Lsi11G017010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G017010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Squamosa promoter binding-like protein
Location	chr11: 25177923 .. 25178828 (+)
RNA-Seq Expression	Lsi11G017010
Synteny	Lsi11G017010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTGGTAAAATTGAAACAACAATTCACCATCATCAGAAACAGAAGGAGAGAGTCATGGAGAAGGAGAGGGTGAAGAAGGAGGTTATGGTGGGAGATGAAGATGGAGAATATGATGAGGACAAGAAGAGGAAAGGTATAATAATTGGTGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCAGCAGCGGAGGCGGCGGGATGCGGTGTTGTCAAGCTGAGAAGTGTGTGGCTGATCTTAATGATGCCAAACCATATCATAGGAGGCATAATGTCTGTGAAGTTCATGCCAAATCTCAGGTTGTGCTTGTGGGTGGGTTCAAGCAGAGATTTTGTCAGCAATGTAGCAGGTTTGGAACAAACAAAACTTTGATTTTTGACTTGAAAGTTGATATAACTTTTTTGGTCAATCAATGATTTAATAAGATACCAGAGTCGAAGAGGTTCGTGTTCAAACTTCTGCAATGTTATATACTCCTCAATTATTATAAATTTTCACTTGTAGGGCCTTCTATATATTTTAAGCCCACAAGTAAGGAGTGTATTAGATATAATATTTACTTTCGCCCATCAATTTAAGCTTTTGGGTTAATCAGTGTTCTAAGTTATTTTTGACACAATAATACCATTTGGAAGATGTCTAAGTTCTTGAGTTTGGAATTTGAGTGTAGATTTCTTGAACTATCAGAATTCGACGAAGCGAAAAGGAGTTGTCGGAGACGTCTTGCCGGCCACAACGAGCGTCGAAGGAAGATATCGGCTGAGTCTAGTGTCGAATGCTCAATCCGGAAAGGGAGTGGAACACAGATGAAGGACAGTGTCTGTGGGCAGGTTGAAGATAAGGGAAGAATTCAAATGACCATTCAAGAAAATGCTGCATATAAACACTTCCAGATCAGATAA

mRNA sequence

ATGGATGTTGGTAAAATTGAAACAACAATTCACCATCATCAGAAACAGAAGGAGAGAGTCATGGAGAAGGAGAGGGTGAAGAAGGAGGTTATGGTGGGAGATGAAGATGGAGAATATGATGAGGACAAGAAGAGGAAAGGTATAATAATTGGTGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCAGCAGCGGAGGCGGCGGGATGCGGTGTTGTCAAGCTGAGAAGTGTGTGGCTGATCTTAATGATGCCAAACCATATCATAGGAGGCATAATGTCTGTGAAGTTCATGCCAAATCTCAGGTTGTGCTTGTGGAATTCGACGAAGCGAAAAGGAGTTGTCGGAGACGTCTTGCCGGCCACAACGAGCGTCGAAGGAAGATATCGGCTGAGTCTAGTGTCGAATGCTCAATCCGGAAAGGGAGTGGAACACAGATGAAGGACAGTGTCTGTGGGCAGGTTGAAGATAAGGGAAGAATTCAAATGACCATTCAAGAAAATGCTGCATATAAACACTTCCAGATCAGATAA

Coding sequence (CDS)

ATGGATGTTGGTAAAATTGAAACAACAATTCACCATCATCAGAAACAGAAGGAGAGAGTCATGGAGAAGGAGAGGGTGAAGAAGGAGGTTATGGTGGGAGATGAAGATGGAGAATATGATGAGGACAAGAAGAGGAAAGGTATAATAATTGGTGGTGGTGGCTCCGGGAAGAAGGCGGCGGGCGGCAGCAGCGGAGGCGGCGGGATGCGGTGTTGTCAAGCTGAGAAGTGTGTGGCTGATCTTAATGATGCCAAACCATATCATAGGAGGCATAATGTCTGTGAAGTTCATGCCAAATCTCAGGTTGTGCTTGTGGAATTCGACGAAGCGAAAAGGAGTTGTCGGAGACGTCTTGCCGGCCACAACGAGCGTCGAAGGAAGATATCGGCTGAGTCTAGTGTCGAATGCTCAATCCGGAAAGGGAGTGGAACACAGATGAAGGACAGTGTCTGTGGGCAGGTTGAAGATAAGGGAAGAATTCAAATGACCATTCAAGAAAATGCTGCATATAAACACTTCCAGATCAGATAA

Protein sequence

MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLVEFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQMTIQENAAYKHFQIR

Homology

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BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.8e-21
Identity = 73/171 (42.69%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 26  VKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKCVADLNDAK 85
           +KK+  + +ED E D D++ +     G    + + G  + GG +R CQ ++C AD+ +AK
Sbjct: 12  MKKKSYLVEEDMETDTDEEEE----VGRDRVRGSRGSINRGGSLRLCQVDRCTADMKEAK 71

Query: 86  PYHRRHNVCEVHAKSQVV------------------LVEFDEAKRSCRRRLAGHNERRRK 145
            YHRRH VCEVHAK+  V                  L EFDEAKRSCRRRLAGHNERRRK
Sbjct: 72  LYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 131

Query: 146 ISAESSV-ECSIRKGSGTQMKDSVCGQVEDKGRIQMTI-QENAAYKHFQIR 177
            S ES+  E S R+G   Q    V  Q +++ R++MT+   N+++K  QIR
Sbjct: 132 SSGESTYGEGSGRRGINGQ----VVMQNQERSRVEMTLPMPNSSFKRPQIR 174

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BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 0


Query: 17  KERVMEKERVKKEV---MVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQ 76
           K++      V++E+   M G+E+   DEDK++K +        ++  G S+     R CQ
Sbjct: 13  KDKATVSNLVEEEMENGMDGEEEDGGDEDKRKKVM--------ERVRGPSTDRVPSRLCQ 72

Query: 77  AEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------------EFDEAKRSCR 136
            ++C  +L +AK Y+RRH VCEVHAK+    V                  EFDEAKRSCR
Sbjct: 73  VDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCR 132

Query: 137 RRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQMTI-QENAAYKHFQ 177
           RRLAGHNERRRKIS +S  E S R+G   Q+      Q +++ R+   +   N+++K  Q
Sbjct: 133 RRLAGHNERRRKISGDSFGEGSGRRGFSGQLI-----QTQERNRVDRKLPMTNSSFKRPQ 181

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BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 33  GDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHN 92
           G+E+ +  ED K+   +     SGK+A+G +      R CQ E C A++ +AKPYHRRH 
Sbjct: 21  GEEEDDIGEDSKKTRALT---PSGKRASGST-----QRSCQVENCAAEMTNAKPYHRRHK 80

Query: 93  VCEVHAKSQVV------------------LVEFDEAKRSCRRRLAGHNERRRKISAES 133
           VCE HAK+ VV                  L EFDEAKRSCRRRLAGHNERRRK S ++
Sbjct: 81  VCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHDT 130

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BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot
Match: A2YX04 (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica OX=39946 GN=SPL15 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 53/101 (52.48%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 47  GIIIGGGGSGKKAAGGSSGGGG--MRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVL 106
           G   GGGG G    GG+SGGGG     CQ + C ADL +AK YHRRH VCE+H K+   L
Sbjct: 162 GSASGGGGGG--GGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKAL 221

Query: 107 V------------------EFDEAKRSCRRRLAGHNERRRK 128
           V                  EFDE KRSCRRRLAGHN RRRK
Sbjct: 222 VGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRK 260

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BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot
Match: Q6Z8M8 (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL15 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 53/101 (52.48%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 47  GIIIGGGGSGKKAAGGSSGGGG--MRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVL 106
           G   GGGG G    GG+SGGGG     CQ + C ADL +AK YHRRH VCE+H K+   L
Sbjct: 162 GSASGGGGGG--GGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKAL 221

Query: 107 V------------------EFDEAKRSCRRRLAGHNERRRK 128
           V                  EFDE KRSCRRRLAGHN RRRK
Sbjct: 222 VGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRK 260

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BLAST of Lsi11G017010 vs. ExPASy TrEMBL
Match: A0A6J1JPM8 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486359 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.5e-67
Identity = 145/196 (73.98%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKK 60
           MDVGKIETT   HQ+++  VMEK RVK++++V DEDGEYDEDKKRKG+I  +GGGGSGKK
Sbjct: 1   MDVGKIETT---HQQKQRVVMEKGRVKEDMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKK 60

Query: 61  AAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------- 120
           AAG   GGGGMRCCQAEKC ADL++AKPYHRRH VCEVHAKSQVVLV             
Sbjct: 61  AAG---GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSR 120

Query: 121 -----EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRI 177
                EFDE KRSCRRRLAGHNERRRKISAES+ ECSIRKG+G QMKDSVCGQ +D+GRI
Sbjct: 121 FHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGAQMKDSVCGQADDQGRI 180

[Close]

BLAST of Lsi11G017010 vs. ExPASy TrEMBL
Match: A0A6J1EWC3 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111437155 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 145/198 (73.23%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKK 60
           MDVGKIETT   HQ+++  VMEK RVK+ ++V DEDGEYDEDKKRKG+I  +GGGGSGKK
Sbjct: 1   MDVGKIETT---HQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKK 60

Query: 61  AAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------- 120
           AAG   GGGGMRCCQAEKC ADL++AKPYHRRH VCEVHAKSQVVLV             
Sbjct: 61  AAG---GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSR 120

Query: 121 -----EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGS-GTQMKD-SVCGQVEDKG 177
                EFDE KRSCRRRLAGHNERRRKISAES+ ECSIRKG+ G QMKD SVCGQ +D+G
Sbjct: 121 FHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQG 180

[Close]

BLAST of Lsi11G017010 vs. ExPASy TrEMBL
Match: A0A6P3Z3U5 (squamosa promoter-binding protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC107406208 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.7e-46
Identity = 119/201 (59.20%), Postives = 137/201 (68.16%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEY------DEDKKRKGII-IGGG 60
           MD+GKIE         KE+VM    VKKE    + D EY      +EDKKRKG++  GGG
Sbjct: 1   MDLGKIERNRQRMVIGKEKVMV---VKKE----ERDEEYEQVGCLEEDKKRKGVVGGGGG 60

Query: 61  GSGKKAAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV-------- 120
           GSG+K +GG  G GG+RCCQAEKC ADL DAK YHRRH VCE+HAK+QVV+V        
Sbjct: 61  GSGRKGSGG--GVGGLRCCQAEKCTADLTDAKQYHRRHKVCEIHAKAQVVVVGGLRQRFC 120

Query: 121 ----------EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVE 177
                     EFDE KRSCRRRLAGHNERRRK SAES  E S  KGS  Q+KD VCG+V+
Sbjct: 121 QQCSRFHELSEFDETKRSCRRRLAGHNERRRKNSAESPAESSSHKGSSPQLKDIVCGKVD 180

[Close]

BLAST of Lsi11G017010 vs. ExPASy TrEMBL
Match: A0A2I4E643 (squamosa promoter-binding protein 1-like OS=Juglans regia OX=51240 GN=LOC108986645 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.3e-46
Identity = 110/177 (62.15%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 21  MEKER--VKKEVMVGDEDGE-YDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKC 80
           MEK++  VKKEV+  DE+ E  +E+K++KG++ GGGG GKK      GG G+RCCQAEKC
Sbjct: 13  MEKQQKVVKKEVVESDEELEGVEEEKRKKGVMDGGGGLGKK------GGNGLRCCQAEKC 72

Query: 81  VADLNDAKPYHRRHNVCEVHAKSQVVLV------------------EFDEAKRSCRRRLA 140
            ADL+DAK YHRRH VCE HAK+QVVLV                  EFDE KRSCRRRLA
Sbjct: 73  TADLSDAKQYHRRHKVCEFHAKAQVVLVGGIRQRFCQQCSRFHELSEFDETKRSCRRRLA 132

Query: 141 GHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQMTIQENAAYKHFQIR 177
           GHNERRRK SAES  E S RKG+GTQ+KD VCGQV+D+GRIQ++I EN+ YKHFQIR
Sbjct: 133 GHNERRRKNSAESHAEGSSRKGTGTQLKDIVCGQVDDRGRIQISIHENSTYKHFQIR 183

[Close]

BLAST of Lsi11G017010 vs. ExPASy TrEMBL
Match: A0A5B7BBG5 (SBP-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_034224 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45
Identity = 114/187 (60.96%), Postives = 134/187 (71.66%), Query Frame = 0


Query: 17  KERVMEKERVKKEVMVG---DED---GEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGG-- 76
           K++ M KE+VKKE       D+D   G  ++DKK++G    GGGSGKK +GG  GGGG  
Sbjct: 9   KQKAM-KEKVKKEAAEAEDLDDDECLGASEDDKKKRG-GSSGGGSGKKGSGGGGGGGGAS 68

Query: 77  -MRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------------EFDE 136
            MRCCQAEKC ADL+DAK YHRRH VCE HAK+QVV+V                  EFDE
Sbjct: 69  TMRCCQAEKCTADLSDAKQYHRRHRVCEHHAKAQVVIVAGIRQRFCQQCSRFHEISEFDE 128

Query: 137 AKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQMTIQENAA 177
           AKRSCRRRLAGHNERRRK S++S  E S RKG+GTQ+K+ VCGQV+D+GRIQ+TIQENA 
Sbjct: 129 AKRSCRRRLAGHNERRRKNSSDSQAEGSSRKGTGTQLKEIVCGQVDDRGRIQITIQENAT 188

[Close]

BLAST of Lsi11G017010 vs. NCBI nr
Match: XP_038888920.1 (squamosa promoter-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-75
Identity = 157/194 (80.93%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAA 60
           MDVGKIETTIHHHQK +ERVME ERVKKE    DEDGEYD+DKKRKGI+IGGGGSGKKAA
Sbjct: 1   MDVGKIETTIHHHQKHRERVMENERVKKE----DEDGEYDDDKKRKGIVIGGGGSGKKAA 60

Query: 61  GGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV--------------- 120
           GGS   GGMRCCQAEKCVADLN+AKPYHRRH VCEVHAKSQVVLV               
Sbjct: 61  GGS---GGMRCCQAEKCVADLNEAKPYHRRHKVCEVHAKSQVVLVGGFKQRFCQQCSRFH 120

Query: 121 ---EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQM 177
              EFDEAKRSCRRRLAGHNERRRKISAES+ ECSIRKG+GTQMKDSVCGQV+DKGRIQM
Sbjct: 121 ELSEFDEAKRSCRRRLAGHNERRRKISAESNAECSIRKGTGTQMKDSVCGQVDDKGRIQM 180

[Close]

BLAST of Lsi11G017010 vs. NCBI nr
Match: XP_022989218.1 (squamosa promoter-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66
Identity = 145/196 (73.98%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKK 60
           MDVGKIETT   HQ+++  VMEK RVK++++V DEDGEYDEDKKRKG+I  +GGGGSGKK
Sbjct: 1   MDVGKIETT---HQQKQRVVMEKGRVKEDMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKK 60

Query: 61  AAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------- 120
           AAG   GGGGMRCCQAEKC ADL++AKPYHRRH VCEVHAKSQVVLV             
Sbjct: 61  AAG---GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSR 120

Query: 121 -----EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRI 177
                EFDE KRSCRRRLAGHNERRRKISAES+ ECSIRKG+G QMKDSVCGQ +D+GRI
Sbjct: 121 FHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGAQMKDSVCGQADDQGRI 180

[Close]

BLAST of Lsi11G017010 vs. NCBI nr
Match: XP_023531078.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-63
Identity = 143/197 (72.59%), Postives = 157/197 (79.70%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKK 60
           MDVGKIET    HQ+++  VMEK RVK+ ++V DEDGEYDEDKKRKG+I  +G GGSGKK
Sbjct: 1   MDVGKIETA---HQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGSGGSGKK 60

Query: 61  AAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------- 120
           AAG   GGGGMRCCQAEKC ADL++AKPYHRRH VCEVHAKSQVVLV             
Sbjct: 61  AAG---GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSR 120

Query: 121 -----EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGS-GTQMKDSVCGQVEDKGR 177
                EFDE KRSCRRRLAGHNERRRKISAES+ ECSIRKG+ G QMKDSVCGQ +D+GR
Sbjct: 121 FHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSVCGQADDQGR 180

[Close]

BLAST of Lsi11G017010 vs. NCBI nr
Match: XP_022930778.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata] >KAG6589255.1 Squamosa promoter-binding-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-63
Identity = 145/198 (73.23%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MDVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKK 60
           MDVGKIETT   HQ+++  VMEK RVK+ ++V DEDGEYDEDKKRKG+I  +GGGGSGKK
Sbjct: 1   MDVGKIETT---HQQKQRVVMEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKK 60

Query: 61  AAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------- 120
           AAG   GGGGMRCCQAEKC ADL++AKPYHRRH VCEVHAKSQVVLV             
Sbjct: 61  AAG---GGGGMRCCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSR 120

Query: 121 -----EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGS-GTQMKD-SVCGQVEDKG 177
                EFDE KRSCRRRLAGHNERRRKISAES+ ECSIRKG+ G QMKD SVCGQ +D+G
Sbjct: 121 FHELSEFDEMKRSCRRRLAGHNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQG 180

[Close]

BLAST of Lsi11G017010 vs. NCBI nr
Match: KAG7022956.1 (Squamosa promoter-binding-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 133/178 (74.72%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 21  MEKERVKKEVMVGDEDGEYDEDKKRKGII--IGGGGSGKKAAGGSSGGGGMRCCQAEKCV 80
           MEK RVK+ ++V DEDGEYDEDKKRKG+I  +GGGGSGKKAAG   GGGGMRCCQAEKC 
Sbjct: 1   MEKGRVKEAMVVVDEDGEYDEDKKRKGVIVSVGGGGSGKKAAG---GGGGMRCCQAEKCT 60

Query: 81  ADLNDAKPYHRRHNVCEVHAKSQVVLV------------------EFDEAKRSCRRRLAG 140
           ADL++AKPYHRRH VCEVHAKSQVVLV                  EFDE KRSCRRRLAG
Sbjct: 61  ADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAG 120

Query: 141 HNERRRKISAESSVECSIRKGS-GTQMKD-SVCGQVEDKGRIQMTIQENAAYKHFQIR 177
           HNERRRKISAES+ ECSIRKG+ G QMKD SVCGQ +D+GRIQMTIQENAAYKHFQIR
Sbjct: 121 HNERRRKISAESNAECSIRKGTGGAQMKDSSVCGQADDQGRIQMTIQENAAYKHFQIR 175

[Close]

BLAST of Lsi11G017010 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-22
Identity = 73/171 (42.69%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 26  VKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKCVADLNDAK 85
           +KK+  + +ED E D D++ +     G    + + G  + GG +R CQ ++C AD+ +AK
Sbjct: 12  MKKKSYLVEEDMETDTDEEEE----VGRDRVRGSRGSINRGGSLRLCQVDRCTADMKEAK 71

Query: 86  PYHRRHNVCEVHAKSQVV------------------LVEFDEAKRSCRRRLAGHNERRRK 145
            YHRRH VCEVHAK+  V                  L EFDEAKRSCRRRLAGHNERRRK
Sbjct: 72  LYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 131

Query: 146 ISAESSV-ECSIRKGSGTQMKDSVCGQVEDKGRIQMTI-QENAAYKHFQIR 177
            S ES+  E S R+G   Q    V  Q +++ R++MT+   N+++K  QIR
Sbjct: 132 SSGESTYGEGSGRRGINGQ----VVMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Lsi11G017010 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-22
Identity = 73/171 (42.69%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 26  VKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQAEKCVADLNDAK 85
           +KK+  + +ED E D D++ +     G    + + G  + GG +R CQ ++C AD+ +AK
Sbjct: 12  MKKKSYLVEEDMETDTDEEEE----VGRDRVRGSRGSINRGGSLRLCQVDRCTADMKEAK 71

Query: 86  PYHRRHNVCEVHAKSQVV------------------LVEFDEAKRSCRRRLAGHNERRRK 145
            YHRRH VCEVHAK+  V                  L EFDEAKRSCRRRLAGHNERRRK
Sbjct: 72  LYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 131

Query: 146 ISAESSV-ECSIRKGSGTQMKDSVCGQVEDKGRIQMTI-QENAAYKHFQIR 177
            S ES+  E S R+G   Q    V  Q +++ R++MT+   N+++K  QIR
Sbjct: 132 SSGESTYGEGSGRRGINGQ----VVMQNQERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Lsi11G017010 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-20
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 0


Query: 17  KERVMEKERVKKEV---MVGDEDGEYDEDKKRKGIIIGGGGSGKKAAGGSSGGGGMRCCQ 76
           K++      V++E+   M G+E+   DEDK++K +        ++  G S+     R CQ
Sbjct: 13  KDKATVSNLVEEEMENGMDGEEEDGGDEDKRKKVM--------ERVRGPSTDRVPSRLCQ 72

Query: 77  AEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------------EFDEAKRSCR 136
            ++C  +L +AK Y+RRH VCEVHAK+    V                  EFDEAKRSCR
Sbjct: 73  VDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCR 132

Query: 137 RRLAGHNERRRKISAESSVECSIRKGSGTQMKDSVCGQVEDKGRIQMTI-QENAAYKHFQ 177
           RRLAGHNERRRKIS +S  E S R+G   Q+      Q +++ R+   +   N+++K  Q
Sbjct: 133 RRLAGHNERRRKISGDSFGEGSGRRGFSGQLI-----QTQERNRVDRKLPMTNSSFKRPQ 181

[Close]

BLAST of Lsi11G017010 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-16
Identity = 62/169 (36.69%), Postives = 85/169 (50.30%), Query Frame = 0


Query: 2   DVGKIETTIHHHQKQKERVMEKERVKKEVMVGDEDGEYDEDKKRKGIIIGGGGSGKKAAG 61
           D G +E      +++ E   +K+R    V+  +ED   D+D  R  + +GG         
Sbjct: 56  DEGNVEIM---ERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHRLTLNLGGNNIEGNGVK 115

Query: 62  GSSGGGGMR----CCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV------------ 121
            +  GGG+     CCQ + C ADL+  K YHRRH VCE+H+K+   LV            
Sbjct: 116 KTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCS 175

Query: 122 ------EFDEAKRSCRRRLAGHNERRRKISAESSVECSIRKGSGTQMKD 149
                 EFDE KRSCRRRLAGHN+RRRK + ++        G+GT M D
Sbjct: 176 RFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTI-------GNGTSMSD 214

[Close]

BLAST of Lsi11G017010 vs. TAIR 10
Match: AT1G20980.1 (squamosa promoter binding protein-like 14 )

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-16
Identity = 47/100 (47.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 57  KKAAGGSSGGGGMRCCQAEKCVADLNDAKPYHRRHNVCEVHAKSQVVLV----------- 116
           KK   GS  GG    CQ + C  DL+ AK YHRRH VCEVH+K+   LV           
Sbjct: 106 KKVRSGSP-GGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQC 165

Query: 117 -------EFDEAKRSCRRRLAGHNERRRKISAESSVECSI 139
                  EFDE KRSCRRRLAGHN RRRK +    V   +
Sbjct: 166 SRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGV 204

The following BLAST results are available for this feature:

BLAST of Lsi11G017010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7A9	8.8e-21	42.69	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	1.1e-18	37.91	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q38741	1.8e-18	47.46	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
A2YX04	2.9e-16	52.48	Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica OX=39946...	[more]
Q6Z8M8	2.9e-16	52.48	Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Lsi11G017010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPM8	8.5e-67	73.98	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1EWC3	1.1e-63	73.23	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6P3Z3U5	3.7e-46	59.20	squamosa promoter-binding protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC1074...	[more]
A0A2I4E643	6.3e-46	62.15	squamosa promoter-binding protein 1-like OS=Juglans regia OX=51240 GN=LOC1089866...	[more]
A0A5B7BBG5	2.4e-45	60.96	SBP-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_034224...	[more]

BLAST of Lsi11G017010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888920.1	2.7e-75	80.93	squamosa promoter-binding protein 1-like [Benincasa hispida]	[more]
XP_022989218.1	1.7e-66	73.98	squamosa promoter-binding protein 1-like [Cucurbita maxima]	[more]
XP_023531078.1	1.8e-63	72.59	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930778.1	2.4e-63	73.23	squamosa promoter-binding protein 1-like [Cucurbita moschata] >KAG6589255.1 Squa...	[more]
KAG7022956.1	2.3e-58	74.72	Squamosa promoter-binding-like protein 4 [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Lsi11G017010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	6.3e-22	42.69	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	6.3e-22	42.69	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	7.7e-20	37.91	squamosa promoter binding protein-like 5	[more]
AT3G60030.1	1.8e-16	36.69	squamosa promoter-binding protein-like 12	[more]
AT1G20980.1	8.8e-16	47.00	squamosa promoter binding protein-like 14	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 68..122 e-value: 1.5E-12 score: 49.6
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 70..131
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 104..127 e-value: 1.7E-5 score: 25.0 coord: 72..105 e-value: 3.5E-8 score: 33.6
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 69..128 score: 18.520325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 104..176
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 14..105
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 104..176 coord: 14..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G017010.1	Lsi11G017010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding