAATACGATCCCGATACTGATGTATGTGGCTCTCAGAAAAACCTCGCTCGTGTTTCGTGACGTTTCGCTCTTGATAAGCGATCTCATCTCCGTCGCCGCCTCCGCCGTCAGCTACTCCCGCTGGCTTTTCCGGCCAACCGTCGCGGTTCCCGCCAGGTACTCTCCGCCTCCGGTGTCGTCGATGATCGTTCGCCAATATCGT

Coding sequence (CDS)

TCTTCAAGATTTTGGAATACGATCCCGATACTGATGTATGTGGCTCTCAGAAAAACCTCGCTCGTGTTTCGTGACGTTTCGCTCTTGATAAGCGATCTCATCTCCGTCGCCGCCTCCGCCGTCAGCTACTCCCGCTGGCTTTTCCGGCCAACCGTCGCGGTTCCCGCCAGGTACTCTCCGCCTCCGGTGTCGTCGATGATCGTTCGCCAATATCGT

Protein sequence

SSRFWNTIPILMYVALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPARYSPPPVSSMIVRQYR
Homology
BLAST of MC00g0485 vs. NCBI nr
Match: KAG6603548.1 (hypothetical protein SDJN03_04157, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 3.14e-17
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 1  SSRFWNTIPILMYVALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPARYSP 60
          SSRF ++I ILM VALRKTSL+FR VS+LI+DLI+VAASA+ +SRW  RPTV +  RYS 
Sbjct: 3  SSRFGDSITILMCVALRKTSLIFRHVSILITDLIAVAASAIRFSRWFLRPTVQLSERYST 62

Query: 61 PPVSSMIVRQYR 72
            +S MI+R  R
Sbjct: 63 --MSLMIIRNDR 72

BLAST of MC00g0485 vs. NCBI nr
Match: KAG6595568.1 (hypothetical protein SDJN03_12121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 2.01e-11
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  SSRFWNTIPILMYVALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAV 54
          SSRF NTIPILM VALRK SLVFRDVSL I DLI++AASA+ +SR L  P V+V
Sbjct: 3  SSRFGNTIPILMCVALRKPSLVFRDVSLFIIDLIALAASAIRFSRSL-SPEVSV 55

BLAST of MC00g0485 vs. NCBI nr
Match: KGN54430.1 (hypothetical protein Csa_012790 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.33e-09
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 3  RFWNTIPILMY-VALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPA----- 62
          RF NTIPILM  V LRKT L+FR  S  I+DLI++A+SA+ + RW FR ++ V +     
Sbjct: 5  RFGNTIPILMMRVPLRKTFLLFRCASTFITDLIALASSAIRFIRWHFRSSLQVISSSADD 64

Query: 63 -RYSPPPVSSMIVRQYR 72
           RYSP  VS MI+R +R
Sbjct: 65 NRYSP--VSLMILRPHR 79

BLAST of MC00g0485 vs. NCBI nr
Match: DAD26394.1 (TPA_asm: hypothetical protein HUJ06_027862 [Nelumbo nucifera])

HSP 1 Score: 47.8 bits (112), Expect = 5.98e-05
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 3  RFWNTIPILMYVALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPARYSPPP 62
          RF + I IL+ V LRK+    +D+  L+ DLISV  S + +S  +FR + A   RYSP  
Sbjct: 3  RFEDGISILLGVILRKSICRLQDLGYLVMDLISVIVSTIRFSELVFRRSTATSGRYSP-- 62

Query: 63 VSSMIVRQYR 72
          +SSMI R  R
Sbjct: 63 MSSMIARHDR 70

BLAST of MC00g0485 vs. ExPASy TrEMBL
Match: A0A0A0KXR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G326540 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.10e-09
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 3  RFWNTIPILMY-VALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPA----- 62
          RF NTIPILM  V LRKT L+FR  S  I+DLI++A+SA+ + RW FR ++ V +     
Sbjct: 5  RFGNTIPILMMRVPLRKTFLLFRCASTFITDLIALASSAIRFIRWHFRSSLQVISSSADD 64

Query: 63 -RYSPPPVSSMIVRQYR 72
           RYSP  VS MI+R +R
Sbjct: 65 NRYSP--VSLMILRPHR 79

BLAST of MC00g0485 vs. ExPASy TrEMBL
Match: A0A7N2M690 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.65e-07
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 6  NTIPILMYVALRKTSLVFRDVSLLISDLISVAASAVSYSRWLFRPTVAVPARYSPPPVSS 65
          + I +L+ V LRK+  V+++ ++L+ D + V  S + +SR+ FRPT  V ARYSP  +SS
Sbjct: 7  DVISVLVNVILRKSIYVYKEFAVLMVDFLPVMVSTIRFSRFFFRPTTVVSARYSP--MSS 66

Query: 66 MIVRQYR 72
          M+ R  R
Sbjct: 67 MVARHDR 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603548.13.14e-1762.50hypothetical protein SDJN03_04157, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595568.12.01e-1172.22hypothetical protein SDJN03_12121, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54430.14.33e-0951.95hypothetical protein Csa_012790 [Cucumis sativus][more]
DAD26394.15.98e-0544.29TPA_asm: hypothetical protein HUJ06_027862 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
A0A0A0KXR72.10e-0951.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G326540 PE=4 SV=1[more]
A0A7N2M6904.65e-0741.79Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g0485.1MC00g0485.1mRNA