LsiUNG000400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	LsiUNG000400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr00: 730006 .. 730338 (+)
RNA-Seq Expression	LsiUNG000400
Synteny	LsiUNG000400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATGAATTGCCTAACATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGAATAATCATGGTTATGAAACCCCCTCTAGTAGAGGCAAATCATGTTGCCTATACGTCCCGCGGAGGTGGTCGGCCGAATTGACTCCCCCGTCGTACGAGTCGATTAAAATCGACGACGATATTAGCTCTTCTTCGCACAAGAAGGCCAAGACTCGCCGCATTCATAGTGACTGTAGCGGGAACGAGCCGAGGTTGGTGAGGAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGATTTGGGATTGAGAGATCAAAAGAAAGGGAGATTCCATTGA

mRNA sequence

ATGAGCATGAATTGCCTAACATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGAATAATCATGGTTATGAAACCCCCTCTAGTAGAGGCAAATCATGTTGCCTATACGTCCCGCGGAGGTGGTCGGCCGAATTGACTCCCCCGTCGTACGAGTCGATTAAAATCGACGACGATATTAGCTCTTCTTCGCACAAGAAGGCCAAGACTCGCCGCATTCATAGTGACTGTAGCGGGAACGAGCCGAGGTTGGTGAGGAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGATTTGGGATTGAGAGATCAAAAGAAAGGGAGATTCCATTGA

Coding sequence (CDS)

ATGAGCATGAATTGCCTAACATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGAATAATCATGGTTATGAAACCCCCTCTAGTAGAGGCAAATCATGTTGCCTATACGTCCCGCGGAGGTGGTCGGCCGAATTGACTCCCCCGTCGTACGAGTCGATTAAAATCGACGACGATATTAGCTCTTCTTCGCACAAGAAGGCCAAGACTCGCCGCATTCATAGTGACTGTAGCGGGAACGAGCCGAGGTTGGTGAGGAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGATTTGGGATTGAGAGATCAAAAGAAAGGGAGATTCCATTGA

Protein sequence

MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH

Homology

[Close]

BLAST of LsiUNG000400 vs. ExPASy TrEMBL
Match: A0A0A0LEC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902280 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.8e-44
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD 60
           M+MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD
Sbjct: 1   MTMNCLTCQALPRTQSDRE-NRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDD 60

Query: 61  --ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH 111
             ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSFEDLGLR QKKGRFH
Sbjct: 61  HHISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]

BLAST of LsiUNG000400 vs. ExPASy TrEMBL
Match: A0A5A7T546 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G001040 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDI 60
           M+MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DI
Sbjct: 1   MTMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDI 60

Query: 61  SSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLGLRD-QKKGRFH 111
           SSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLGLRD QKKGRFH
Sbjct: 61  SSSDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 111

[Close]

BLAST of LsiUNG000400 vs. ExPASy TrEMBL
Match: A0A5D3E5T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004480 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 93/111 (83.78%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISS 62
           MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISS
Sbjct: 1   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 60

Query: 63  SS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLGLRD-QKKGRFH 111
           S  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLGLRD QKKGRFH
Sbjct: 61  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 109

[Close]

BLAST of LsiUNG000400 vs. ExPASy TrEMBL
Match: A0A1S3CRL3 (uncharacterized protein LOC103503546 OS=Cucumis melo OX=3656 GN=LOC103503546 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 93/111 (83.78%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISS 62
           MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISS
Sbjct: 1   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 60

Query: 63  SS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLGLRD-QKKGRFH 111
           S  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLGLRD QKKGRFH
Sbjct: 61  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 109

[Close]

BLAST of LsiUNG000400 vs. ExPASy TrEMBL
Match: A0A6J1DZN2 (uncharacterized protein LOC111026067 OS=Momordica charantia OX=3673 GN=LOC111026067 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-32
Identity = 85/127 (66.93%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENN----HGYETPSS--RGKSCCLYVPRRWSAELTPPSYESI 60
           MSMNCLTCQALPRTQSDRENN    + YET SS  RGKSCCL+V RRWSAELTP SY  I
Sbjct: 1   MSMNCLTCQALPRTQSDRENNNNNYYAYETSSSRGRGKSCCLHVTRRWSAELTPTSYGHI 60

Query: 61  KIDDDIS--------SSSHKKAKTRRIHSDCSG---NEPRLVRSSGMRRDWSFEDLGLRD 111
           K   D +        S S KK K R + S       NEPRLVRSSGMRRDWSFEDL LRD
Sbjct: 61  KTTADNAREGCSSRKSFSDKKVKDRYLRSGSMNEKENEPRLVRSSGMRRDWSFEDLRLRD 120

[Close]

BLAST of LsiUNG000400 vs. NCBI nr
Match: XP_038887010.1 (uncharacterized protein LOC120077178 [Benincasa hispida])

HSP 1 Score: 201.1 bits (510), Expect = 5.1e-48
Identity = 99/110 (90.00%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDI 60
           MSMNCLTCQALPRTQSDRE NHGYET SSRGKSCCLYV RRWSAELTPPSYESIK DDDI
Sbjct: 1   MSMNCLTCQALPRTQSDRE-NHGYETSSSRGKSCCLYVSRRWSAELTPPSYESIKNDDDI 60

Query: 61  SSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH 111
           SSS  KKAK RR+HSDC  NEPRLVRSSGMRRDWSFEDLGLRDQKK RFH
Sbjct: 61  SSSLQKKAKNRRVHSDCGRNEPRLVRSSGMRRDWSFEDLGLRDQKKVRFH 109

[Close]

BLAST of LsiUNG000400 vs. NCBI nr
Match: KGN60385.1 (hypothetical protein Csa_002007 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 5.8e-44
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD 60
           M+MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD
Sbjct: 1   MTMNCLTCQALPRTQSDRE-NRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDD 60

Query: 61  --ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH 111
             ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSFEDLGLR QKKGRFH
Sbjct: 61  HHISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]

BLAST of LsiUNG000400 vs. NCBI nr
Match: XP_031737602.1 (uncharacterized protein LOC116402474 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.9e-43
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD-- 62
           MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD  
Sbjct: 1   MNCLTCQALPRTQSDRE-NRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDHH 60

Query: 63  ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH 111
           ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSFEDLGLR QKKGRFH
Sbjct: 61  ISSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 111

[Close]

BLAST of LsiUNG000400 vs. NCBI nr
Match: KAA0038574.1 (uncharacterized protein E6C27_scaffold92G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDI 60
           M+MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DI
Sbjct: 1   MTMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDI 60

Query: 61  SSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLGLRD-QKKGRFH 111
           SSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLGLRD QKKGRFH
Sbjct: 61  SSSDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 111

[Close]

BLAST of LsiUNG000400 vs. NCBI nr
Match: XP_008465978.2 (PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo] >TYK31168.1 uncharacterized protein E5676_scaffold455G004480 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-42
Identity = 93/111 (83.78%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISS 62
           MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISS
Sbjct: 1   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 60

Query: 63  SS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLGLRD-QKKGRFH 111
           S  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLGLRD QKKGRFH
Sbjct: 61  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 109

[Close]

BLAST of LsiUNG000400 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-14
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHG------YETPSSRGKSCCL--YVPRRWSAELTPPSYE 60
           MS+NCL+CQALPRT S+++ +         E  +  GK+CC+     R WS  L+P  YE
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60

Query: 61  SIKIDDDISSSSHKKAKTRRIHS-DCSG-------------NEPRLVRSSGMRRDWSFED 107
             KI    SS +HK  K ++IH    SG              +P+LVRS+G+RR+WSFE+
Sbjct: 61  --KIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFEN 120

[Close]

BLAST of LsiUNG000400 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 1   MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDI 60
           MS+NCL C  L RT SDR+     ++      +   +       E    +  S+ +   +
Sbjct: 1   MSLNCLACHILQRTDSDRDMGSRKDSSFKENFATSAF-------EKMVRNRSSLPVVRRV 60

Query: 61  SSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDL 100
            +  H++  +  I      +EP+LVRSSG+RRDWSFEDL
Sbjct: 61  -NKGHRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDL 91

The following BLAST results are available for this feature:

BLAST of LsiUNG000400 vs.


Match Name	E-value	Identity	Description

BLAST of LsiUNG000400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEC0	2.8e-44	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902280 PE=4 SV=1	[more]
A0A5A7T546	5.3e-43	83.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E5T4	2.0e-42	83.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CRL3	2.0e-42	83.78	uncharacterized protein LOC103503546 OS=Cucumis melo OX=3656 GN=LOC103503546 PE=...	[more]
A0A6J1DZN2	4.2e-32	66.93	uncharacterized protein LOC111026067 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of LsiUNG000400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887010.1	5.1e-48	90.00	uncharacterized protein LOC120077178 [Benincasa hispida]	[more]
KGN60385.1	5.8e-44	83.33	hypothetical protein Csa_002007 [Cucumis sativus]	[more]
XP_031737602.1	2.9e-43	83.93	uncharacterized protein LOC116402474 [Cucumis sativus]	[more]
KAA0038574.1	1.1e-42	83.19	uncharacterized protein E6C27_scaffold92G001040 [Cucumis melo var. makuwa]	[more]
XP_008465978.2	4.2e-42	83.78	PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo] >TYK31168.1 uncha...	[more]

BLAST of LsiUNG000400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46770.1	8.8e-14	39.69	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT2G35215.1	1.8e-06	33.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..85
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000400.1	LsiUNG000400.1	mRNA