MC00g0396 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0396
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	scaffold163: 586350 .. 586493 (+)
RNA-Seq Expression	MC00g0396
Synteny	MC00g0396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGGAGGATGCTCTAGTGGGAACAGAAGTAAGTCCACGTGACATAATTGATTACATTCTAAACAAGCATGGAATTGATATTAGTTATGCCAAGGCCTGGAGAGGAAAGAAGGTTTTAAACACATTAAGGGGGTCACCTGAA

mRNA sequence

AAAGAGGAGGATGCTCTAGTGGGAACAGAAGTAAGTCCACGTGACATAATTGATTACATTCTAAACAAGCATGGAATTGATATTAGTTATGCCAAGGCCTGGAGAGGAAAGAAGGTTTTAAACACATTAAGGGGGTCACCTGAA

Coding sequence (CDS)

AAAGAGGAGGATGCTCTAGTGGGAACAGAAGTAAGTCCACGTGACATAATTGATTACATTCTAAACAAGCATGGAATTGATATTAGTTATGCCAAGGCCTGGAGAGGAAAGAAGGTTTTAAACACATTAAGGGGGTCACCTGAA

Protein sequence

KEEDALVGTEVSPRDIIDYILNKHGIDISYAKAWRGKKVLNTLRGSPE

Homology

[Close]

BLAST of MC00g0396 vs. NCBI nr
Match: KAA0065926.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYK15091.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.60e-06
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 6  LVGTEVS-PRDIIDYILNKHGIDISYAKAWRGKKV-LNTLRGSPE 48
          LVG+E+S P+DI+ YI  +HG+ ISY KAWR ++V L+ + GSPE
Sbjct: 16 LVGSELSTPKDIVHYIRAEHGLSISYQKAWRAREVALDDIHGSPE 60

[Close]

BLAST of MC00g0396 vs. NCBI nr
Match: TYK05770.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 3.22e-06
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  KEEDALVGTEVS-PRDIIDYILNKHGIDISYAKAWRGKKV-LNTLRGSPE 48
          K + +L G+E+S P+DI+ YI  KHG+ ISY KAWR ++V L+ +RGS E
Sbjct: 34 KNKISLAGSELSTPKDIVRYIRAKHGLSISYQKAWRAREVALDEIRGSQE 83

[Close]

BLAST of MC00g0396 vs. NCBI nr
Match: RVW15562.1 (hypothetical protein CK203_077755 [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 3.58e-06
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 111 VGRQYCPKDIIGDIQNKYGVQISYDKAWRAREFALNSIRGSPE 153

[Close]

BLAST of MC00g0396 vs. NCBI nr
Match: RVW86034.1 (hypothetical protein CK203_041448 [Vitis vinifera])

HSP 1 Score: 51.2 bits (121), Expect = 1.10e-05
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 241 VGHQYRPKDIIGDIQNKYGVQISYDKAWRAREFALNSIRGSPE 283

[Close]

BLAST of MC00g0396 vs. NCBI nr
Match: CAN73564.1 (hypothetical protein VITISV_024011 [Vitis vinifera])

HSP 1 Score: 51.2 bits (121), Expect = 1.11e-05
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 209 VGXQYRPKDIIGGIQNKYGVQISYDKAWRXREFALNSIRGSPE 251

[Close]

BLAST of MC00g0396 vs. ExPASy TrEMBL
Match: A0A5D3CTB5 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00150 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.72e-07
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 6  LVGTEVS-PRDIIDYILNKHGIDISYAKAWRGKKV-LNTLRGSPE 48
          LVG+E+S P+DI+ YI  +HG+ ISY KAWR ++V L+ + GSPE
Sbjct: 16 LVGSELSTPKDIVHYIRAEHGLSISYQKAWRAREVALDDIHGSPE 60

[Close]

BLAST of MC00g0396 vs. ExPASy TrEMBL
Match: A0A5D3C360 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002660 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.56e-06
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  KEEDALVGTEVS-PRDIIDYILNKHGIDISYAKAWRGKKV-LNTLRGSPE 48
          K + +L G+E+S P+DI+ YI  KHG+ ISY KAWR ++V L+ +RGS E
Sbjct: 34 KNKISLAGSELSTPKDIVRYIRAKHGLSISYQKAWRAREVALDEIRGSQE 83

[Close]

BLAST of MC00g0396 vs. ExPASy TrEMBL
Match: A0A438BX35 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_077755 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.73e-06
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 111 VGRQYCPKDIIGDIQNKYGVQISYDKAWRAREFALNSIRGSPE 153

[Close]

BLAST of MC00g0396 vs. ExPASy TrEMBL
Match: A0A438HNL1 (MULE domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_041448 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.34e-06
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 241 VGHQYRPKDIIGDIQNKYGVQISYDKAWRAREFALNSIRGSPE 283

[Close]

BLAST of MC00g0396 vs. ExPASy TrEMBL
Match: A5AMK7 (DBD_Tnp_Mut domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_024011 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.35e-06
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   VGTEVSPRDIIDYILNKHGIDISYAKAWRGKK-VLNTLRGSPE 48
           VG +  P+DII  I NK+G+ ISY KAWR ++  LN++RGSPE
Sbjct: 209 VGXQYRPKDIIGGIQNKYGVQISYDKAWRXREFALNSIRGSPE 251

The following BLAST results are available for this feature:

BLAST of MC00g0396 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0396 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065926.1	1.60e-06	55.56	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYK15091....	[more]
TYK05770.1	3.22e-06	52.00	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]
RVW15562.1	3.58e-06	55.81	hypothetical protein CK203_077755 [Vitis vinifera]	[more]
RVW86034.1	1.10e-05	55.81	hypothetical protein CK203_041448 [Vitis vinifera]	[more]
CAN73564.1	1.11e-05	55.81	hypothetical protein VITISV_024011 [Vitis vinifera]	[more]

BLAST of MC00g0396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTB5	7.72e-07	55.56	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3C360	1.56e-06	52.00	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A438BX35	1.73e-06	55.81	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_077755 PE=4 SV=1	[more]
A0A438HNL1	5.34e-06	55.81	MULE domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_041448 PE=4 S...	[more]
A5AMK7	5.35e-06	55.81	DBD_Tnp_Mut domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_02401...	[more]

BLAST of MC00g0396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0396.1	MC00g0396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding