Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAAGGAAATGAATGCATTGGTCTTAAGAAAACACTTGTTTATTATCGTGGATCTGCTGGAAAAGGCTCTAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTCCAGCTTCCAATAACAATCCAAACCATCTCCAACAACCCAATTCCAAGAACTTTGCTCAAGAAGCGGTAAGCCTAAATTTATCCTAATATTCCATCATCAATCATTTAGTGAAAATAGAAAAAAAAAATGTCAAACTATTTATAAAAAATAGCAAAAAAAAAAAAAAAAACACTAATAGACATTGATAGACTTCTATTAGCATCCATCAATAATAGACTTTTATTATTTCTATCACCGATAGTCCCTGATAGACTTATATCAATGTCTATCGCAACTATCTACAAATTTTGCTATTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTATAAACTTCCCATAATTCTTTAGAAAATTTTTAAAAATAAAACAATAAGGGAAACTATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGACGCTGAAAGAAGTTTATTAGGATCTATCCATTATAGAAATGATAGAAATCTATCGCTGATAGATGCTAATAGAAGTCTATCAATATCTATCGGTATTTTTTTTTTTTTTTTCTGTTAATAGTTTGACATTTTTTCTATCTATGAAAATTTTCCTTTTTTTCTTTTTGCAATAATAATTAAGTTACACTTAATCTCATGAGTCACACTCAAGTTTTTTTTTTAAAATATTATTATTATTATATATAGTTAGCTAATAAATTTTGATTATTGTGGATGTTCAAAAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT
mRNA sequence
ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAGATCCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAAATCCATCACATAATTCTCT
Coding sequence (CDS)
ATGGAGGAAATTTGGACATTGTGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGATCATCAGGAAATTGGAATAACAAGCAGGCGGCGGCAGCAGCAACAACAATCAAAAACCCTATGAATGTAGAAAAGAACAGTGAAATTATGATGGGATCAGGAGCTGGTGCTGAAAAAGGTAATAATAATAATGGAGAAATTAGTTACATCAACTTCAGCTGTGAATCCATGATTATCCAGACAGAGAAGAAGCCATTACTTCTTGATCAAAATTACCTCAACCACAATAATAATAATCATTATCAAGAATGGAATAGCAATAGCAATAATAATAATAATAATAACTATGATCAATATAGCAGCTGTTCTTCAAGTGGTATTATTTCACCTCCAATTGCTTACCCAACAAATCAGCTTGTTGATGTCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTGAGATCAATGGTGGACATGTTGTAG
Protein sequence
MEEIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML
Homology
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match:
A0A0A0K418 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 8.7e-50
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
EIWTLCRIFKRNVSGRRYG+SG NWNNKQ AA +TT IKNP ++ +KN + +
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241
Query: 63 ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
+EKG NNNNGEISYINF SC+ SMIIQTEKKPLLLD NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301
Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
EWN+ NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match:
A0A5A7UL49 (Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00310 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 4.6e-43
Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 0
Query: 5 WTLCRIFKRNVSGRRYGSSGN--WNNKQAAAAATTIKNP-MNVEKNSEI---------MM 64
W + IFKRNVSGRRYG+SG+ WNNKQ AA +IKNP ++ +KN + +M
Sbjct: 150 WMMHEIFKRNVSGRRYGTSGSNTWNNKQ--LAAVSIKNPIIDDQKNIRMCNNKNIIDQVM 209
Query: 65 GSGAGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNN----NNHY 124
+EKG NNNNGEISYINF SCE SMIIQTEKKPLLLD NYLN+NN ++H+
Sbjct: 210 VPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHH 269
Query: 125 QEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
QEWN+ NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 270 QEWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 322
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match:
A0A6J1D1B7 (transcription factor JUNGBRUNNEN 1-like OS=Momordica charantia OX=3673 GN=LOC111016702 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 100/172 (58.14%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIK-NPMNVEKNSEIMMG-SGAGAEK 62
EIWTLCRIFKRNVS RRYGSS WN + + TT K NPM N+ I GA +
Sbjct: 176 EIWTLCRIFKRNVSCRRYGSS--WNKQTTTSTTTTTKTNPMMSSANNNICNNLVGADHDH 235
Query: 63 GNNNNGEISYINFSCESMII---QTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNY 122
+ +GEISYINFSCESMII Q EKKP +L QNY N EWNSN NNN +
Sbjct: 236 DHQKSGEISYINFSCESMIIHNQQVEKKPPIL-QNYPN--------EWNSNYNNNYYHQA 295
Query: 123 DQYSSC-------SSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
+ S C SSSGIISPP+ TNQL DVNDFFTNSNWDELRSMV ML
Sbjct: 296 NISSCCSVAPSPVSSSGIISPPV---TNQL-DVNDFFTNSNWDELRSMVGML 332
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match:
A0A6J1GLV8 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111455439 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 7.6e-30
Identity = 92/166 (55.42%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
EIWTLCRIFKRNVS RRYG T KN M+ EKN+ M
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKMC---------- 230
Query: 63 NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
N + +N SCESMIIQTEKKP L NY NH QEW NNYDQYSS
Sbjct: 231 --NNDPMIVNLSCESMIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290
Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
S SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291
BLAST of Lsi11G016200 vs. ExPASy TrEMBL
Match:
A0A6J1HZZ9 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468456 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 91/166 (54.82%), Postives = 97/166 (58.43%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
EIWTLCRIFKRNVS RRYG T KN M+ EKN+ M
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKMC---------- 230
Query: 63 NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
N + +NFS ES IIQTEKKP L NY NH QEW NNYDQYSS
Sbjct: 231 --NNDPMIVNFSWESTIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290
Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
S SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291
BLAST of Lsi11G016200 vs. NCBI nr
Match:
XP_038888171.1 (putative NAC domain-containing protein 94 [Benincasa hispida])
HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 137/176 (77.84%), Postives = 145/176 (82.39%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGS------GA 62
EIWTLCRIFKRNVSGRRYG +GNWNNKQAAAAAT IKNPM EKNS + M + G+
Sbjct: 173 EIWTLCRIFKRNVSGRRYG-TGNWNNKQAAAAATVIKNPM-TEKNSTLRMCNNDEIMVGS 232
Query: 63 GAEKGNNNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNN---HYQEWNSNSNNNN 122
AE+G NN+GEISYINFSCESMIIQTEKKPLLLD NYLN+NNNN H+QEWNS NN
Sbjct: 233 AAERG-NNHGEISYINFSCESMIIQTEKKPLLLDPNYLNNNNNNNHHHHQEWNS----NN 292
Query: 123 NNNYDQYSSCS-------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
NNNYDQYSSCS SSGIISPPI YPTNQLVDVNDFFTNSNWDELRSMVDML
Sbjct: 293 NNNYDQYSSCSSMDPSPVSSGIISPPIPYPTNQLVDVNDFFTNSNWDELRSMVDML 341
BLAST of Lsi11G016200 vs. NCBI nr
Match:
KAE8646102.1 (hypothetical protein Csa_016723 [Cucumis sativus])
HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
EIWTLCRIFKRNVSGRRYG+SG NWNNKQ AA +TT IKNP ++ +KN + +
Sbjct: 105 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 164
Query: 63 ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
+EKG NNNNGEISYINF SC+ SMIIQTEKKPLLLD NYLN+N+++H+Q
Sbjct: 165 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 224
Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
EWN+ NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 225 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 278
BLAST of Lsi11G016200 vs. NCBI nr
Match:
XP_004139890.2 (transcription factor JUNGBRUNNEN 1 [Cucumis sativus])
HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 122/179 (68.16%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSG--NWNNKQAAAAATT-IKNP-MNVEKNSEIMMGSG--- 62
EIWTLCRIFKRNVSGRRYG+SG NWNNKQ AA +TT IKNP ++ +KN + +
Sbjct: 182 EIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVD 241
Query: 63 ------AGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNNNNHYQ 122
+EKG NNNNGEISYINF SC+ SMIIQTEKKPLLLD NYLN+N+++H+Q
Sbjct: 242 QIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQ 301
Query: 123 EWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
EWN+ NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 302 EWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 355
BLAST of Lsi11G016200 vs. NCBI nr
Match:
KAA0056532.1 (transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 184.1 bits (466), Expect = 9.5e-43
Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 0
Query: 5 WTLCRIFKRNVSGRRYGSSGN--WNNKQAAAAATTIKNP-MNVEKNSEI---------MM 64
W + IFKRNVSGRRYG+SG+ WNNKQ AA +IKNP ++ +KN + +M
Sbjct: 150 WMMHEIFKRNVSGRRYGTSGSNTWNNKQ--LAAVSIKNPIIDDQKNIRMCNNKNIIDQVM 209
Query: 65 GSGAGAEKG---NNNNGEISYINF-SCE-SMIIQTEKKPLLLD-QNYLNHNN----NNHY 124
+EKG NNNNGEISYINF SCE SMIIQTEKKPLLLD NYLN+NN ++H+
Sbjct: 210 VPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHH 269
Query: 125 QEWNSNSNNNNNNNYDQYSSCSSSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
QEWN+ NNN+YDQYSSCSSSGIISP I YPTNQ +D+NDFFTNSNWDELRSMVDML
Sbjct: 270 QEWNT-----NNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 322
BLAST of Lsi11G016200 vs. NCBI nr
Match:
XP_023553947.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 93/166 (56.02%), Postives = 100/166 (60.24%), Query Frame = 0
Query: 3 EIWTLCRIFKRNVSGRRYGSSGNWNNKQAAAAATTIKNPMNVEKNSEIMMGSGAGAEKGN 62
EIWTLCRIFKRNVS RRYG T KN M+ EKN+ M
Sbjct: 171 EIWTLCRIFKRNVSCRRYG---------------TTKNSMS-EKNTLKM----------- 230
Query: 63 NNNGEISYINFSCESMIIQTEKKPLLLDQNYLNHNNNNHYQEWNSNSNNNNNNNYDQYSS 122
+N + +NFSCESMIIQTEKKP L NY NH QEW NNYDQYSS
Sbjct: 231 -SNNDPMIVNFSCESMIIQTEKKPFL--PNYPNH------QEW---------NNYDQYSS 290
Query: 123 CS------SSGIISPPIAYPTNQLVDVNDFFTNSNWDELRSMVDML 163
S SSGIISPPI YPTNQ +DVNDFFTNSNWDELRS+VDML
Sbjct: 291 TSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K418 | 8.7e-50 | 68.16 | NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV... | [more] |
A0A5A7UL49 | 4.6e-43 | 64.44 | Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A6J1D1B7 | 2.0e-30 | 58.14 | transcription factor JUNGBRUNNEN 1-like OS=Momordica charantia OX=3673 GN=LOC111... | [more] |
A0A6J1GLV8 | 7.6e-30 | 55.42 | transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
A0A6J1HZZ9 | 1.4e-28 | 54.82 | transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468... | [more] |
Match Name | E-value | Identity | Description | |
XP_038888171.1 | 8.6e-60 | 77.84 | putative NAC domain-containing protein 94 [Benincasa hispida] | [more] |
KAE8646102.1 | 1.8e-49 | 68.16 | hypothetical protein Csa_016723 [Cucumis sativus] | [more] |
XP_004139890.2 | 1.8e-49 | 68.16 | transcription factor JUNGBRUNNEN 1 [Cucumis sativus] | [more] |
KAA0056532.1 | 9.5e-43 | 64.44 | transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa] | [more] |
XP_023553947.1 | 2.4e-30 | 56.02 | transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |