Lsi11G015790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G015790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GYF domain-containing protein
Location	chr11: 24119951 .. 24122364 (-)
RNA-Seq Expression	Lsi11G015790
Synteny	Lsi11G015790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGGTTCAGTCATTCCTAGTTTCAATTTGCTGCCTCCCTCTCCATGAGTTTATTTCAACCCATTTTTTCACAAATTCTGGGTTATGCAACAATAAATTTTCATATGGGTTCATGGGTTGCTTTGATACTCCAACTTTGGCTAAAATGATTGAGCAAAATCTTGGTGGGTGGCGTGCATACAATTCTCAACAACCAAAGAAAATTTTTTATGACAGCCATGCTCTACAGTTCTTAGATTTTTTATGGGCACCTTCAATTTTTGTAGTTCCAGTTGCAATGCAAGATTTCCACAAGCCAACGATTTTATTTGGGATTTTTACAAATCATTGAAGTAAAAAAAACTTTGTATTCTTCATTTTCCTTTTGAAACTCGAAGATGAGTTTTTTTTTTTTTTAGGGATAGAATGATGTAGTAGGATTAGGGTAAATTAGGGTATCTTGTTCAAATCCTTAATTGATTTGGTTTAGGATTAGTTTCATTGATTGGTTAGGATTAGGATTAGTTTCCTTGGTTTATTAAGATTAGGATTAGTTTCTTTGTTAATTAGGATTAGAATTAGTTTGCTTTCCAATTCTCTATAAATAGAGGGATTGTGTTCTTGTTTTGATAACTTTTAATTTATAATAAAGACTTCGATTTTATTATTGGAATAGGCTAAAGATCTTTAAGAGGAGTGATTGGTGAATGGAATGATCTTTGGGAGTTCAGTACAATGATCTATTATTCTTAGAACCTGTAATTTGGAATTTTCATCGAGATGACTTTGGGGCTCTTTTTTCTTTTTTTTCTTTTTTTTTTGCCCCTTCTTTTGGTGTTGGCATATCATCATCATCCCATATTATGTGTATCATTAGACTGGTATACTGTAATAAATACCACACAGTAGCTTTTGATCTTTGCAACACTTGGAAGTAAGATTGCATAAAAGGCTGAAACAGTACAAATGTGCCTTAACTGACTTGATGTACGCTTGATCAATATCTGGAGAAAAAGCAGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGGTTTGTCTGTCTTTAGGTTAATCTAATCGTATTGTACATACTATTTGTAGTTTCTCTCAAGTCCTTATAAATAGTTAAGTTACTTTGTATCTTTCCCATTGTTTTAAAAAAATGAATTTCAAGACCAAAGTTTTTTTACTGATCAACTCTGGGCTTTTGGGTTACAGAAAATTTCATTAGAGATCCTAAGGCCAAATGGTTCATTAGCAGAACACGAGCTATATGGCATGTGAACTGATTCCTTTCTTTTATGATATTATTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

mRNA sequence

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

Coding sequence (CDS)

ATGACCGAAGATAAAGGTGAATCAAACGTATTGTTAAGGAAAGTTACAGGAGTCAAGGAGGGGGAAGAATCAATTGACAAAACCTTTTGTGTTATTGCATATAACGAAGAGGATGAAAACATGTTCGTAGGGAAAAGTTGTGTGACTATTTTCAACCCATTACTTCCACCACATGAATCAAAGGTTTTAAGGTTCCCACATAAATTCACCAACGTTACAGAGGAGGAAGAACAGAATGAAGAAACATGTGTTGTTGCGTGCAAAGACAAAGAAGTCAAGAAAGAAGATGTGATAATAAACGGAGGTAATTTTGACAAAGAAGACGACAACCATGGGCAAATCGATTTGAAGAAGTTTGAATCTTTGGTTGCAGCCGATTACTTGGAAGACAACGAGGAAGAATACATGGAAACACATGATCCATTCAAACCGACCCAAACGATCCGACCCAACATGTGTGTTCAATTCCTAGCATGTGTTTCGTGCAATCCGACCTGGCTCCTTCAGACTGCAGAAGAACAGTCGCGTATATTGCGTGAGATTCCACCAGTGATTGCAGATGAAACAGAAATTAAAGGCATTTATGCTGGTGCAAATCAAGGAGATAATGTCACTAATGAAGGAGATGAAACAAAATTGCTGGTGATGAGGGAGGTTTTAGATGATACAAATCAAGGAGAAACTGTATTTAGTTCAAACCCAAATGTCGATATTTATGTTGCAGAAAACCCAACTACAGCTTTGATGTCCAACGTGAAAGAATTTGCAGAATTTAGACAGACTGTTCTTGATGAAGAACAGCCCCAACAACCAGGAGAATCTACGTATAATAGCTTTAAAGAGACAGAACCTATAAATGTTATGGATAAAGGCTGTCAAGCGTATGAGCAGATTAAAGAATCTAGAGTGATAAATTTGAGCGATGATGATGAACCACCAGGGGTTGAAGAGCATGATTGGAATAACAAACTAAGAAGCTTGATTTGGCATTATTTAGATCCTCAGGGGGACATTCAAGGGCCCTTTTGTCTTGCGTCATTGAAAAACTGGAAGGATGCTAACTATTTTCCTTCAGATTTCAAGGTCTGGAAGACGGGTCAGAGTCAAGATCAAGCTGTTTTATTGAGCGACATTCTTTCCCCCTTCTTTTCATAA

