Lsi11G011600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G011600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SAUR-like auxin-responsive protein family
Location	chr11: 20150496 .. 20150992 (-)
RNA-Seq Expression	Lsi11G011600
Synteny	Lsi11G011600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATGTACAGTCGCAATCGCTACCAAGTCGCTGTTAATCAGTTTGAGAACACTCCCCATGTGATGATTCTAGCCGTATGTTTCTACTGTTCATCTCACAATGGCACCCACATTAGCTTAGCCACATTTTGTAGACTCTTCACAATTGACTGGTGATCTATATATACGTATATCATCCATAGAAGGAAATCTTCTTTTTCGAAGTTTAAATCTTCTTATACAAGTATTCAAGATCAAGAGAGACAAATATGGCTATCAAATTACCTCATGTCATGCAGATTCTTCATTCTTCATCGATTGCTCGAAATGCTGCAGGGTCTTCTTCCTTATCAAACAATGTTTGAAGAGGGTAGAAGCAAAAGAAGAGATATGAAGTCCCAATATCTTACATGAATGAGCCATCATTTCAAAAGTTGCTCAGCTGGGCCAAGGAAGAATTTGAATACGACAATCCCATGGGAGGCCTCGTAGAGAAAATGTATTTACCGAACTAG

mRNA sequence

ATGTTCATGTACAGTCGCAATCGCTACCAAGTCGCTGTTAATCAGTTTGAGAACACTCCCCATGTGATGATTCTAGCCAAGCAAAAGAAGAGATATGAAGTCCCAATATCTTACATGAATGAGCCATCATTTCAAAAGTTGCTCAGCTGGGCCAAGGAAGAATTTGAATACGACAATCCCATGGGAGGCCTCGTAGAGAAAATGTATTTACCGAACTAG

Coding sequence (CDS)

ATGTTCATGTACAGTCGCAATCGCTACCAAGTCGCTGTTAATCAGTTTGAGAACACTCCCCATGTGATGATTCTAGCCAAGCAAAAGAAGAGATATGAAGTCCCAATATCTTACATGAATGAGCCATCATTTCAAAAGTTGCTCAGCTGGGCCAAGGAAGAATTTGAATACGACAATCCCATGGGAGGCCTCGTAGAGAAAATGTATTTACCGAACTAG

Protein sequence

MFMYSRNRYQVAVNQFENTPHVMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGLVEKMYLPN

Homology

[Close]

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-09
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VPISY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VP+SY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VP+SY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot
Match: Q41220 (Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 27 KQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          ++KKRY VP+SY+N+P FQ+LLS ++EEF YD+PMGGL
Sbjct: 35 QKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGL 72

[Close]

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot
Match: P33079 (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-08
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 30 KRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          +R+ +P+SY+NEPSFQ+LLS A+EEF YD+PMGGL
Sbjct: 40 RRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGL 74

[Close]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL
Match: A0A7J6H171 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_024041 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +  +QKKRY VP+SY+NEP+FQ+LL+ A+EEF YD+PMGGL
Sbjct: 39 VYVGEEQKKRYVVPLSYLNEPAFQELLNMAEEEFGYDHPMGGL 81

[Close]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL
Match: A0A172J232 (Small auxin up regulated protein OS=Boehmeria nivea OX=83906 GN=SAUR49 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 28 QKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          QKKRY VP+SY+NEP+FQ+LLS A+EEF YD+PMGGL
Sbjct: 45 QKKRYIVPLSYLNEPAFQELLSLAEEEFGYDHPMGGL 81

[Close]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL
Match: A0A2N9IM99 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54588 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +  +QKKR+ VPISY+NEPSFQ+LLS A+EEF +D+PMGGL
Sbjct: 33 VYVGEEQKKRFVVPISYLNEPSFQELLSKAEEEFGFDHPMGGL 75

[Close]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL
Match: A0A067JXR9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19618 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V I  K+KKRY VPISY+NEPSFQ LLS A+EE+ +D+PMGGL
Sbjct: 35 VYIGEKEKKRYLVPISYLNEPSFQDLLSKAEEEYGFDHPMGGL 77

[Close]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL
Match: W9RMX7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012229 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 28 QKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          QKKRY VPISY+NEP+FQ+LLS A+EEF Y++PMGGL
Sbjct: 41 QKKRYVVPISYLNEPAFQELLSLAEEEFGYEHPMGGL 77

[Close]

BLAST of Lsi11G011600 vs. NCBI nr
Match: XP_038887252.1 (indole-3-acetic acid-induced protein ARG7-like [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 22  VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
           V +  +QKKRY VPISY+NEPSFQ+LLS A+EEF YD+PMGGL
Sbjct: 111 VYVGEEQKKRYVVPISYLNEPSFQRLLSKAEEEFGYDHPMGGL 153

[Close]

BLAST of Lsi11G011600 vs. NCBI nr
Match: XP_030509906.1 (auxin-responsive protein SAUR21 [Cannabis sativa] >KAF4375310.1 hypothetical protein G4B88_021976 [Cannabis sativa] >KAF4375382.1 hypothetical protein F8388_024041 [Cannabis sativa] >KAF4388380.1 hypothetical protein G4B88_013217 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-07
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +  +QKKRY VP+SY+NEP+FQ+LL+ A+EEF YD+PMGGL
Sbjct: 39 VYVGEEQKKRYVVPLSYLNEPAFQELLNMAEEEFGYDHPMGGL 81

[Close]

BLAST of Lsi11G011600 vs. NCBI nr
Match: AMQ09574.1 (small auxin up regulated protein [Boehmeria nivea])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 28 QKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          QKKRY VP+SY+NEP+FQ+LLS A+EEF YD+PMGGL
Sbjct: 45 QKKRYIVPLSYLNEPAFQELLSLAEEEFGYDHPMGGL 81

[Close]

BLAST of Lsi11G011600 vs. NCBI nr
Match: KAF8069829.1 (hypothetical protein N665_1131s0027 [Sinapis alba])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 28 QKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          QKKRY VPISY+N+PSFQ LLS ++EEFE+D+PMGGL
Sbjct: 43 QKKRYLVPISYLNQPSFQALLSTSEEEFEFDHPMGGL 79

[Close]

BLAST of Lsi11G011600 vs. NCBI nr
Match: AMQ09576.1 (small auxin up regulated protein [Boehmeria nivea])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V I   QKKRY VP+SY+NEP+FQ+LLS A+EEF Y++PMGGL
Sbjct: 39 VYIGVDQKKRYVVPLSYLNEPAFQELLSLAEEEFGYEHPMGGL 81

[Close]

BLAST of Lsi11G011600 vs. TAIR 10
Match: AT2G21200.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-10
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VP+S++N+PSFQ LLS A+EEF +D+PMGGL
Sbjct: 28 VYVGESQKKRYMVPVSFLNQPSFQALLSTAEEEFGFDHPMGGL 70

[Close]

BLAST of Lsi11G011600 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VPISY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-10
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VP+SY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. TAIR 10
Match: AT5G18060.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 22 VMILAKQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          V +   QKKRY VP+SY+N+PSFQ LLS ++EEF +D+PMGGL
Sbjct: 31 VYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

[Close]

BLAST of Lsi11G011600 vs. TAIR 10
Match: AT4G38850.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 27 KQKKRYEVPISYMNEPSFQKLLSWAKEEFEYDNPMGGL 65
          ++KKRY VP+SY+N+P FQ+LLS ++EEF YD+PMGGL
Sbjct: 35 QKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGL 72

The following BLAST results are available for this feature:

BLAST of Lsi11G011600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJG0	9.2e-09	65.12	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FK62	1.2e-08	62.79	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJF6	1.6e-08	62.79	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S...	[more]
Q41220	2.7e-08	65.79	Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 S...	[more]
P33079	3.5e-08	68.57	Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Lsi11G011600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6H171	4.0e-07	65.12	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_024041 PE=3 SV=1	[more]
A0A172J232	5.3e-07	75.68	Small auxin up regulated protein OS=Boehmeria nivea OX=83906 GN=SAUR49 PE=2 SV=1	[more]
A0A2N9IM99	6.9e-07	67.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54588 PE=3 SV=1	[more]
A0A067JXR9	6.9e-07	69.77	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19618 PE=3 SV=1	[more]
W9RMX7	6.9e-07	75.68	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012229 PE=3 SV=1	[more]

BLAST of Lsi11G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887252.1	1.3e-07	72.09	indole-3-acetic acid-induced protein ARG7-like [Benincasa hispida]	[more]
XP_030509906.1	8.3e-07	65.12	auxin-responsive protein SAUR21 [Cannabis sativa] >KAF4375310.1 hypothetical pro...	[more]
AMQ09574.1	1.1e-06	75.68	small auxin up regulated protein [Boehmeria nivea]	[more]
KAF8069829.1	1.1e-06	75.68	hypothetical protein N665_1131s0027 [Sinapis alba]	[more]
AMQ09576.1	1.4e-06	67.44	small auxin up regulated protein [Boehmeria nivea]	[more]

BLAST of Lsi11G011600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21200.1	6.6e-10	62.79	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	6.6e-10	65.12	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	8.6e-10	62.79	SAUR-like auxin-responsive protein family	[more]
AT5G18060.1	1.1e-09	62.79	SAUR-like auxin-responsive protein family	[more]
AT4G38850.1	1.9e-09	65.79	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 20..63 e-value: 2.6E-10 score: 40.3
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 21..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011600.1	Lsi11G011600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin