Lsi11G014280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G014280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Coiled-coil domain-containing protein 21, putative isoform 2
Location	chr11: 22828319 .. 22830507 (-)
RNA-Seq Expression	Lsi11G014280
Synteny	Lsi11G014280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTTTTGGCCGGAAGATTGGCCGGCAAAGAGGCGGCATATTTTATTCAGGAATCCAAACACGCCGTCGGCCGACTTGCCCAGAAAAACACCACCCAGAAATTACCGGCGCAATCACCGACTTCTTCCCATTCTCCGGCGGACGGTGAATCGCAAGCTGACATTCTTCCTGAGGTCTTAAGACACTCTCTTCCCTCTAAAATCTTCAGGGAGGAATCTGCAGACTCCAACGGATCCCTCTCTACTTCGAAATGGGTTCTTCCTTCGAACCCTAATTACCGCTCTGTCTCTTTAGACGCTCTCAACCCTCTTAGGGCTTTCATCTCCCTTCCCCAGGTTACATTCGGCCCCAAAAGGTTTGTTTCCTTCCCCAAATTGATTCGATTTTCCAATTGATCTGTTTTGGTTGTTAGAAAATGTAAAATTTCAAAATGGAACTTCCAATTCTGCTCGTGTTTGTGTTTCTTAATCCCTATATGCCTAATTGGGTGTTCGTTCGATGAACTGGACTTTGATAGACATCCTTATTGGACGTGATTTTCTTCTTATTTGTTCATTTCTGTGTGACACTGTCTGTGGTGCATAGTTTGTACTTGAAGTTGGTTGTTCTGGTATCTTTTTTCTTTGTGAATTAGCTTTGTACTGGACAATGGGAAATTATTTTCTTTCTGGGCCACAGTATAGGCATGTGCCTTTAACTGAAAAAACAGTAGTTGGTGTAGATTTTTGAGGTGGTGATTGTTGGAGCAAGATGTCAATCCTATAATGATTCTGATGCACTTGGAAAGTTAATAGTATCCATGAAGTTGAAATTTTTTTATTTGCTGCTCAAAAAGTTGCTTGGACATGTGCTTTTGTAACAGTTTGTATCACTTGATGTTGGAAGTGTTGTTCCATCCTTCCTTTATGGACGAGTGAGGAAGGCCTCATCCTTTGTGGTTAGTGGCTTTGGGAGCAGTGGAATACAACTAAGTACAACACGCTCCTGTATGCTGTATCTTTATCTAAAGAGTTTTATAACTGTCTTTTGAAGTTTCCCATCAAAATAACTACCTTTTTCTCTTTTCTTCAACAGGTTGAGCCATATCTTGTAATTCTTCTTTTGTTTTTGTCTTTTGTCTTTGGTTTTGTATTGGCTTCTGTTGGGTTGAACTTTTTTCTGTTTGTCCTGTCTTGCCATTCGTATTCTTTCATTTTCTCTAGAAAGCTCCGTTTCTCATGAAAAAAGTTTAAGTTGAATGCAGGTGGGAATTGCCTCAATCTGAAAACTCAGTACTAGCCTCAACTGCTAACGATTTGCGGACCGACAAGCATACTCCTATTAATCCTGAGAAGTTGAAGGCTGCTGCTGAAGGCCTTGCACATGGTAACCCCTTAAAAGGAAAAATTTCTCTCTTTCTCCCTCATCCTAATCATTAGACCTTTGGTTTTCATTGTAGTTGGAAAGGCCTTTGCTGTAGCTACTGCACTTGTCTTTGGCGGTGCCACCTTGATCTTTGGATTCACCATCTCCAAGCTAGATCTCAACAATGTAAACATGGATTGGATTTCTTAACTTTTGGTGGTCTTTATATATTCACGTACATTTCCATTTAACTCAGATCATGGCAACTTTATTTTTTGACAGGCAAGTGAGATTCAAACAAAAGGAAAAAGCATGATTGAACCAAAGATGGAAATGATTAGAGAGCAACTTGTTCCCTTCAAAGTCTGGGTATGTTGTTATCATTTAAATGATTCTCACAGCATTCACCTGTTACTGGATCTTACTTTTGCCAGTTCTTTAATCTAACCAAGGTTTTTCCCCCGAGTTTTAGGCTGATGATGTGTCAAAAAACTGGCATGTGGAAAGAGATGAAGATATCAAAGAGAAGCCTCTGATAAAGGAACTCTCCAAGATTTTGGGTGCCAAGACTCCCAACTAAACTGCACAATTTTTTTGACCTTTTGTTGTTATCTTGTGTATATCTATCTGTAAAAAATAGGGTATCATATTCCCATCTTCACGGATGGAGTGTAGAACGTTACTGCTTGCTAGCTAAGTAATACATAAGATATCAATGTTGATATAATGCCTGTGGCCGAAAATATAGAACTTTCCAACTTCCTGTTTCTTTCTCAAACTTGTTCTTCACAGCTTGTAATCTAAACCAGCTCCATACTTCCAGGACTCAAGTCGTCGTTTC

mRNA sequence

ATGAGCTTTTTGGCCGGAAGATTGGCCGGCAAAGAGGCGGCATATTTTATTCAGGAATCCAAACACGCCGTCGGCCGACTTGCCCAGAAAAACACCACCCAGAAATTACCGGCGCAATCACCGACTTCTTCCCATTCTCCGGCGGACGGTGAATCGCAAGCTGACATTCTTCCTGAGGTCTTAAGACACTCTCTTCCCTCTAAAATCTTCAGGGAGGAATCTGCAGACTCCAACGGATCCCTCTCTACTTCGAAATGGGTTCTTCCTTCGAACCCTAATTACCGCTCTGTCTCTTTAGACGCTCTCAACCCTCTTAGGGCTTTCATCTCCCTTCCCCAGTTTGTATCACTTGATGTTGGAAGTGTTGTTCCATCCTTCCTTTATGGACGAGTGAGGAAGGCCTCATCCTTTGTGGTTAGTGGCTTTGGGAGCAGTGGAATACAACTAAGTACAACACGCTCCTCCTCAACTGCTAACGATTTGCGGACCGACAAGCATACTCCTATTAATCCTGAGAAGTTGAAGGCTGCTGCTGAAGGCCTTGCACATGTTGGAAAGGCCTTTGCTGTAGCTACTGCACTTGTCTTTGGCGGTGCCACCTTGATCTTTGGATTCACCATCTCCAAGCTAGATCTCAACAATGCAAGTGAGATTCAAACAAAAGGAAAAAGCATGATTGAACCAAAGATGGAAATGATTAGAGAGCAACTTGTTCCCTTCAAAGTCTGGGCTGATGATGTGTCAAAAAACTGGCATGTGGAAAGAGATGAAGATATCAAAGAGAAGCCTCTGATAAAGGAACTCTCCAAGATTTTGGGTGCCAAGACTCCCAACTAAACTGCACAATTTTTTTGACCTTTTGTTGTTATCTTGTGTATATCTATCTGTAAAAAATAGGGTATCATATTCCCATCTTCACGGATGGAGTGTAGAACGTTACTGCTTGCTAGCTAAGTAATACATAAGATATCAATGTTGATATAATGCCTGTGGCCGAAAATATAGAACTTTCCAACTTCCTGTTTCTTTCTCAAACTTGTTCTTCACAGCTTGTAATCTAAACCAGCTCCATACTTCCAGGACTCAAGTCGTCGTTTC

Coding sequence (CDS)

ATGAGCTTTTTGGCCGGAAGATTGGCCGGCAAAGAGGCGGCATATTTTATTCAGGAATCCAAACACGCCGTCGGCCGACTTGCCCAGAAAAACACCACCCAGAAATTACCGGCGCAATCACCGACTTCTTCCCATTCTCCGGCGGACGGTGAATCGCAAGCTGACATTCTTCCTGAGGTCTTAAGACACTCTCTTCCCTCTAAAATCTTCAGGGAGGAATCTGCAGACTCCAACGGATCCCTCTCTACTTCGAAATGGGTTCTTCCTTCGAACCCTAATTACCGCTCTGTCTCTTTAGACGCTCTCAACCCTCTTAGGGCTTTCATCTCCCTTCCCCAGTTTGTATCACTTGATGTTGGAAGTGTTGTTCCATCCTTCCTTTATGGACGAGTGAGGAAGGCCTCATCCTTTGTGGTTAGTGGCTTTGGGAGCAGTGGAATACAACTAAGTACAACACGCTCCTCCTCAACTGCTAACGATTTGCGGACCGACAAGCATACTCCTATTAATCCTGAGAAGTTGAAGGCTGCTGCTGAAGGCCTTGCACATGTTGGAAAGGCCTTTGCTGTAGCTACTGCACTTGTCTTTGGCGGTGCCACCTTGATCTTTGGATTCACCATCTCCAAGCTAGATCTCAACAATGCAAGTGAGATTCAAACAAAAGGAAAAAGCATGATTGAACCAAAGATGGAAATGATTAGAGAGCAACTTGTTCCCTTCAAAGTCTGGGCTGATGATGTGTCAAAAAACTGGCATGTGGAAAGAGATGAAGATATCAAAGAGAAGCCTCTGATAAAGGAACTCTCCAAGATTTTGGGTGCCAAGACTCCCAACTAA

Protein sequence

MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEVLRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVGSVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSSSTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQLVPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN

Homology

[Close]

BLAST of Lsi11G014280 vs. ExPASy TrEMBL
Match: A0A5D3C6S4 (Coiled-coil domain-containing protein 21, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004460 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.6e-110
Identity = 232/328 (70.73%), Postives = 246/328 (75.00%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT QK PA+SP SSHS ADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAQKFPAKSPPSSHSLADGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSL--- 120
           LRHSLPSKIFREESA+S+GS STSKWVLPS+PNYRSVS DALNPLRAF+SLPQ   +   
Sbjct: 61  LRHSLPSKIFREESANSSGSFSTSKWVLPSDPNYRSVSSDALNPLRAFLSLPQNFEMKPP 120

Query: 121 -----------------------------DVGSVVPSFLYGR-VRKASSFVVSGFGSSGI 180
                                        +  S V  F   R +R   +F V  FG  GI
Sbjct: 121 ILLCIFEVLIVETRCQSYNDSDAPGKTIEEGFSEVGDFCGSRELRNRRTFRVEMFGVGGI 180

Query: 181 QLSTTRS-----------------SSTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAV 240
           QLSTT                   +STANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFAV
Sbjct: 181 QLSTTHPVSLSKEWELPQSENLILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAV 240

Query: 241 ATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQLVPFKVWADDVSKN 279
           ATALVFG ATLIFGFT+SKLD+NNASEIQTKGKSMIEPKMEMIR+Q VPFKVWADDVSK 
Sbjct: 241 ATALVFGAATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKK 300

[Close]

BLAST of Lsi11G014280 vs. ExPASy TrEMBL
Match: A0A1S3C0Z0 (uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.4e-110
Identity = 221/281 (78.65%), Postives = 233/281 (82.92%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT QK PA+SP SSHS ADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAQKFPAKSPPSSHSLADGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKIFREESA+S+GS STSKWVLPS+PNYRSVS DALNPLRAF+SLPQ       
Sbjct: 61  LRHSLPSKIFREESANSSGSFSTSKWVLPSDPNYRSVSSDALNPLRAFLSLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTP+NPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSILASTANDLRTDKHTPMNPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFAVATALVFGGATLIFGFT+SKLD+NNASEIQTKGKSMIEPKMEMIR+Q 
Sbjct: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQF 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFKVWADDVSK WHVERD DIKEKPLIKELSKILGAKTPN
Sbjct: 241 VPFKVWADDVSKKWHVERDNDIKEKPLIKELSKILGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. ExPASy TrEMBL
Match: A0A6J1C1Z9 (uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007726 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.9e-107
Identity = 212/281 (75.44%), Postives = 230/281 (81.85%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHA+GRL QKNTTQK PAQ P SSHSPADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAIGRLVQKNTTQKFPAQPPPSSHSPADGELQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKIFRE+SADSNGSL TSKWVLPS+PN RSVS DALNPLRAF++LPQ       
Sbjct: 61  LRHSLPSKIFREQSADSNGSLVTSKWVLPSDPNRRSVSSDALNPLRAFLTLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLR DKHT INPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSVLASTANDLRADKHTTINPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFA+ATALVFGGATLIFGFT+SKLDLNN++EIQTKG+++IEPKMEMIREQL
Sbjct: 181 AEGLAHVGKAFAIATALVFGGATLIFGFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFK WA+D+SK WHVERD+DIKEKPLIKELSK LGAKTPN
Sbjct: 241 VPFKTWAEDMSKKWHVERDKDIKEKPLIKELSKTLGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. ExPASy TrEMBL
Match: A0A0A0K240 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 5.0e-106
Identity = 214/281 (76.16%), Postives = 227/281 (80.78%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT  K PAQSP SSHS   GE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAHKFPAQSPPSSHSLPHGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPS IFREESA+S+GS STSKWVLPS+PNYRSVS ++LNPLR F+SLPQ       
Sbjct: 61  LRHSLPSTIFREESANSSGSFSTSKWVLPSDPNYRSVSSNSLNPLRDFLSLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTPINPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSILASTANDLRTDKHTPINPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFA ATALVFGGATLIFGFT+SKLD+NNASEIQTKGK MIEPKMEMIR+QL
Sbjct: 181 AEGLAHVGKAFAAATALVFGGATLIFGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFKVWADD+SK WHVERD DIKEKPLIKELSKILGAKTPN
Sbjct: 241 VPFKVWADDMSKKWHVERDNDIKEKPLIKELSKILGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. ExPASy TrEMBL
Match: A0A6J1I0D6 (uncharacterized protein LOC111468292 OS=Cucurbita maxima OX=3661 GN=LOC111468292 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 4.4e-102
Identity = 209/281 (74.38%), Postives = 226/281 (80.43%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLA KEAAYFIQESKHAVGRLA     QK PAQ P SS+S  DGESQADILPEV
Sbjct: 1   MSFLAGRLAAKEAAYFIQESKHAVGRLA-----QKFPAQPPPSSNSTTDGESQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKI+RE+SADS+GSLSTSKWVLPSNPNYRSVS D+LNPLRAF+SLPQ       
Sbjct: 61  LRHSLPSKIYREQSADSHGSLSTSKWVLPSNPNYRSVSSDSLNPLRAFVSLPQV------ 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTPINPEKLKAA
Sbjct: 121 --------------------SFGPKRWELPQSGNSVLASTANDLRTDKHTPINPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAH+GKAFAVATALVFGGATLIFG T+SKLDLNNA+EIQTKGKSMIEP+M+MIREQL
Sbjct: 181 AEGLAHIGKAFAVATALVFGGATLIFGITMSKLDLNNANEIQTKGKSMIEPRMKMIREQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFKVWAD +SK WHVER++D KEKPLIKELSK LGAKTPN
Sbjct: 241 VPFKVWADGMSKKWHVEREKDTKEKPLIKELSKTLGAKTPN 250

[Close]

BLAST of Lsi11G014280 vs. NCBI nr
Match: XP_038887935.1 (uncharacterized protein LOC120077905 [Benincasa hispida])

HSP 1 Score: 420.2 bits (1079), Expect = 1.4e-113
Identity = 225/281 (80.07%), Postives = 235/281 (83.63%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLA KEAAYFIQESKHAVGRLAQKN  QK PAQSP SSHSP DGESQADILPEV
Sbjct: 1   MSFLAGRLAAKEAAYFIQESKHAVGRLAQKNPAQKFPAQSPPSSHSPVDGESQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKIFREESADSNGS STSKWVLPSNPNYRSVS+D+LNPLRAF+SLPQ       
Sbjct: 61  LRHSLPSKIFREESADSNGSFSTSKWVLPSNPNYRSVSIDSLNPLRAFLSLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTP+NPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSVLASTANDLRTDKHTPVNPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFAVATALVFGGATLIFG+TISKLDLNNASEIQTKGKSMIEPKMEMIREQL
Sbjct: 181 AEGLAHVGKAFAVATALVFGGATLIFGYTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           +PFKVWADD+SK WHVERDEDIKEKPLIKELSKILGAKTPN
Sbjct: 241 IPFKVWADDMSKKWHVERDEDIKEKPLIKELSKILGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. NCBI nr
Match: KAA0040223.1 (Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. makuwa] >TYK07125.1 Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 5.3e-110
Identity = 232/328 (70.73%), Postives = 246/328 (75.00%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT QK PA+SP SSHS ADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAQKFPAKSPPSSHSLADGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSL--- 120
           LRHSLPSKIFREESA+S+GS STSKWVLPS+PNYRSVS DALNPLRAF+SLPQ   +   
Sbjct: 61  LRHSLPSKIFREESANSSGSFSTSKWVLPSDPNYRSVSSDALNPLRAFLSLPQNFEMKPP 120

Query: 121 -----------------------------DVGSVVPSFLYGR-VRKASSFVVSGFGSSGI 180
                                        +  S V  F   R +R   +F V  FG  GI
Sbjct: 121 ILLCIFEVLIVETRCQSYNDSDAPGKTIEEGFSEVGDFCGSRELRNRRTFRVEMFGVGGI 180

Query: 181 QLSTTRS-----------------SSTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAV 240
           QLSTT                   +STANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFAV
Sbjct: 181 QLSTTHPVSLSKEWELPQSENLILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAV 240

Query: 241 ATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQLVPFKVWADDVSKN 279
           ATALVFG ATLIFGFT+SKLD+NNASEIQTKGKSMIEPKMEMIR+Q VPFKVWADDVSK 
Sbjct: 241 ATALVFGAATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKK 300

[Close]

BLAST of Lsi11G014280 vs. NCBI nr
Match: XP_008455465.1 (PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo])

HSP 1 Score: 407.9 bits (1047), Expect = 6.9e-110
Identity = 221/281 (78.65%), Postives = 233/281 (82.92%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT QK PA+SP SSHS ADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAQKFPAKSPPSSHSLADGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKIFREESA+S+GS STSKWVLPS+PNYRSVS DALNPLRAF+SLPQ       
Sbjct: 61  LRHSLPSKIFREESANSSGSFSTSKWVLPSDPNYRSVSSDALNPLRAFLSLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTP+NPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSILASTANDLRTDKHTPMNPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFAVATALVFGGATLIFGFT+SKLD+NNASEIQTKGKSMIEPKMEMIR+Q 
Sbjct: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQF 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFKVWADDVSK WHVERD DIKEKPLIKELSKILGAKTPN
Sbjct: 241 VPFKVWADDVSKKWHVERDNDIKEKPLIKELSKILGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. NCBI nr
Match: XP_022135886.1 (uncharacterized protein LOC111007726 [Momordica charantia])

HSP 1 Score: 397.1 bits (1019), Expect = 1.2e-106
Identity = 212/281 (75.44%), Postives = 230/281 (81.85%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHA+GRL QKNTTQK PAQ P SSHSPADGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAIGRLVQKNTTQKFPAQPPPSSHSPADGELQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPSKIFRE+SADSNGSL TSKWVLPS+PN RSVS DALNPLRAF++LPQ       
Sbjct: 61  LRHSLPSKIFREQSADSNGSLVTSKWVLPSDPNRRSVSSDALNPLRAFLTLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLR DKHT INPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSVLASTANDLRADKHTTINPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFA+ATALVFGGATLIFGFT+SKLDLNN++EIQTKG+++IEPKMEMIREQL
Sbjct: 181 AEGLAHVGKAFAIATALVFGGATLIFGFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFK WA+D+SK WHVERD+DIKEKPLIKELSK LGAKTPN
Sbjct: 241 VPFKTWAEDMSKKWHVERDKDIKEKPLIKELSKTLGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. NCBI nr
Match: XP_004144510.1 (uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hypothetical protein Csa_020421 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.0e-105
Identity = 214/281 (76.16%), Postives = 227/281 (80.78%), Query Frame = 0


Query: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTTQKLPAQSPTSSHSPADGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNT  K PAQSP SSHS   GE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAHKFPAQSPPSSHSLPHGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYRSVSLDALNPLRAFISLPQFVSLDVG 120
           LRHSLPS IFREESA+S+GS STSKWVLPS+PNYRSVS ++LNPLR F+SLPQ       
Sbjct: 61  LRHSLPSTIFREESANSSGSFSTSKWVLPSDPNYRSVSSNSLNPLRDFLSLPQVT----- 120

Query: 121 SVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKHTPINPEKLKAA 180
                                FG    +L  + +S   STANDLRTDKHTPINPEKLKAA
Sbjct: 121 ---------------------FGPKRWELPQSENSILASTANDLRTDKHTPINPEKLKAA 180

Query: 181 AEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEMIREQL 240
           AEGLAHVGKAFA ATALVFGGATLIFGFT+SKLD+NNASEIQTKGK MIEPKMEMIR+QL
Sbjct: 181 AEGLAHVGKAFAAATALVFGGATLIFGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQL 240

Query: 241 VPFKVWADDVSKNWHVERDEDIKEKPLIKELSKILGAKTPN 279
           VPFKVWADD+SK WHVERD DIKEKPLIKELSKILGAKTPN
Sbjct: 241 VPFKVWADDMSKKWHVERDNDIKEKPLIKELSKILGAKTPN 255

[Close]

BLAST of Lsi11G014280 vs. TAIR 10
Match: AT1G05060.1 (unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-63
Identity = 145/286 (50.70%), Postives = 184/286 (64.34%), Query Frame = 0


Query: 1   MSFL-AGRLAGKEAAYFIQESKHAVGRLAQKN--TTQKLPAQSPTSSHSPADGESQADIL 60
           MSFL AGRLAGKEAAYF QESKHAV RLA+K+  T +KLP      S  P   E Q D+L
Sbjct: 1   MSFLGAGRLAGKEAAYFFQESKHAVNRLAEKSPATGKKLP------SSPPDPPEIQPDVL 60

Query: 61  PEVLRHSLPSKIFREESADSNGSLSTSKWVLPSNPNYR-SVSLDALNPLRAFISLPQFVS 120
           PE+LRHSLPSKI+     D +     SKW L S+PN   S+S D LNPLR ++SLPQ   
Sbjct: 61  PEILRHSLPSKIY-GRPPDPSSLSQFSKWALESDPNATVSISPDVLNPLRGYVSLPQVT- 120

Query: 121 LDVGSVVPSFLYGRVRKASSFVVSGFGSSGIQLSTTRSS---STANDLRTDKH-TPINPE 180
                                    FG     L  + +S   STAN+LR D++ TP+NPE
Sbjct: 121 -------------------------FGRRRWDLPESENSVLASTANELRRDRYGTPVNPE 180

Query: 181 KLKAAAEGLAHVGKAFAVATALVFGGATLIFGFTISKLDLNNASEIQTKGKSMIEPKMEM 240
           KLKAA EGL H+GKAFA AT ++FG ATL+FG   SKLD+ NA +I+TKGK + +PK+E 
Sbjct: 181 KLKAAGEGLQHIGKAFAAATIIIFGSATLVFGTAASKLDMRNADDIRTKGKDLFQPKLES 240

Query: 241 IREQLVPFKVWADDVSKNWHVERD--EDIKEKPLIKELSKILGAKT 277
           ++EQ+ P + WA+++SK WH+E +    IKEKP++KELSKILG K+
Sbjct: 241 MKEQVEPLRTWAENMSKKWHIENEGGNTIKEKPILKELSKILGPKS 253

The following BLAST results are available for this feature:

BLAST of Lsi11G014280 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G014280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6S4	2.6e-110	70.73	Coiled-coil domain-containing protein 21, putative isoform 2 OS=Cucumis melo var...	[more]
A0A1S3C0Z0	3.4e-110	78.65	uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=...	[more]
A0A6J1C1Z9	5.9e-107	75.44	uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0K240	5.0e-106	76.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1	[more]
A0A6J1I0D6	4.4e-102	74.38	uncharacterized protein LOC111468292 OS=Cucurbita maxima OX=3661 GN=LOC111468292...	[more]

BLAST of Lsi11G014280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887935.1	1.4e-113	80.07	uncharacterized protein LOC120077905 [Benincasa hispida]	[more]
KAA0040223.1	5.3e-110	70.73	Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. ...	[more]
XP_008455465.1	6.9e-110	78.65	PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo]	[more]
XP_022135886.1	1.2e-106	75.44	uncharacterized protein LOC111007726 [Momordica charantia]	[more]
XP_004144510.1	1.0e-105	76.16	uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hypothetical ...	[more]

BLAST of Lsi11G014280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05060.1	1.4e-63	50.70	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	PANTHER	PTHR36704:SF1	PROTEIN, PUTATIVE-RELATED	coord: 151..277
None	No IPR available	PANTHER	PTHR36704:SF1	PROTEIN, PUTATIVE-RELATED	coord: 1..114
None	No IPR available	PANTHER	PTHR36704	PROTEIN, PUTATIVE-RELATED	coord: 151..277
None	No IPR available	PANTHER	PTHR36704	PROTEIN, PUTATIVE-RELATED	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G014280.1	Lsi11G014280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane