Lsi11G016200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G016200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor JUNGBRUNNEN 1-like
Locationchr11: 24541579 .. 24542961 (+)
RNA-Seq ExpressionLsi11G016200
SyntenyLsi11G016200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAAGGAAATGAATGCATTGGTCTTAAGAAAACACTTGTTTATTATCGTGGATCTGCTGGAAAAGGCTCTAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTCCAGCTTCCAATAACAATCCAAACCATCTCCAACAACCCAATTCCAAGAACTTTGCTCAAGAAGCGGTAAGCCTAAATTTATCCTAATATTCCATCATCAATCATTTAGTGAAAATAGAAAAAAAAAATGTCAAACTATTTATAAAAAATAGCAAAAAAAAAAAAAAAAACACTAATAGACATTGATAGACTTCTATTAGCATCCATCAATAATAGACTTTTATTATTTCTATCACCGATAGTCCCTGATAGACTTATATCAATGTCTATCGCAACTATCTACAAATTTTGCTATTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTATAAACTTCCCATAATTCTTTAGAAAATTTTTAAAAATAAAACAATAAGGGAAACTATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGACGCTGAAAGAAGTTTATTAGGATCTATCCATTATAGAAATGATAGAAATCTATCGCTGATAGATGCTAATAGAAGTCTATCAATATCTATCGGTATTTTTTTTTTTTTTTTCTGTTAATAGTTTGACATTTTTTCTATCTATGAAAATTTTCCTTTTTTTCTTTTTGCAATAATAATTAAGTTACACTTAATCTCATGAGTCACACTCAAGTTTTTTTTTTAAAATATTATTATTATTATATATAGTTAGCTAATAAATTTTGATTATTGTGGATGTTCAAAAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT

mRNA sequence

ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT

Coding sequence (CDS)

ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAG

Protein sequence

MEEIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML
Homology
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match: A0A0A0K418 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.7e-50
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
           EIWTLCRIFKRNVSGRRYG+SG  NWNNKQ AA +TT IKNP ++ +KN  +   +    
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241

Query: 63  ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
                   +EKG   NNNNGEISYINF SC+ SMIIQTEKKPLLLD  NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301

Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           EWN+     NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match: A0A5A7UL49 (Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00310 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.6e-43
Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 0

Query: 5   WTLCRIFKRNVSGRRYGSSGN--WNNKQAAAAATTIKNP-MNVEKNSEI---------MM 64
           W +  IFKRNVSGRRYG+SG+  WNNKQ   AA +IKNP ++ +KN  +         +M
Sbjct: 150 WMMHEIFKRNVSGRRYGTSGSNTWNNKQ--LAAVSIKNPIIDDQKNIRMCNNKNIIDQVM 209

Query: 65  GSGAGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNN----NNHY 124
                +EKG   NNNNGEISYINF SCE SMIIQTEKKPLLLD  NYLN+NN    ++H+
Sbjct: 210 VPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHH 269

Query: 125 QEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           QEWN+     NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 270 QEWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 322

BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match: A0A6J1D1B7 (transcription factor JUNGBRUNNEN 1-like OS=Momordica charantia OX=3673 GN=LOC111016702 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 100/172 (58.14%), Postives = 110/172 (63.95%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIK-NPMNVEKNSEIMMG-SGAGAEK 62
           EIWTLCRIFKRNVS RRYGSS  WN +   +  TT K NPM    N+ I     GA  + 
Sbjct: 176 EIWTLCRIFKRNVSCRRYGSS--WNKQTTTSTTTTTKTNPMMSSANNNICNNLVGADHDH 235

Query: 63  GNNNNGEISYINFSCESMII---QTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNY 122
            +  +GEISYINFSCESMII   Q EKKP +L QNY N        EWNSN NNN  +  
Sbjct: 236 DHQKSGEISYINFSCESMIIHNQQVEKKPPIL-QNYPN--------EWNSNYNNNYYHQA 295

Query: 123 DQYSSC-------SSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           +  S C       SSSGIISPP+   TNQL DVNDFFTNSNWDELRSMV ML
Sbjct: 296 NISSCCSVAPSPVSSSGIISPPV---TNQL-DVNDFFTNSNWDELRSMVGML 332

BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match: A0A6J1GLV8 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111455439 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.6e-30
Identity = 92/166 (55.42%), Postives = 98/166 (59.04%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
           EIWTLCRIFKRNVS RRYG               T KN M+ EKN+  M           
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKMC---------- 230

Query: 63  NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
             N +   +N SCESMIIQTEKKP L   NY NH      QEW         NNYDQYSS
Sbjct: 231 --NNDPMIVNLSCESMIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290

Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
            S      SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match: A0A6J1HZZ9 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468456 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 91/166 (54.82%), Postives = 97/166 (58.43%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
           EIWTLCRIFKRNVS RRYG               T KN M+ EKN+  M           
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKMC---------- 230

Query: 63  NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
             N +   +NFS ES IIQTEKKP L   NY NH      QEW         NNYDQYSS
Sbjct: 231 --NNDPMIVNFSWESTIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290

Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
            S      SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

BLAST of Lsi11G016200 vs. NCBI nr
Match: XP_038888171.1 (putative NAC domain-containing protein 94 [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 137/176 (77.84%), Postives = 145/176 (82.39%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGS------GA 62
           EIWTLCRIFKRNVSGRRYG +GNWNNKQAAAAAT IKNPM  EKNS + M +      G+
Sbjct: 173 EIWTLCRIFKRNVSGRRYG-TGNWNNKQAAAAATVIKNPM-TEKNSTLRMCNNDEIMVGS 232

Query: 63  GAEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNN---HYQEWNSNSNNNN 122
            AE+G NN+GEISYINFSCESMIIQTEKKPLLLD NYLN+NNNN   H+QEWNS    NN
Sbjct: 233 AAERG-NNHGEISYINFSCESMIIQTEKKPLLLDPNYLNNNNNNNHHHHQEWNS----NN 292

Query: 123 NNNYDQYSSCS-------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           NNNYDQYSSCS       SSGIISPPI YPTNQLVDVNDFFTNSNWDELRSMVDML
Sbjct: 293 NNNYDQYSSCSSMDPSPVSSGIISPPIPYPTNQLVDVNDFFTNSNWDELRSMVDML 341

BLAST of Lsi11G016200 vs. NCBI nr
Match: KAE8646102.1 (hypothetical protein Csa_016723 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
           EIWTLCRIFKRNVSGRRYG+SG  NWNNKQ AA +TT IKNP ++ +KN  +   +    
Sbjct: 105 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 164

Query: 63  ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
                   +EKG   NNNNGEISYINF SC+ SMIIQTEKKPLLLD  NYLN+N+++H+Q
Sbjct: 165 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 224

Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           EWN+     NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 225 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 278

BLAST of Lsi11G016200 vs. NCBI nr
Match: XP_004139890.2 (transcription factor JUNGBRUNNEN 1 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
           EIWTLCRIFKRNVSGRRYG+SG  NWNNKQ AA +TT IKNP ++ +KN  +   +    
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241

Query: 63  ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
                   +EKG   NNNNGEISYINF SC+ SMIIQTEKKPLLLD  NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301

Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           EWN+     NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355

BLAST of Lsi11G016200 vs. NCBI nr
Match: KAA0056532.1 (transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 9.5e-43
Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 0

Query: 5   WTLCRIFKRNVSGRRYGSSGN--WNNKQAAAAATTIKNP-MNVEKNSEI---------MM 64
           W +  IFKRNVSGRRYG+SG+  WNNKQ   AA +IKNP ++ +KN  +         +M
Sbjct: 150 WMMHEIFKRNVSGRRYGTSGSNTWNNKQ--LAAVSIKNPIIDDQKNIRMCNNKNIIDQVM 209

Query: 65  GSGAGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNN----NNHY 124
                +EKG   NNNNGEISYINF SCE SMIIQTEKKPLLLD  NYLN+NN    ++H+
Sbjct: 210 VPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHH 269

Query: 125 QEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
           QEWN+     NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 270 QEWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 322

BLAST of Lsi11G016200 vs. NCBI nr
Match: XP_023553947.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 93/166 (56.02%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 3   EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
           EIWTLCRIFKRNVS RRYG               T KN M+ EKN+  M           
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKM----------- 230

Query: 63  NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
            +N +   +NFSCESMIIQTEKKP L   NY NH      QEW         NNYDQYSS
Sbjct: 231 -SNNDPMIVNFSCESMIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290

Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
            S      SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4188.7e-5068.16NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV... [more]
A0A5A7UL494.6e-4364.44Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A6J1D1B72.0e-3058.14transcription factor JUNGBRUNNEN 1-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1GLV87.6e-3055.42transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1HZZ91.4e-2854.82transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468... [more]
Match NameE-valueIdentityDescription
XP_038888171.18.6e-6077.84putative NAC domain-containing protein 94 [Benincasa hispida][more]
KAE8646102.11.8e-4968.16hypothetical protein Csa_016723 [Cucumis sativus][more]
XP_004139890.21.8e-4968.16transcription factor JUNGBRUNNEN 1 [Cucumis sativus][more]
KAA0056532.19.5e-4364.44transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa][more]
XP_023553947.12.4e-3056.02transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G016200.1Lsi11G016200.1mRNA