Protein sequence

MTEDKGESNVLLRKVTGVKEGEESIDKTFCVIAYNEEDENMFVGKSCVTIFNPLLPPHESKVLRFPHKFTNVTEEEEQNEETCVVACKDKEVKKEDVIINGGNFDKEDDNHGQIDLKKFESLVAADYLEDNEEEYMETHDPFKPTQTIRPNMCVQFLACVSCNPTWLLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQGETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS

Homology

[Close]

BLAST of Lsi11G015790 vs. ExPASy Swiss-Prot
Match: Q9FT92 (Uncharacterized protein At5g08430 OS=Arabidopsis thaliana OX=3702 GN=At5g08430 PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-21
Identity = 83/247 (33.60%), Postives = 113/247 (45.75%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEG--DETKLLVMREVLDDTN 226
           LLQ  +EQ+R+LRE+P VI +E  ++     + +     NE    E+ L  + E  +  N
Sbjct: 311 LLQNPDEQARLLREVPEVIGEEL-VQNPEVSSPEAHKSDNEQRLSESPLSCIHETPEARN 370

Query: 227 --QGETVFSSNPNVDIYVAENP--TTALMSNVKEFAEFRQTVL----------DEEQPQQ 286
              GE    +N     YV  NP  T  + S   E  +   T +          D EQP  
Sbjct: 371 LFGGEDQQFNNG----YVMSNPITTPGITSCATEINKGLPTWIASAGAEYLHVDVEQPAN 430

Query: 287 --------PGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNN 346
                     ES  +  + + P+N +D G Q   Q   S VI LSDDDE    +    + 
Sbjct: 431 GIIGGETPTEESKVSQLQSSIPVNNVDNGSQV--QPNPSEVIELSDDDEDDNGDGETLDP 490

Query: 347 KL----------RSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQA 380
           K+            L W Y DPQG +QGPF L  LK W DA YF   F+VW TG+S + A
Sbjct: 491 KVEDVRVLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESA 550

[Close]

BLAST of Lsi11G015790 vs. ExPASy Swiss-Prot
Match: Q9SD34 (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=At3g51120 PE=2 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-11
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 301 SRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDF 360
           S+V N S + +  G ++ +      S IWHY DP G  QGPF +  L+ WK + +FP   
Sbjct: 697 SKVHNNSSNIQETGKDDEE------SEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYL 756

Query: 361 KVWKTGQSQDQAVLLSDILSPFF 384
           ++W+  ++QD++VLL+D L+  F
Sbjct: 757 RIWRAHENQDESVLLTDALAGRF 773

[Close]

BLAST of Lsi11G015790 vs. ExPASy Swiss-Prot
Match: Q9SIV5 (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=NERD PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-11
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 328  IWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
            IWHY DP G +QGPF +A L+ W +  YFP+  ++WK  +S   +VLL+D L+  F
Sbjct: 1309 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLF 1364

[Close]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL
Match: A0A6J1HZR7 (uncharacterized protein At5g08430 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468398 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQTAEEQSRI REIP VIADE E +GIY  ANQGDNVTNEGDETKL V REV DDTNQG
Sbjct: 327 LLQTAEEQSRIFREIPQVIADEPEFQGIYGSANQGDNVTNEGDETKLQVRREVSDDTNQG 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYN-SFKETEPI 286
           ETVF SNPNVDIYVAEN T A MSNV+EFAE R++VLDEEQP QP ESTYN S  ETE I
Sbjct: 387 ETVFGSNPNVDIYVAENRTAASMSNVEEFAECRRSVLDEEQPPQPVESTYNSSLNETELI 446

Query: 287 NVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLA 346
           N +DKG  A EQIKESRVINLSDDDE P  EE DWN+ LRSLIW+YLDPQGD+QGPFCLA
Sbjct: 447 NEVDKGWLANEQIKESRVINLSDDDELPRGEELDWNSTLRSLIWYYLDPQGDVQGPFCLA 506

Query: 347 SLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPF 383
           SLKNWKDA+YFP DFKVWK GQ+QDQAVLLSDILS F
Sbjct: 507 SLKNWKDADYFPPDFKVWKMGQTQDQAVLLSDILSHF 543

[Close]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL
Match: A0A6J1HXL9 (uncharacterized protein At5g08430 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468398 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQTAEEQSRI REIP VIADE E +GIY  ANQGDNVTNEGDETKL V REV DDTNQG
Sbjct: 224 LLQTAEEQSRIFREIPQVIADEPEFQGIYGSANQGDNVTNEGDETKLQVRREVSDDTNQG 283

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYN-SFKETEPI 286
           ETVF SNPNVDIYVAEN T A MSNV+EFAE R++VLDEEQP QP ESTYN S  ETE I
Sbjct: 284 ETVFGSNPNVDIYVAENRTAASMSNVEEFAECRRSVLDEEQPPQPVESTYNSSLNETELI 343

Query: 287 NVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLA 346
           N +DKG  A EQIKESRVINLSDDDE P  EE DWN+ LRSLIW+YLDPQGD+QGPFCLA
Sbjct: 344 NEVDKGWLANEQIKESRVINLSDDDELPRGEELDWNSTLRSLIWYYLDPQGDVQGPFCLA 403

Query: 347 SLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPF 383
           SLKNWKDA+YFP DFKVWK GQ+QDQAVLLSDILS F
Sbjct: 404 SLKNWKDADYFPPDFKVWKMGQTQDQAVLLSDILSHF 440

[Close]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL
Match: A0A0A0K932 (GYF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G252680 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 9.1e-90
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 33  LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 92

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LD EQ  QP E TYN F E+EPIN
Sbjct: 93  ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLD-EQAAQPVECTYNYFIESEPIN 152

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 153 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 212

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 213 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 249

[Close]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL
Match: A0A5D3BEU2 (GYF domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00050 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 170/223 (76.23%), Postives = 184/223 (82.51%), Query Frame = 0


Query: 162 CNPTWLLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLD 221
           C    LLQ+A EQSRILREIP VIADETE  GIYA A+Q DNVT EGD+ KLLV REV D
Sbjct: 2   CITGLLLQSAAEQSRILREIPQVIADETEFGGIYASADQADNVTKEGDDRKLLVTREVSD 61

Query: 222 DTNQGETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKE 281
           D  QGETVFSSN  VD Y AENPTTALM N+ E AE RQ  LDE+ P QP E T ++ KE
Sbjct: 62  DRKQGETVFSSNSTVDTYGAENPTTALMFNLNENAESRQVFLDEQSP-QPVECTCDNVKE 121

Query: 282 TEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGP 341
           TEPIN +DKG Q  EQIKES VI+LSDDDEPP  EEHDWNN+L+SLIWHYLDPQGD+QGP
Sbjct: 122 TEPINAVDKGRQENEQIKESTVIDLSDDDEPPRTEEHDWNNRLKSLIWHYLDPQGDVQGP 181

Query: 342 FCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           FCLASLKNWKDANYFPSDFKVWKTGQ+QDQAVLL+DILSPFFS
Sbjct: 182 FCLASLKNWKDANYFPSDFKVWKTGQTQDQAVLLNDILSPFFS 223

[Close]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL
Match: A0A5A7V6F1 (Binding protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00520 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 5.9e-89
Identity = 169/218 (77.52%), Postives = 183/218 (83.94%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GIYA A+Q DNVT EGD+ KLLV REV DD  QG
Sbjct: 324 LLQSAAEQSRILREIPQVIADETEFGGIYASADQADNVTKEGDDRKLLVTREVSDDRKQG 383

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN  VD Y AENPTTALM N+ E AE RQ  LDE+ P QP E T ++ KETEPIN
Sbjct: 384 ETVFSSNSTVDTYGAENPTTALMFNLNENAESRQVFLDEQSP-QPVECTCDNVKETEPIN 443

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKG Q  EQIKES VI+LSDDDEPP  EEHDWNN+L+SLIWHYLDPQGD+QGPFCLAS
Sbjct: 444 AVDKGRQENEQIKESTVIDLSDDDEPPRTEEHDWNNRLKSLIWHYLDPQGDVQGPFCLAS 503

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVWKTGQ+QDQAVLL+DILSPFFS
Sbjct: 504 LKNWKDANYFPSDFKVWKTGQTQDQAVLLNDILSPFFS 540

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: XP_022969376.1 (uncharacterized protein At5g08430 isoform X2 [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 8.4e-90
Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQTAEEQSRI REIP VIADE E +GIY  ANQGDNVTNEGDETKL V REV DDTNQG
Sbjct: 224 LLQTAEEQSRIFREIPQVIADEPEFQGIYGSANQGDNVTNEGDETKLQVRREVSDDTNQG 283

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYN-SFKETEPI 286
           ETVF SNPNVDIYVAEN T A MSNV+EFAE R++VLDEEQP QP ESTYN S  ETE I
Sbjct: 284 ETVFGSNPNVDIYVAENRTAASMSNVEEFAECRRSVLDEEQPPQPVESTYNSSLNETELI 343

Query: 287 NVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLA 346
           N +DKG  A EQIKESRVINLSDDDE P  EE DWN+ LRSLIW+YLDPQGD+QGPFCLA
Sbjct: 344 NEVDKGWLANEQIKESRVINLSDDDELPRGEELDWNSTLRSLIWYYLDPQGDVQGPFCLA 403

Query: 347 SLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPF 383
           SLKNWKDA+YFP DFKVWK GQ+QDQAVLLSDILS F
Sbjct: 404 SLKNWKDADYFPPDFKVWKMGQTQDQAVLLSDILSHF 440

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: XP_022969375.1 (uncharacterized protein At5g08430 isoform X1 [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 8.4e-90
Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQTAEEQSRI REIP VIADE E +GIY  ANQGDNVTNEGDETKL V REV DDTNQG
Sbjct: 327 LLQTAEEQSRIFREIPQVIADEPEFQGIYGSANQGDNVTNEGDETKLQVRREVSDDTNQG 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYN-SFKETEPI 286
           ETVF SNPNVDIYVAEN T A MSNV+EFAE R++VLDEEQP QP ESTYN S  ETE I
Sbjct: 387 ETVFGSNPNVDIYVAENRTAASMSNVEEFAECRRSVLDEEQPPQPVESTYNSSLNETELI 446

Query: 287 NVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLA 346
           N +DKG  A EQIKESRVINLSDDDE P  EE DWN+ LRSLIW+YLDPQGD+QGPFCLA
Sbjct: 447 NEVDKGWLANEQIKESRVINLSDDDELPRGEELDWNSTLRSLIWYYLDPQGDVQGPFCLA 506

Query: 347 SLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPF 383
           SLKNWKDA+YFP DFKVWK GQ+QDQAVLLSDILS F
Sbjct: 507 SLKNWKDADYFPPDFKVWKMGQTQDQAVLLSDILSHF 543

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: XP_011659061.1 (uncharacterized protein At5g08430 isoform X5 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.9e-89
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 307 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 366

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LD EQ  QP E TYN F E+EPIN
Sbjct: 367 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLD-EQAAQPVECTYNYFIESEPIN 426

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 427 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 486

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 487 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 523

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: XP_031744705.1 (uncharacterized protein At5g08430 isoform X3 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.9e-89
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 363 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 422

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LD EQ  QP E TYN F E+EPIN
Sbjct: 423 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLD-EQAAQPVECTYNYFIESEPIN 482

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 483 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 542

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 543 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 579

[Close]

BLAST of Lsi11G015790 vs. NCBI nr
Match: XP_004148294.1 (uncharacterized protein At5g08430 isoform X4 [Cucumis sativus] >KAE8646125.1 hypothetical protein Csa_016053 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 1.9e-89
Identity = 170/218 (77.98%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEGDETKLLVMREVLDDTNQG 226
           LLQ+A EQSRILREIP VIADETE  GI+A A+Q DNVT EGDETKLL +RE  DD  QG
Sbjct: 327 LLQSAAEQSRILREIPQVIADETEFGGIHASADQADNVTKEGDETKLLDIREASDDRKQG 386

Query: 227 ETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQQPGESTYNSFKETEPIN 286
           ETVFSSN NVD Y AENPTTALM N+ E  E RQ  LD EQ  QP E TYN F E+EPIN
Sbjct: 387 ETVFSSNSNVDTYGAENPTTALMFNLNENTESRQIFLD-EQAAQPVECTYNYFIESEPIN 446

Query: 287 VMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLAS 346
            +DKGCQA EQIKES VI+LSDDDEPP  EEHDWNNKL+SLIW+YLDPQGD+QGPFCLAS
Sbjct: 447 AVDKGCQANEQIKESTVIDLSDDDEPPRAEEHDWNNKLKSLIWYYLDPQGDVQGPFCLAS 506

Query: 347 LKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFFS 385
           LKNWKDANYFPSDFKVW+TGQ+QDQAVLL+DILSPFFS
Sbjct: 507 LKNWKDANYFPSDFKVWRTGQTQDQAVLLNDILSPFFS 543

[Close]

BLAST of Lsi11G015790 vs. TAIR 10
Match: AT5G08430.1 (SWIB/MDM2 domain;Plus-3;GYF )

HSP 1 Score: 102.8 bits (255), Expect = 6.2e-22
Identity = 83/247 (33.60%), Postives = 113/247 (45.75%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGIYAGANQGDNVTNEG--DETKLLVMREVLDDTN 226
           LLQ  +EQ+R+LRE+P VI +E  ++     + +     NE    E+ L  + E  +  N
Sbjct: 311 LLQNPDEQARLLREVPEVIGEEL-VQNPEVSSPEAHKSDNEQRLSESPLSCIHETPEARN 370

Query: 227 --QGETVFSSNPNVDIYVAENP--TTALMSNVKEFAEFRQTVL----------DEEQPQQ 286
              GE    +N     YV  NP  T  + S   E  +   T +          D EQP  
Sbjct: 371 LFGGEDQQFNNG----YVMSNPITTPGITSCATEINKGLPTWIASAGAEYLHVDVEQPAN 430

Query: 287 --------PGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNN 346
                     ES  +  + + P+N +D G Q   Q   S VI LSDDDE    +    + 
Sbjct: 431 GIIGGETPTEESKVSQLQSSIPVNNVDNGSQV--QPNPSEVIELSDDDEDDNGDGETLDP 490

Query: 347 KL----------RSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQA 380
           K+            L W Y DPQG +QGPF L  LK W DA YF   F+VW TG+S + A
Sbjct: 491 KVEDVRVLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESA 550

[Close]

BLAST of Lsi11G015790 vs. TAIR 10
Match: AT5G23480.1 (SWIB/MDM2 domain;Plus-3;GYF )

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-14
Identity = 64/239 (26.78%), Postives = 99/239 (41.42%), Query Frame = 0


Query: 167 LLQTAEEQSRILREIPPVIADETEIKGI-----------------YAGANQGDNVTNEGD 226
           LL+  EEQ R+L ++P V+A++ E + +                 +  A+Q D      D
Sbjct: 350 LLKNPEEQLRLLCDVPDVVAEKLEPEFVDDDGKLVNDATVPNPEAFTEAHQSDEEIQPSD 409

Query: 227 ETKLLVMREVLDDTNQGETVFSSNPNVDIYVAENPTTALMSNVKEFAEFRQTVLDEEQPQ 286
                + + + D      +  + + + D+Y  E P   +  N     E            
Sbjct: 410 LPDSSIQKTLEDQPIWTASAGNKDLHEDVY--EPPANGITLNTDSITE------------ 469

Query: 287 QPGESTYNSFKETEPINVMDKGCQAYEQIKESRVINLSDDDEPPGVEEHDWNNKL----- 346
             GE      +      V+D   +         +I LSDDD+    +E D N++      
Sbjct: 470 --GEMNTKVSQHQSSTPVIDLSNKTQAHSNPIEIIELSDDDDD---DEKDKNDQAYQSYD 529

Query: 347 -RSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPS--DFKVWKTGQSQDQAVLLSDILS 381
            + ++W Y  P+G   GPF L  LK W D  YF    DFKVWKTG+S   AVLL+ +LS
Sbjct: 530 PKKVMWFYEYPKGKTHGPFSLTDLKTWSDEEYFVGVPDFKVWKTGES---AVLLTKLLS 566

[Close]

BLAST of Lsi11G015790 vs. TAIR 10
Match: AT3G51120.1 (DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding )

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-12
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 301 SRVINLSDDDEPPGVEEHDWNNKLRSLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDF 360
           S+V N S + +  G ++ +      S IWHY DP G  QGPF +  L+ WK + +FP   
Sbjct: 697 SKVHNNSSNIQETGKDDEE------SEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYL 756

Query: 361 KVWKTGQSQDQAVLLSDILSPFF 384
           ++W+  ++QD++VLL+D L+  F
Sbjct: 757 RIWRAHENQDESVLLTDALAGRF 773

[Close]

BLAST of Lsi11G015790 vs. TAIR 10
Match: AT2G16485.1 (nucleic acid binding;zinc ion binding;DNA binding )

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-12
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 328  IWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
            IWHY DP G +QGPF +A L+ W +  YFP+  ++WK  +S   +VLL+D L+  F
Sbjct: 1309 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDALAGLF 1364

[Close]

BLAST of Lsi11G015790 vs. TAIR 10
Match: AT2G18090.1 (PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-10
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 326 SLIWHYLDPQGDIQGPFCLASLKNWKDANYFPSDFKVWKTGQSQDQAVLLSDILSPFF 384
           +++W Y DP G I GPF L +L+ W  + +FP + ++W+ G+ Q  ++LL+D L+  F
Sbjct: 456 NMVWLYGDPDGKIHGPFSLYNLRQWNSSGHFPPELRIWRLGEQQHSSILLTDALNGQF 513

The following BLAST results are available for this feature:

BLAST of Lsi11G015790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FT92	8.7e-21	33.60	Uncharacterized protein At5g08430 OS=Arabidopsis thaliana OX=3702 GN=At5g08430 P...	[more]
Q9SD34	2.1e-11	37.35	Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SIV5	2.8e-11	46.43	Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi11G015790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZR7	4.1e-90	80.65	uncharacterized protein At5g08430 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1HXL9	4.1e-90	80.65	uncharacterized protein At5g08430 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0K932	9.1e-90	77.98	GYF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G252680 PE=4 SV...	[more]
A0A5D3BEU2	4.5e-89	76.23	GYF domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6F1	5.9e-89	77.52	Binding protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Lsi11G015790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969376.1	8.4e-90	80.65	uncharacterized protein At5g08430 isoform X2 [Cucurbita maxima]	[more]
XP_022969375.1	8.4e-90	80.65	uncharacterized protein At5g08430 isoform X1 [Cucurbita maxima]	[more]
XP_011659061.1	1.9e-89	77.98	uncharacterized protein At5g08430 isoform X5 [Cucumis sativus]	[more]
XP_031744705.1	1.9e-89	77.98	uncharacterized protein At5g08430 isoform X3 [Cucumis sativus]	[more]
XP_004148294.1	1.9e-89	77.98	uncharacterized protein At5g08430 isoform X4 [Cucumis sativus] >KAE8646125.1 hyp...	[more]

BLAST of Lsi11G015790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08430.1	6.2e-22	33.60	SWIB/MDM2 domain;Plus-3;GYF	[more]
AT5G23480.1	3.6e-14	26.78	SWIB/MDM2 domain;Plus-3;GYF	[more]
AT3G51120.1	1.5e-12	37.35	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding	[more]
AT2G16485.1	2.0e-12	46.43	nucleic acid binding;zinc ion binding;DNA binding	[more]
AT2G18090.1	1.9e-10	37.93	PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003169	GYF domain	SMART	SM00444	gyf_5	coord: 327..382 e-value: 6.6E-7 score: 38.9
IPR003169	GYF domain	PFAM	PF02213	GYF	coord: 329..369 e-value: 1.7E-12 score: 46.8
IPR003169	GYF domain	PROSITE	PS50829	GYF	coord: 326..380 score: 14.493107
IPR035445	GYF-like domain superfamily	GENE3D	3.30.1490.40		coord: 328..384 e-value: 6.4E-24 score: 85.4
IPR035445	GYF-like domain superfamily	SUPERFAMILY	55277	GYF domain	coord: 321..380
None	No IPR available	PANTHER	PTHR46851	OS01G0884500 PROTEIN	coord: 167..380
None	No IPR available	PANTHER	PTHR46851:SF11	OS01G0884500 PROTEIN	coord: 167..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015790.1	Lsi11G015790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding