MC00g0395 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0395
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold163: 533284 .. 533448 (-)
RNA-Seq Expression	MC00g0395
Synteny	MC00g0395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGTTGAAGATTAAGAAGTTTATATTGAAGCACCACCATGATATTGTCCTTCTTCAAGAAACCAAATTGCAGCAGCTTGACGAGAAAGTTATAAAATCATTGTGGAGTTCAAATGATGTTAGTTGGGTGCAGTTGAGTCTATTGGAAGATAATGAAGCTGTT

mRNA sequence

AAAAGGTTGAAGATTAAGAAGTTTATATTGAAGCACCACCATGATATTGTCCTTCTTCAAGAAACCAAATTGCAGCAGCTTGACGAGAAAGTTATAAAATCATTGTGGAGTTCAAATGATGTTAGTTGGGTGCAGTTGAGTCTATTGGAAGATAATGAAGCTGTT

Coding sequence (CDS)

AAAAGGTTGAAGATTAAGAAGTTTATATTGAAGCACCACCATGATATTGTCCTTCTTCAAGAAACCAAATTGCAGCAGCTTGACGAGAAAGTTATAAAATCATTGTGGAGTTCAAATGATGTTAGTTGGGTGCAGTTGAGTCTATTGGAAGATAATGAAGCTGTT

Protein sequence

KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWVQLSLLEDNEAV

Homology

[Close]

BLAST of MC00g0395 vs. NCBI nr
Match: XP_022154822.1 (uncharacterized protein LOC111021983 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 7.55e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWVQLS 47
          KRLK+KK I+K + D+VLLQETKLQQ+D  +IKSLWSS DV W  L+
Sbjct: 16 KRLKVKKTIMKSNPDVVLLQETKLQQIDRIIIKSLWSSKDVGWACLN 62

[Close]

BLAST of MC00g0395 vs. NCBI nr
Match: KAA0066335.1 (uncharacterized protein E6C27_scaffold21G003960 [Cucumis melo var. makuwa] >TYK00944.1 uncharacterized protein E5676_scaffold602G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 5.99e-05
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSW 43
          KR+ +KK I  HH D+V++QE+K++  D    KS+WSS ++ W
Sbjct: 11 KRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGW 53

[Close]

BLAST of MC00g0395 vs. NCBI nr
Match: KAG2695986.1 (hypothetical protein I3760_07G037600 [Carya illinoinensis])

HSP 1 Score: 46.6 bits (109), Expect = 7.26e-05
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWVQLS 47
          KRL+I+  + +   DIV LQETKL+ +D ++++SLWS   V W  L+
Sbjct: 18 KRLRIRNMLREWKVDIVCLQETKLKTIDRRIVRSLWSGVHVDWAYLA 64

[Close]

BLAST of MC00g0395 vs. NCBI nr
Match: KAA0063088.1 (uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK02044.1 uncharacterized protein E5676_scaffold680G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 9.75e-05
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSW 43
           KR+ +K+F+ K H DIVL+QE+K ++ D   IKSLWSS D  W
Sbjct: 220 KRIALKRFLEKIHLDIVLIQESKKEEFDIVFIKSLWSSKDNGW 262

[Close]

BLAST of MC00g0395 vs. NCBI nr
Match: KAG6659538.1 (hypothetical protein CIPAW_03G042600 [Carya illinoinensis])

HSP 1 Score: 46.2 bits (108), Expect = 1.03e-04
Identity = 20/47 (42.55%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWVQLS 47
          KRL+I+  + +   D V LQETKL+ +D ++++SLWS + V W+ L+
Sbjct: 18 KRLRIRNLLREWKVDTVCLQETKLKMIDRRIVRSLWSGSHVDWLFLT 64

[Close]

BLAST of MC00g0395 vs. ExPASy TrEMBL
Match: A0A6J1DMQ9 (uncharacterized protein LOC111021983 OS=Momordica charantia OX=3673 GN=LOC111021983 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.66e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWVQLS 47
          KRLK+KK I+K + D+VLLQETKLQQ+D  +IKSLWSS DV W  L+
Sbjct: 16 KRLKVKKTIMKSNPDVVLLQETKLQQIDRIIIKSLWSSKDVGWACLN 62

[Close]

BLAST of MC00g0395 vs. ExPASy TrEMBL
Match: A0A5A7VKQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001190 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.90e-05
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSW 43
          KR+ +KK I  HH D+V++QE+K++  D    KS+WSS ++ W
Sbjct: 11 KRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGW 53

[Close]

BLAST of MC00g0395 vs. ExPASy TrEMBL
Match: A0A5A7V639 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00270 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.72e-05
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSW 43
           KR+ +K+F+ K H DIVL+QE+K ++ D   IKSLWSS D  W
Sbjct: 220 KRIALKRFLEKIHLDIVLIQESKKEEFDIVFIKSLWSSKDNGW 262

[Close]

BLAST of MC00g0395 vs. ExPASy TrEMBL
Match: A0A5A7TAF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002130 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.32e-05
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 1   KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSW 43
           KRL  ++F+ KH+ ++VL+QE+K ++ D   IKSLWS  D+ W
Sbjct: 107 KRLAFRRFLKKHNPEVVLIQESKNEEFDISFIKSLWSFEDIGW 149

[Close]

BLAST of MC00g0395 vs. ExPASy TrEMBL
Match: F4NCJ8 (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.60e-05
Identity = 18/44 (40.91%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 1  KRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSNDVSWV 44
          KR  ++K I KH    V +QETK++++ EK+++S+W S++V W+
Sbjct: 16 KRSSLRKHITKHEPTFVFIQETKMEEMPEKIMRSIWKSDNVEWI 59

The following BLAST results are available for this feature:

BLAST of MC00g0395 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154822.1	7.55e-11	65.96	uncharacterized protein LOC111021983 [Momordica charantia]	[more]
KAA0066335.1	5.99e-05	44.19	uncharacterized protein E6C27_scaffold21G003960 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG2695986.1	7.26e-05	44.68	hypothetical protein I3760_07G037600 [Carya illinoinensis]	[more]
KAA0063088.1	9.75e-05	53.49	uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG6659538.1	1.03e-04	42.55	hypothetical protein CIPAW_03G042600 [Carya illinoinensis]	[more]

BLAST of MC00g0395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMQ9	3.66e-11	65.96	uncharacterized protein LOC111021983 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7VKQ0	2.90e-05	44.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V639	4.72e-05	53.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TAF5	6.32e-05	46.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
F4NCJ8	6.60e-05	40.91	Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris...	[more]

BLAST of MC00g0395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 4..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0395.1	MC00g0395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004519	endonuclease activity