Lsi11G011310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G011310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein GIS2
Location	chr11: 19757390 .. 19762582 (+)
RNA-Seq Expression	Lsi11G011310
Synteny	Lsi11G011310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCACTTCACAAATCTTCGTTCTTCAGCGGCTGTTCTCCCACGAATCTCATCCCGCTGCAGCTTCGTTCGTAATTTTGCATCTTCAGCCATTTGACCTTCGGCAATATCGGCCACAAGTACATAGCCATTGGCATTAGGTTCGTTTCTCTTTCATTTCTGATTTACTGTATTGTTTTATAGTCTCATTTGATTTCTAGGGCTACAGGCTCAGGGTACGTTTTTCGTTATTTTTCCATAGTTCATGTACACGTATATTCTCCACCATTGGAATGAGAAATAAAATTTTAATTTTCTGTATGCAATTTTGTTTGTAAGATTTCCTGATGCATTTTGTTGCTTCTGCATCTTTCTTTCGGGTATGTGAACGGGTAAATGGGGAAGTGGTTTGTAAGTTACAGCGTGTAGATTACATGAATGAAATAAGCTAGGCCCGTGAATTGTGTTTGTTTGTTTGTATATGAATGTTTTTTTGGAATAATCTCTCCACGAGTATGAAAGTGTTCTAAAAGCGATGCCAGATGATCACGTCTGTAGTTATTATTGGCGTTAGCGATGGTAAATAGTTTTTGTTAGCTTTGTTTTTTCTGTTAGAAAAATATTTATCCAGTTTATGTCAATGTAGTTTCTAACATTCTTTTGGATTTGTGGTGTAAATCAATACTGGAGAATTTCATTTCAAATGATCATAAAACGTTGAATGACTGTGAAAACCACAGATAAAAGACTTAAACTACAAGAAGCCTAGAATCTTGTAATATAGCTTCTCATCTGTTATGGCTTGGCCCTTTAGAATTAGCAAGCCCCAAGAAAACATGTAAGGCTGAAGTTACACCAAATGCCTCCCTCTTCAAAAGAACTTGTCCCAGAGTGATCAAACAGCAAGCTGAAACTCATCAGGGGCATGATATTTGAATAAGTCAGCAACATTAAAAGTGGAGGAAAACTTGTACTGAGAAGGGAGGTCAATCTTGTAAGCACTAAAACTAATCTTCTGTAATATTGGAAAAGGTCCACTTTTCTTAGGCAGTAACTTCAAATTCTGTCCCTTTGAATTGACTATTTCCTCGATCCCAAATTGCTTTCTTGTCTTGATCCCTCCGTTTCTCTAGCCTTTGTTTCTCCACTCTAGAAGCAAAAGTAATGGCATCAATAATATAATATAGAAGTTGTAGTTTCTCCTCTCTCTATTTTATATATACACATATATATCTTCTCTCACTCTGTTGACGGACCGAGCTAAATTGGTTCTTGTACTTAACCACTTGAATTCCTCCGTATAGTATTGAATGTTCCAATTTCCTTGGTTGCAGTGTTGGTACTGATCATAAGGTTGTTCATAATCGGTGGGAAGAAATTGATTGTTCATAAGCTTCAACATTTTTGGCCACATTCATATTGGTCTCTTTCCATATCTCCTTCAGTTGGATTGTAGTTGTTCCCACCAATCGAAGGCCTCACTCTCAAGTTTAAAAGCAACCAACTTAACCTTTTTGTTTTTTGGGGTACCAATGTATTCCAAAAAGGTTTCAACGTCCTTAATCCCGTAAAAAAAACTCCTTTAGATCCAATTTCCCACTAAATGTGGGGAGGTTTATTTTCGTCTTATAATCCCCATAATTGGTCGGGTTAACTTGCTGATACAATGGCTTTTCATTGATAAATGGGACTTGTCGGAGTAGGTCCTCATCCTCTTCAATCGAGCGATCTATTTCAAGTAATTTAGGCCCGTCTAATGGAGGTCTACGGCTGGTTGAAGTTTCTTGGAGGTTCTTGAATATCCTGGCGAACTTCTTGAACCCTTCTTGGTGCTGGAAATTGTTGAACTTTCTGGGGTGGGTAAACCTCGTCTCTCATTCTTTCTTTTTTATGATGACTTTTTGTAATTATTCCACAGGAAGCATTTTATCTGTTCTTTAGGAGTTTTGTGGGTTTTTTTTTTGTATGGTCCGTACTCATATTTTCCTCAATGAAAGTAGTTGTTTCTATTTAAAAAAAAATTAAAAAAAAGAAAAGAAAAGAAAAAACCCTTTTATAGAAGGAGAACTGAGTTAGACACAACTTGTTGACCTCCTGAACCGGTAACAACTAAACTTCCAGCCAAAAACTAACTAAAATAAACCACTTACATCAAACACGAAGTGTTAAAAATCACAAGTATGTTAACCATGGATGAAACACTTAAACTACATGAAACCAACACACTTGTAAAGAATTAGCAAAGAAGCCCCAAGAAAACATGCAAGGCTGAAGTTCCCTAATTGGCTAATTATAGGACTAAGGTTGAGAATTTTAACGGCTGCACAAGTTGACTGTATAACCTTTTCTGCAAAATTAGTAATTAGTTGAAGAGCTGTTTCCAAAATGATCACTCGTGGTGGGATTATGGATTACCAATTGTAAACTGTGGAATTTACAAAAATCATTGACATAAATGACTTAATAGTTATAATAGTGAAAGAAGTTGATGCAGAATTATGGAATGTGAATTTTAGAGGATGTTGTTTGTGGATGGTTCACTACTGGATAAATTCTTAGCTTGGTGACGTGTTGGTAATATTCACTTGAGCCACTCTTGAAATTGTATGAAGAATGTAGTCGAAGAATTGGATAATTATTCTTGGATGTTGGGGGGATGTGGTATTTGTTTTGTTGGAATTTTACTACTTTGTTGAATGGGATTGGAAATTGGTGTTTTCTATTTGAAGAGAAAAGAAAGAGTTTGGTTTGGATTCATGGATATGAATTTGGGTGTGTGGTTGTTGTGTGGACAGGGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTATTTTCACGAATCAGTGGGGATAAGTATTGAAGGATAAGTTTGGAAATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGCTCTGATCGTTTTTCCTATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGGTTTCTGATTTTGATAAATTATTTATATATCTCATTTCTGATATGTAGGCTGGGGAAGAATCTGCAGATGTGTTTTTTTTGTTATGCAGTCATGTTATTTTTTAATCCCCCTGTCCTCCTCCTCCTGGGTATATTTCATTCATTCATCAATTAGTATCTTGTATCTTCTCAATACACACACCGATACATGTAACACTGAGACATGGTCATGGAGTCTTATGTTTTAAAGGAATTATGTAGCCATTGCATTATTGTGCTATGCTGGTTTTGCATGTTTTGTGTTTGATGAACTTGTCAAATCTCTGCATTAACCATGATTGGGCAGACATGGAAGTCTCCTGCACAGCTGCAATACAATATAATATCCATGTTATACTAATTGCATTGTTGATGCCGATGTTTCTGTTTTTTGGACATGATCATATGGGTATGAAAAAAATGTCTTTGTTCTGTCATGATATAGGTTTGTCATTTATTGTGTAAGATCTCAAGGGTGGAGTTCATAATGCAATTTTGGTGTGCGTAAGATTATAAACTGCTTTCTTCACGGATTCACCTTGTTCCTGTTGTGAGTTGGTGGGAAAAACTGATGACTTATGTTTGAGTTGTTTACCCTCTATAACGTATAAAAAAAAGTTTGGGGGTGTTGCTTATTGGGACCATATAACCGTGTGGATGGATCCCTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTAATTTTATTTCTTCATTATGTATATCTTTCGTTTTCCCTTGCTTAGCATTGAGCTGCTAATCTTAATCTCATTTTATTGCCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGACCTGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGTAAGGACACTTGATCTTGTGCATATTGCCTTTGTCGCCTATTTGGTCACAGAAGTTTATTGGGAGAATGCTCGTTTTTATTACCTAAATATTCACTATTCTACTTATTTCTGGCATTTCAAAAAGTGGCTTGTTATTTTCCATTCTACTTGACATGAAAAATGCGGATTTGGTCCCATACTATCATGTCATTGGTTGGGAGTATTCAACGTTTGTATCCTCAAATCAGGAGTTTCACTAATCTTAATTTATAATTTGAGATTTGGAGTTGACTTAGAAGATATATTGCAAGATGCTGTCAAAGCGGGAATCTGATTATAATTGCATATTTGGCACACTTGTGTGAACAATGATCCATTTTTACTTTTGGATTAGTTCTCAATTGATAAATTCATGATACTGCATCTACTAGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACTTGTGGTAAGGCGGGACATCGGGCCAGGGATTGCACAGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCTGCTGATTGCACGAATGAGAAGGCATGCAACAATTGCAGGAAGACTGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAACGTCCTCGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGAAGTGTACGTGGTGGTGCTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACTTGGCATACGAATGTCCTTCTGGTCGGTTTATGGAGCGTTATCCTAGGAGGTACTAATGATCAAAAGAGCTAGACATATGCGTTAGACCTTTGGATTTTGCTTCGAGTTTAGACAATTCGGGAACTAAACTCTATAGATTGCTCTACTTGCTTATGTTGTAGTATTTGCTTGTGCTATGTACCAATCATTGTTTTACGCTTTAAGACGATGAATTTTCAGTATTGTTGATTTTGGTTCTATATAATAAGACTTTCTATCAATGATTCAGTAGTTGTTGATTTTCCTCGTGTTAATTGTAAACTATGAATTATGATTTATTTTGAGATGCTAGTTGTAAACTTTTAACTTACATTACACATCTGGATTATAAGTCTATTCCTTCTCAGTGGTGCTAAGGC

mRNA sequence

CTGCACTTCACAAATCTTCGTTCTTCAGCGGCTGTTCTCCCACGAATCTCATCCCGCTGCAGCTTCGTTCGTAATTTTGCATCTTCAGCCATTTGACCTTCGGCAATATCGGCCACAAGTACATAGCCATTGGCATTAGTGTTGGTACTGATCATAAGGTTGTTCATAATCGGTGGGAAGAAATTGATTGTTCATAAGCTTCAACATTTTTGGCCACATTCATATTGGTCTCTTTCCATATCTCCTTCAGTTGGATTGTAGTTGTTCCCACCAATCGAAGGCCTCACTCTCAAGTTTAAAAGCAACCAACTTAACCTTTTTGTTTTTTGGGGTACCAATGTATTCCAAAAAGGTTTCAACGTCCTTAATCCCGTAAAAAAAACTCCTTTAGATCCAATTTCCCACTAAATGTGGGGAGGTTTATTTTCGTCTTATAATCCCCATAATTGGTCGGGTTAACTTGCTGATACAATGGCTTTTCATTGATAAATGGGACTTGTCGGAGTAGGTCCTCATCCTCTTCAATCGAGCGATCTATTTCAAGTAATTTAGGCCCGTCTAATGGAGGTCTACGGCTGGTTGAAGTTTCTTGGAGGTTCTTGAATATCCTGGCGAACTTCTTGAACCCTTCTTGGTGCTGGAAATTGTTGAACTTTCTGGGGGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTATTTTCACGAATCAGTGGGGATAAGTATTGAAGGATAAGTTTGGAAATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGCTCTGATCGTTTTTCCTATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGACCTGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACTTGTGGTAAGGCGGGACATCGGGCCAGGGATTGCACAGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCTGCTGATTGCACGAATGAGAAGGCATGCAACAATTGCAGGAAGACTGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAACGTCCTCGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGAAGTGTACGTGGTGGTGCTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACTTGGCATACGAATGTCCTTCTGGTCGGTTTATGGAGCGTTATCCTAGGAGGTACTAATGATCAAAAGAGCTAGACATATGCGTTAGACCTTTGGATTTTGCTTCGAGTTTAGACAATTCGGGAACTAAACTCTATAGATTGCTCTACTTGCTTATGTTGTAGTATTTGCTTGTGCTATGTACCAATCATTGTTTTACGCTTTAAGACGATGAATTTTCAGTATTGTTGATTTTGGTTCTATATAATAAGACTTTCTATCAATGATTCAGTAGTTGTTGATTTTCCTCGTGTTAATTGTAAACTATGAATTATGATTTATTTTGAGATGCTAGTTGTAAACTTTTAACTTACATTACACATCTGGATTATAAGTCTATTCCTTCTCAGTGGTGCTAAGGC

Coding sequence (CDS)

ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGCTCTGATCGTTTTTCCTATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGACCTGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACTTGTGGTAAGGCGGGACATCGGGCCAGGGATTGCACAGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCTGCTGATTGCACGAATGAGAAGGCATGCAACAATTGCAGGAAGACTGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAACGTCCTCGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGAAGTGTACGTGGTGGTGCTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACTTGGCATACGAATGTCCTTCTGGTCGGTTTATGGAGCGTTATCCTAGGAGGTACTAA

Protein sequence

MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

Homology

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BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot
Match: Q04832 (DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.0e-30
Identity = 83/274 (30.29%), Postives = 113/274 (41.24%), Query Frame = 0


Query: 47  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCRE 106
           C+NC + GH+ARECP            C  CG  GH++ EC  ++         C+ C E
Sbjct: 18  CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77

Query: 107 PGHMASSCPNEG--------ICHTCGKAGHRARDCT------------------APPLPP 166
            GHM+  CPN           C+ CG+ GH +RDC                   A     
Sbjct: 78  AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYS 137

Query: 167 GDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DP 226
           GD R C  C   GHI+ DC N         ++ C  C   GH++RDCPN         D 
Sbjct: 138 GD-RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 197

Query: 227 ICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRD 250
            C  C  SGH++R+CP +                    G++G  D  C  C + GH+SR+
Sbjct: 198 KCYKCGESGHMSRECPSA--------------------GSTGSGDRACYKCGKPGHISRE 257

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BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot
Match: P53849 (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GIS2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-25
Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = 0


Query: 47  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMASSCPNE 106
           C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GH+ S C  +
Sbjct: 6   CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65

Query: 107 GICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIAADCTNEKA-----CNNCRKT 166
             C  C + GH +R+C  P       ++ C  C    H+A DC  E       C  C + 
Sbjct: 66  R-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQA 125

Query: 167 GHLARDCPNDPICNLCNVSGHVARQCPKS 185
           GH++RDC ND +C  CN +GH+++ CPK+
Sbjct: 126 GHMSRDCQNDRLCYNCNETGHISKDCPKA 153

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BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot
Match: Q3T0Q6 (Cellular nucleic acid-binding protein OS=Bos taurus OX=9913 GN=CNBP PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-22
Identity = 62/167 (37.13%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 45  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TT 104
           N C  C R GH+ARECP                         IC+ CG  GH+A +C   
Sbjct: 4   NECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQ 63

Query: 105 KSLCWNCREPGHMASSC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQ 164
           +  C+NC   GH+A  C       E  C+ CGK GH ARDC        D + C +C + 
Sbjct: 64  EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEF 123

Query: 165 GHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC 182
           GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Sbjct: 124 GHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164

[Close]

BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot
Match: P36627 (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=byr3 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-22
Identity = 63/189 (33.33%), Postives = 80/189 (42.33%), Query Frame = 0


Query: 66  CHNCGLPGHIASECTTKSLCWNCREPGHMASSC---PNEGICHTCGKAGHRARDCTAPPL 125
           C+NCG  GH A ECT  S+C+NC + GH AS C     E  C+ CG AGH  RDC + P 
Sbjct: 19  CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPN 78

Query: 126 PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCP 185
           P      C  C + GHIA DC      +  R  GH      ++  C  C   GH AR C 
Sbjct: 79  PRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGH-----RSNMNCYACGSYGHQARDCT 138

Query: 186 KSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM--GPLMICHNCGGR 245
                                        V C +C ++GH S +C       +C+ C   
Sbjct: 139 MG---------------------------VKCYSCGKIGHRSFECQQASDGQLCYKCNQP 174

Query: 246 GHLAYECPS 250
           GH+A  C S
Sbjct: 199 GHIAVNCTS 174

[Close]

BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot
Match: O42395 (Cellular nucleic acid-binding protein OS=Gallus gallus OX=9031 GN=CNBP PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-22
Identity = 62/169 (36.69%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 45  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTT 104
           N C  C R GH+ARECP                          IC+ CG  GH+A +C  
Sbjct: 4   NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63

Query: 105 K--SLCWNCREPGHMASSC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCY 164
           +    C+NC   GH+A  C       E  C+ CGK GH ARDC        D + C +C 
Sbjct: 64  QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCG 123

Query: 165 KQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC 182
           + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Sbjct: 124 EFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166

[Close]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL
Match: A0A1S3BIU7 (zinc finger protein GIS2 OS=Cucumis melo OX=3656 GN=LOC103490347 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 4.6e-154
Identity = 255/260 (98.08%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGI SGGGS RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFM+RYPRRY
Sbjct: 241 GHLAYECPSGRFMDRYPRRY 260

[Close]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL
Match: A0A0A0K138 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006230 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.3e-153
Identity = 253/260 (97.31%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           P+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGI SGGGS RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFM+R+PRRY
Sbjct: 241 GHLAYECPSGRFMDRFPRRY 260

[Close]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL
Match: A0A6J1C2F8 (zinc finger protein GIS2 OS=Momordica charantia OX=3673 GN=LOC111007845 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 7.4e-152
Identity = 252/261 (96.55%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPNEGICHTCGKAGHRAR+CTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240
           CPKSN+L DR DRGIGSGGGSVRGG+  GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG
Sbjct: 181 CPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMERYPRRY 261
           RGHLAYECPSGRFMERYPRRY
Sbjct: 241 RGHLAYECPSGRFMERYPRRY 261

[Close]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL
Match: A0A6J1I6P4 (zinc finger protein GIS2-like OS=Cucurbita maxima OX=3661 GN=LOC111470120 PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.6e-151
Identity = 250/260 (96.15%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC NEGICHTCGKAGHRAR+CTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGIGSGGGS+RGG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGIGSGGGSIRGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFMERYPRRY
Sbjct: 241 GHLAYECPSGRFMERYPRRY 260

[Close]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL
Match: A0A6J1EYM8 (zinc finger protein GIS2-like OS=Cucurbita moschata OX=3662 GN=LOC111440407 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.2e-149
Identity = 249/261 (95.40%), Postives = 254/261 (97.32%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC NEGICHTCGKAGHRAR+CTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVR-GGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240
           CPKSNVLG+RGDRGIGSGGGS+R GG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGG
Sbjct: 181 CPKSNVLGERGDRGIGSGGGSIRGGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMERYPRRY 261
           RGHLAYECPSGRFMERYPRRY
Sbjct: 241 RGHLAYECPSGRFMERYPRRY 261

[Close]

BLAST of Lsi11G011310 vs. NCBI nr
Match: XP_038887879.1 (zinc finger protein GIS2 [Benincasa hispida] >XP_038887880.1 zinc finger protein GIS2 [Benincasa hispida] >XP_038887881.1 zinc finger protein GIS2 [Benincasa hispida] >XP_038887882.1 zinc finger protein GIS2 [Benincasa hispida])

HSP 1 Score: 557.8 bits (1436), Expect = 5.1e-155
Identity = 256/260 (98.46%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           P+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGIGSGGGS RGGASGYRDVVCRNCQQLGHMSRDCMGPL+ICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGIGSGGGSGRGGASGYRDVVCRNCQQLGHMSRDCMGPLLICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFM+RYPRRY
Sbjct: 241 GHLAYECPSGRFMDRYPRRY 260

[Close]

BLAST of Lsi11G011310 vs. NCBI nr
Match: XP_008448055.1 (PREDICTED: zinc finger protein GIS2 [Cucumis melo])

HSP 1 Score: 553.5 bits (1425), Expect = 9.6e-154
Identity = 255/260 (98.08%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGI SGGGS RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFM+RYPRRY
Sbjct: 241 GHLAYECPSGRFMDRYPRRY 260

[Close]

BLAST of Lsi11G011310 vs. NCBI nr
Match: XP_004148537.1 (zinc finger protein GIS2 [Cucumis sativus] >KGN43173.1 hypothetical protein Csa_020435 [Cucumis sativus])

HSP 1 Score: 551.2 bits (1419), Expect = 4.8e-153
Identity = 253/260 (97.31%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           P+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PMPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGI SGGGS RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGISSGGGSGRGSGSGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFM+R+PRRY
Sbjct: 241 GHLAYECPSGRFMDRFPRRY 260

[Close]

BLAST of Lsi11G011310 vs. NCBI nr
Match: XP_022136056.1 (zinc finger protein GIS2 [Momordica charantia])

HSP 1 Score: 546.2 bits (1406), Expect = 1.5e-151
Identity = 252/261 (96.55%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFAYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPNEGICHTCGKAGHRAR+CTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMANSCPNEGICHTCGKAGHRARECTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240
           CPKSN+L DR DRGIGSGGGSVRGG+  GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG
Sbjct: 181 CPKSNILSDRVDRGIGSGGGSVRGGSGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGG 240

Query: 241 RGHLAYECPSGRFMERYPRRY 261
           RGHLAYECPSGRFMERYPRRY
Sbjct: 241 RGHLAYECPSGRFMERYPRRY 261

[Close]

BLAST of Lsi11G011310 vs. NCBI nr
Match: XP_022971383.1 (zinc finger protein GIS2-like [Cucurbita maxima])

HSP 1 Score: 545.0 bits (1403), Expect = 3.4e-151
Identity = 250/260 (96.15%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 1   MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60
           MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC
Sbjct: 1   MSSDSRSRSRSRSRSPVARKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFAREC 60

Query: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 120
           PNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC NEGICHTCGKAGHRAR+CTAP
Sbjct: 61  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHVASSCSNEGICHTCGKAGHRARECTAP 120

Query: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180
           PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ
Sbjct: 121 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 180

Query: 181 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR 240
           CPKSNVLGDRGDRGIGSGGGS+RGG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGGR
Sbjct: 181 CPKSNVLGDRGDRGIGSGGGSIRGGGGGYRDVVCRTCQQLGHMSRDCMSPLMICHNCGGR 240

Query: 241 GHLAYECPSGRFMERYPRRY 261
           GHLAYECPSGRFMERYPRRY
Sbjct: 241 GHLAYECPSGRFMERYPRRY 260

[Close]

BLAST of Lsi11G011310 vs. TAIR 10
Match: AT1G75560.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-94
Identity = 168/263 (63.88%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 3   SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFAREC 62
           S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C
Sbjct: 11  SRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70

Query: 63  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 122
            NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C NEGICH+CGK+GHRARDC+  
Sbjct: 71  SNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNS 130

Query: 123 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 182
               GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR 
Sbjct: 131 DSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARH 190

Query: 183 CPKSNV-LGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNC 242
           CPK +    DRG R     GG  RGG              L  MSRD  G   ++ICHNC
Sbjct: 191 CPKGDSNYSDRGSR--VRDGGMQRGG--------------LSRMSRDREGVSAMIICHNC 250

Query: 243 GGRGHLAYECPSGRFMERYPRRY 261
           GGRGH AYECPS R  +R  RRY
Sbjct: 251 GGRGHRAYECPSARVADRGFRRY 257

[Close]

BLAST of Lsi11G011310 vs. TAIR 10
Match: AT1G75560.2 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-94
Identity = 168/263 (63.88%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 3   SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFAREC 62
           S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C
Sbjct: 11  SRSRSRDRFRSRSPRDRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70

Query: 63  PNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAP 122
            NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C NEGICH+CGK+GHRARDC+  
Sbjct: 71  SNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNS 130

Query: 123 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 182
               GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR 
Sbjct: 131 DSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARH 190

Query: 183 CPKSNV-LGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNC 242
           CPK +    DRG R     GG  RGG              L  MSRD  G   ++ICHNC
Sbjct: 191 CPKGDSNYSDRGSR--VRDGGMQRGG--------------LSRMSRDREGVSAMIICHNC 250

Query: 243 GGRGHLAYECPSGRFMERYPRRY 261
           GGRGH AYECPS R  +R  RRY
Sbjct: 251 GGRGHRAYECPSARVADRGFRRY 257

[Close]

BLAST of Lsi11G011310 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-20
Identity = 72/234 (30.77%), Postives = 91/234 (38.89%), Query Frame = 0


Query: 45  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREP 104
           +L K     G+ AR     + C+NCG  GHI+ +C                  C+NC + 
Sbjct: 81  SLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDT 140

Query: 105 GHMASSCPNEGI-------------CHTCGKAGHRARDCTAPPLPPGDLR--------LC 164
           GH A  C + G              C+TCG  GH ARDCT   +  GD R         C
Sbjct: 141 GHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGC 200

Query: 165 NNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNV 224
             C   GH A DCT + A             C +C   GH+ARDC         C  C  
Sbjct: 201 YTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGG 260

Query: 225 SGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDC 228
           SGH+AR C +            GSGGG          D  C  C + GH +R+C
Sbjct: 261 SGHLARDCDQR-----------GSGGGG--------NDNACYKCGKEGHFAREC 295

[Close]

BLAST of Lsi11G011310 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-16
Identity = 64/195 (32.82%), Postives = 82/195 (42.05%), Query Frame = 0


Query: 66  CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTA-----P 125
           C NCG  GH+A +C   S   +    G   S    EG C+ CG  GH ARDC        
Sbjct: 96  CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSG--GEGECYMCGDVGHFARDCRQSGGGNS 155

Query: 126 PLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQ 185
               G  R C +C + GH+A DC      N  R  G   R    D  C +C   GH AR 
Sbjct: 156 GGGGGGGRPCYSCGEVGHLAKDCRGGSGGN--RYGGGGGRGSGGDG-CYMCGGVGHFARD 215

Query: 186 CPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPL--------M 245
           C +             +GGG+V GG S      C  C  +GH+++ C   +         
Sbjct: 216 CRQ-------------NGGGNVGGGGS-----TCYTCGGVGHIAKVCTSKIPSGGGGGGR 267

Query: 246 ICHNCGGRGHLAYEC 248
            C+ CGG GHLA +C
Sbjct: 276 ACYECGGTGHLARDC 267

[Close]

BLAST of Lsi11G011310 vs. TAIR 10
Match: AT3G43590.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-13
Identity = 58/221 (26.24%), Postives = 81/221 (36.65%), Query Frame = 0


Query: 66  CHNCGLPGHIASECTT----KSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPP 125
           C++CG  GH +  C T    +  C+ C    H A  C     C+ C K GHRA+DC    
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKY 227

Query: 126 LPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCRKTGHLARDCPNDPI-----C 185
                  +C  C   GH    C  E +        C  C+  GHL    P + +     C
Sbjct: 228 KNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSC 287

Query: 186 NLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM 245
             C   GH    C +     +  D        + R  +  YR      C + GH +R+C 
Sbjct: 288 YRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYR------CGEEGHFARECP 347

Query: 246 GPLMI-----------CHNCGGRGHLAYECPSGRFMERYPR 259
               I           C+ C G GH A ECP+   + +  R
Sbjct: 348 NSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVSKRDR 382

The following BLAST results are available for this feature:

BLAST of Lsi11G011310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04832	9.0e-30	30.29	DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1	[more]
P53849	8.7e-25	35.57	Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	[more]
Q3T0Q6	3.1e-22	37.13	Cellular nucleic acid-binding protein OS=Bos taurus OX=9913 GN=CNBP PE=2 SV=1	[more]
P36627	6.9e-22	33.33	Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (stra...	[more]
O42395	6.9e-22	36.69	Cellular nucleic acid-binding protein OS=Gallus gallus OX=9031 GN=CNBP PE=2 SV=1	[more]

BLAST of Lsi11G011310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIU7	4.6e-154	98.08	zinc finger protein GIS2 OS=Cucumis melo OX=3656 GN=LOC103490347 PE=4 SV=1	[more]
A0A0A0K138	2.3e-153	97.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006230 PE=4 SV=1	[more]
A0A6J1C2F8	7.4e-152	96.55	zinc finger protein GIS2 OS=Momordica charantia OX=3673 GN=LOC111007845 PE=4 SV=...	[more]
A0A6J1I6P4	1.6e-151	96.15	zinc finger protein GIS2-like OS=Cucurbita maxima OX=3661 GN=LOC111470120 PE=4 S...	[more]
A0A6J1EYM8	1.2e-149	95.40	zinc finger protein GIS2-like OS=Cucurbita moschata OX=3662 GN=LOC111440407 PE=4...	[more]

BLAST of Lsi11G011310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887879.1	5.1e-155	98.46	zinc finger protein GIS2 [Benincasa hispida] >XP_038887880.1 zinc finger protein...	[more]
XP_008448055.1	9.6e-154	98.08	PREDICTED: zinc finger protein GIS2 [Cucumis melo]	[more]
XP_004148537.1	4.8e-153	97.31	zinc finger protein GIS2 [Cucumis sativus] >KGN43173.1 hypothetical protein Csa_...	[more]
XP_022136056.1	1.5e-151	96.55	zinc finger protein GIS2 [Momordica charantia]	[more]
XP_022971383.1	3.4e-151	96.15	zinc finger protein GIS2-like [Cucurbita maxima]	[more]

BLAST of Lsi11G011310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75560.1	5.3e-94	63.88	zinc knuckle (CCHC-type) family protein	[more]
AT1G75560.2	5.3e-94	63.88	zinc knuckle (CCHC-type) family protein	[more]
AT4G36020.1	8.7e-20	30.77	cold shock domain protein 1	[more]
AT2G17870.1	2.6e-16	32.82	cold shock domain protein 3	[more]
AT3G43590.1	2.1e-13	26.24	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 233..249 e-value: 0.001 score: 28.3 coord: 65..81 e-value: 0.0017 score: 27.6 coord: 46..62 e-value: 4.7E-4 score: 29.5 coord: 103..119 e-value: 0.0015 score: 27.8 coord: 167..183 e-value: 0.02 score: 21.7 coord: 129..145 e-value: 0.0078 score: 24.2 coord: 213..229 e-value: 0.0056 score: 25.1 coord: 148..164 e-value: 1.4E-4 score: 31.2 coord: 84..100 e-value: 1.8E-4 score: 30.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 148..164 e-value: 3.0E-6 score: 27.1 coord: 66..80 e-value: 2.3E-5 score: 24.2 coord: 46..62 e-value: 3.1E-6 score: 27.0 coord: 233..249 e-value: 1.7E-5 score: 24.7 coord: 213..227 e-value: 7.9E-7 score: 28.9 coord: 85..100 e-value: 8.1E-6 score: 25.7 coord: 167..183 e-value: 0.0017 score: 18.4 coord: 129..145 e-value: 0.0034 score: 17.4 coord: 103..118 e-value: 1.0E-5 score: 25.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 66..79 score: 9.504374
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 214..227 score: 9.141752
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 168..183 score: 8.614303
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 104..117 score: 10.114237
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 234..249 score: 9.834029
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 85..100 score: 9.916444
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 149..164 score: 10.01534
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 130..145 score: 8.795613
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 47..62 score: 9.850513
None	No IPR available	GENE3D	4.10.60.10		coord: 102..146 e-value: 4.5E-11 score: 44.3 coord: 147..197 e-value: 6.1E-12 score: 47.1
None	No IPR available	GENE3D	4.10.60.10		coord: 23..81 e-value: 1.8E-12 score: 48.9
None	No IPR available	GENE3D	4.10.60.10		coord: 82..101 e-value: 2.2E-5 score: 26.0
None	No IPR available	GENE3D	4.10.60.10		coord: 207..251 e-value: 5.5E-11 score: 44.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR47103:SF6	OS10G0545300 PROTEIN	coord: 1..260
None	No IPR available	PANTHER	PTHR47103	FAMILY NOT NAMED	coord: 1..260
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 83..120
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 206..251
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 125..165
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 38..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011310.1	Lsi11G011310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding