Lsi11G011220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G011220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionlate embryogenesis abundant protein-like
Locationchr11: 19658787 .. 19661161 (+)
RNA-Seq ExpressionLsi11G011220
SyntenyLsi11G011220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGGTGAGTCCAACTTTTTGGATTATAATTTGTCGTTTGACTTCATATCCTCTCTCGGTTTCTTTTTAATTCTTTCGATTTTCATTTTATTCTGGTGTTTGCTCAATCATTTTTTATTTTTTTTACATTAAAGAATGAAGGTGAAGAAATCGATTCATACCCTTGAAGTTAGCAAGGTTTATTATCAATTCTAAACTTAAAACTTCCAATTTTGTTCTCAGGTTTTGATTCAAATGTTGCAAAGTTTACACTGAACTTGTGATGATAGTGTTGCCATATTTATGTGAAATTTGAATAGGGGTTATATATTTGCTATGAACTTGATTGATTTTGTTTATTTATTTGTCTTTTGGTCGAGGACTCCAGAGTATGCGATTTGGTTGGGAATTTTTTTTAATTTGGAAGATTAATTCGACAATTGATTTTATATATCGATCCAGATTTTTTAAAATGTGAAGCTTGATTTTTGAAATTTTAGTGAGTTCATGAAGTCTTTTTTGTAGTTGAACATAACATTTGGGATGAGGTTTGAATTTATGGTTTAAATAACCATTGACAAGTTTTTGTTTGTTTTGTGTTTTGTGTTTTTTATTTTTTTCATAAGAATTGCTAGGAAGAGCATGGTTCAAGTGGCATCCAATATGTAGGATAACTTCATATTAGATAACTTCGAGGCCCATAATTGTAAAAACAAAAAAAAAAAAAAACAAAACAAAAACGACTGTCAATAATATTTATGGCTTTTCTATTTTAAGGTCAATTTGTATGAAAAATTTTAAGGTCTATTTTAAGGTCAATGGAAAAGATTTGAATGAAAATATGTTGTTTCTTAATGGTAAAAGAGAGACAAAATTTCATTGAACTAGCAATGGATCAAAAAAATTATAAAAAAAAAAAAAAGAAAAAAACATGAAATCTTCAAATTTTTTCGAAAATTGAAATTTTGATGGAAATTTCAAGAAATTATTAATTATGGTTGCAAGGTTGGATTGTTCTAAATCTCTAACTCTAGGGGTTTATATATATAAACTAGTTGAGCCAAGTTGGTCATCACAATAAGTATTTTGACTTTTTTAGTCCTTAATATTTGGGAGAAATAAGATTTCTAAGCCTATTTTTTTCTTCTATTATTTGAATCATTGTAGAAAAATTGTATTAAATAAAAAGTATCTTGACCTGCTTCGGATGAGAGTTCATATTTAATCTTATTTGAACTTCAAGACGTCTTGCTTTCGGACTTTGACATTTTAACCCAAAAAAAAAAAAATCAAAGCCAAAATATAAATAAATAATAAATAAACCAAAAGAAGGAAGTGATCTTTATTTCTTAAAGGAAGAACATATGGTCTTATTACTTTAGGCTATAAATTTTAGTGAATTAATTTGTCAATTAGTATTTAGGATATAATCATATAGTTTTCTTAGCATTTAAGTACCTAAGTTCTAATAAATGAGATGATTTGTTAAAATGAGCATAATTCAACTAGCACAAAAGGTTTTATTGTCGATTTTAACGTTAGAAGTCTAAATTCAATATCATTTGTAGATGAATTTGTTAGTTATCGTAAATTTGTTTAATCTTGCATCATTTTCAGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA

mRNA sequence

ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA

Coding sequence (CDS)

ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGA

Protein sequence

MGEIRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAPPTTSQKIHRGEI
Homology
BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: Q96261 (Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVV-LTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +       S   DI     + 
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDI----AEH 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASS-GGGYGDGEQALQPHEEDEDGGS 128
               VG T                 G G A+ A A+    G G      Q H     G  
Sbjct: 61  PTSTVGET----------HPAAAPAGAGAATAATATGVSAGTGATTTGQQHH-----GSL 120

Query: 129 SAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
             H+ RS +S SSSS+++ Q GRR    KK + +KI+EK   GKHK+E    TP T TT 
Sbjct: 121 EEHLRRSGSSSSSSSEDDGQGGRR----KKSIKEKIKEKFGSGKHKDEQ---TPATATT- 161

Query: 189 IETAPPTTSQ 196
             T P TT Q
Sbjct: 181 --TGPATTDQ 161

BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: Q07322 (Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.8e-13
Identity = 89/278 (32.01%), Postives = 109/278 (39.21%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGG----- 68
           MAD+RDE GNPI+LTD+HGNPV LTDE+GNP+ +TGVAT  G T G     +GG      
Sbjct: 1   MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVAT-TGATTGHHDHGVGGASHGGV 60

Query: 69  ----------------------------GGDGGH------------------------GK 128
                                       GG G H                        G 
Sbjct: 61  GSTGLGGVAGAAGLAGATAAAATHGGSHGGTGTHGVGPTGVGAAHGGTGTTTGLGTGTGT 120

Query: 129 VGPTLGSLMFGCGGSGGVKDGG--------------HGCASDAKASSGGGYGDGEQALQP 188
            G T G    G GG+ GV   G              HG       ++ GG G G+  L  
Sbjct: 121 TGQTHGMGPTGIGGTHGVGSTGIGGAHGGTGVLGQTHGMGPTGTGAAHGGLGTGQSGLGS 180

Query: 189 HEEDEDG--------------GSSAH-----------VRSTTSGSSSSDEEVQSGRRTTK 191
                 G              GS +H           +  + S SSSS+++ Q GRR   
Sbjct: 181 SYATHGGLGTGIGTGSAPASAGSHSHAPEKKTALGEQLHRSNSSSSSSEDDGQGGRR--- 240

BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: P21298 (Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.6e-12
Identity = 70/187 (37.43%), Postives = 93/187 (49.73%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD++DE GNPI LTD +GNPV L+DE GNPM +TGVA+       S+       G    
Sbjct: 1   MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVASSAPQYKDSVT------GNIAE 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
           +    P  G       G+G            A A++  G    E       ++  G    
Sbjct: 61  YPTEAPPAGV----AAGTG------------AAATTAAGVTTSETTT---GQEHHGSLGE 120

Query: 129 HV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIE 188
           H+ RS +S SSSS+++ Q GRR    KK +  KI++KL GGKHK+E       T TTA  
Sbjct: 121 HLRRSGSSSSSSSEDDGQGGRR----KKSIKDKIKDKLGGGKHKDE------QTPTTATT 152

Query: 189 TAPPTTS 195
           T P TT+
Sbjct: 181 TGPTTTT 152

BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.6e-05
Identity = 58/163 (35.58%), Postives = 79/163 (48.47%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLT-DEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MA  ++  G   + TD++GNP+    DE+GNPM   G  T               GGG G
Sbjct: 1   MASYQNRPGG--QATDEYGNPIQQQYDEYGNPMGGGGYGT---------------GGGGG 60

Query: 69  GHGKVGPTLGSLMFGCGGSG---GVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDG 128
             G  G   G   +G GG G   G +  G G  ++   + GG    G++ L  H+E   G
Sbjct: 61  ATGGQGYGTGGQGYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQL--HKESGGG 120

Query: 129 GSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRG 168
                 RS +  SSSS+++ Q GRR    KKG+TQKI+EKL G
Sbjct: 121 LGGMLHRSGSGSSSSSEDDGQGGRR----KKGITQKIKEKLPG 140

BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1GNP3 (late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455607 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 7.0e-41
Identity = 109/191 (57.07%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 13  RDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKV 72
           +DE+GNPI+L D+HGNPVVLTDEHGNP+RL+G+ATK G TLGSL+F              
Sbjct: 16  QDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIF-------------- 75

Query: 73  GPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRS 132
                       GSG    GGHG A DA+ SSGGG GDGEQ L P  E EDGGS  HV S
Sbjct: 76  ------------GSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGS 135

Query: 133 TTSGSSSSDEEVQSGRR--TTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAP 192
            TSGSS S+EE QS +R    KKKKGL QKI+EKL GGKH+EE    + P TTTA  TA 
Sbjct: 136 ATSGSSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTAS 180

Query: 193 PTTSQKIHRGE 202
           P T+ KIH GE
Sbjct: 196 PITTNKIHYGE 180

BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1IJR5 (late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111474289 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35
Identity = 102/171 (59.65%), Postives = 112/171 (65.50%), Query Frame = 0

Query: 13  RDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKV 72
           +DE+GNPI+ TD+HGNPVVLTDEHGNP+R  GVATK G TLGSL+F              
Sbjct: 16  QDEYGNPIQPTDEHGNPVVLTDEHGNPVRFFGVATKVGTTLGSLIF-------------- 75

Query: 73  GPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRS 132
                       GSGG   GGHG  SDAK SSGGG G  EQ L P EE+EDGGS  HV S
Sbjct: 76  ------------GSGGEDGGGHGGDSDAKGSSGGGNGVREQELMPVEENEDGGSGTHVGS 135

Query: 133 TTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEE-PLHFTPPTT 183
            TSGSS S+EE QS +R   KKKGLTQKI+EKL GGKHKEE P    PPTT
Sbjct: 136 ATSGSSPSEEEQQSEKR---KKKGLTQKIKEKLTGGKHKEEQPQPSFPPTT 157

BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1C1Y9 (late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111007717 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 103/214 (48.13%), Postives = 117/214 (54.67%), Query Frame = 0

Query: 8   KMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 67
           KMADIRDEHGNPI LTD+ GNPVVLTDEHGNPMRLTGVATK GPTLGSL+          
Sbjct: 4   KMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLL---------- 63

Query: 68  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 127
                          C G    +D G            GG+GDGEQ L PHE  +DGG  
Sbjct: 64  ---------------CSG----RDDG----------PSGGHGDGEQELLPHEGHDDGG-- 123

Query: 128 AHVRSTTSGSSSSDEEVQSG-------------------------RRTTKKKKGLTQKIR 187
             VRSTTSGSSS DEE +                           ++ ++KKKG TQKI+
Sbjct: 124 -RVRSTTSGSSSFDEEEEQSKMRKKEKKKDECYFSQFDEGDEKKRKKKSEKKKGFTQKIK 175

Query: 188 EKLRGGKHKEEPLHFTPPTTTTAIETAPPTTSQK 197
           EKL G +HKEE  H   P TTTA ETA PT+  +
Sbjct: 184 EKLTGRRHKEEQPHTPHPQTTTATETAAPTSMDR 175

BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: V9M5C3 (Dehydrin protein OS=Manihot esculenta OX=3983 GN=LTI30 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.7e-21
Identity = 82/176 (46.59%), Postives = 102/176 (57.95%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGG 68
           MAD+RDE+GNPI+LTD+HGNPV LTDEHGNP+ +TGVAT   PTLG+LM           
Sbjct: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLM----------- 60

Query: 69  HGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSA 128
             +V P  G L      S G      G A D +      +   E   QP  +++ G    
Sbjct: 61  ENEV-PATGLL----ASSNGTDHTSKGHAGDEE-----NHRKEEPQPQPQPQEQQGSGEI 120

Query: 129 HVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTT 185
             RS+TS SSSS+++ Q GRR   KKKGL +KI+EKL GGKHKEE  H    +T T
Sbjct: 121 E-RSSTSSSSSSEDDGQGGRR---KKKGLREKIKEKLTGGKHKEEQRHKASVSTET 151

BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: F6I0M9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0038g04390 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 85/188 (45.21%), Postives = 99/188 (52.66%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVA-TKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDEHGNPI+LTD+HGNPV LTDEHGNPM LTGVA T P  T  + + D        
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAPVHDADA----- 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSS 128
                            G       GHG A  A       +G    A +P    E GG  
Sbjct: 61  -------------LKTTGESHPPTSGHGIADQAV------HGGAPVAAEP---AEGGGGE 120

Query: 129 AH--VRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
            H   R ++S SSSS+++ Q GRR    KKGL +KI+EKL GGKHKEE  H   PTT  A
Sbjct: 121 VHHEKRESSSSSSSSEDDGQGGRR----KKGLKEKIKEKLTGGKHKEEQGH--APTTGVA 155

Query: 189 IETAPPTT 194
           I T   TT
Sbjct: 181 ITTTTTTT 155

BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_038887694.1 (late embryogenesis abundant protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-49
Identity = 119/181 (65.75%), Postives = 132/181 (72.93%), Query Frame = 0

Query: 4   IRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGG 63
           ++MAKMADIRDEHGNPIRLTD+ GNPV+LTDEHGNPM LTGVATK G TLGSLMF     
Sbjct: 1   MKMAKMADIRDEHGNPIRLTDEQGNPVLLTDEHGNPMWLTGVATKVGTTLGSLMF----- 60

Query: 64  GGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDED 123
                                G GG +DGGHGCASDA+ASSGGGYGD EQ L PHEEDED
Sbjct: 61  ---------------------GGGGSRDGGHGCASDAQASSGGGYGDVEQVLPPHEEDED 120

Query: 124 GGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTT 183
           GGS+ HVRST+SGSS S+EE    +   KKKKGLTQKI+EKLRGGKHKEE  + +P  TT
Sbjct: 121 GGSTVHVRSTSSGSSLSEEEQNERKGEKKKKKGLTQKIKEKLRGGKHKEEQPYASPLPTT 155

Query: 184 T 185
           T
Sbjct: 181 T 155

BLAST of Lsi11G011220 vs. NCBI nr
Match: KAG7011719.1 (Embryogenic cell protein 40 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 3.6e-47
Identity = 119/201 (59.20%), Postives = 135/201 (67.16%), Query Frame = 0

Query: 1   MGEIRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDI 60
           M  +RMAKMADI+DE+GNPI+LTD+HGNPVVLTDEHGNP+RL+GVATK G TLGSL+F  
Sbjct: 1   MEGMRMAKMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIF-- 60

Query: 61  GGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEE 120
                                   GSG    GGHG A DA+ SSGGG GDGEQ L P  E
Sbjct: 61  ------------------------GSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVE 120

Query: 121 DEDGGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPP 180
            EDGGS  HV S TSGSS S+EE QS ++  KKKKGLTQKI+EKL GGKH+EE    + P
Sbjct: 121 HEDGGSGTHVGSATSGSSPSEEEEQSEKKKKKKKKGLTQKIKEKLTGGKHREEQPQASSP 175

Query: 181 TTTTAIETAPPTTSQKIHRGE 202
            TT A  TA P T+ KIH GE
Sbjct: 181 PTTAATITAAPITTNKIHHGE 175

BLAST of Lsi11G011220 vs. NCBI nr
Match: KAG6572053.1 (Embryogenic cell protein 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-44
Identity = 117/201 (58.21%), Postives = 132/201 (65.67%), Query Frame = 0

Query: 1   MGEIRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDI 60
           M  +RMAKMADI+DE+GNPI+LTD+HGNPVVLTDEHGNP+RL+GVATK G TLGSL+F  
Sbjct: 1   MEGMRMAKMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIF-- 60

Query: 61  GGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEE 120
                                   GSG    GGHG A DA+ SSGGG GDGEQ L P  E
Sbjct: 61  ------------------------GSGDEDGGGHGSACDAEGSSGGGNGDGEQELMP--E 120

Query: 121 DEDGGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPP 180
            EDGGS  HV S TSGSS S+EE     +  KKKKGLTQKI+EKL GGKH+EE    + P
Sbjct: 121 HEDGGSGTHVGSATSGSSPSEEE--QSEKKKKKKKGLTQKIKEKLTGGKHREEQPQASSP 171

Query: 181 TTTTAIETAPPTTSQKIHRGE 202
            TT A  TA P T+ KIH GE
Sbjct: 181 PTTAATTTAAPITTNKIHHGE 171

BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_023511710.1 (late embryogenesis abundant protein-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511711.1 late embryogenesis abundant protein-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511712.1 late embryogenesis abundant protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-43
Identity = 114/189 (60.32%), Postives = 126/189 (66.67%), Query Frame = 0

Query: 13  RDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKV 72
           +DE+GNPI+LTD+HGNPVVLTDEHGNP+RL+GVATK G TLGSL+F              
Sbjct: 16  QDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIF-------------- 75

Query: 73  GPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRS 132
                       GSGG   G HG ASDAK SSGGG GDGEQ L P EE EDGGS  HV S
Sbjct: 76  ------------GSGGEDGGDHGSASDAKGSSGGGNGDGEQELMPVEEHEDGGSGTHVGS 135

Query: 133 TTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAPPT 192
            TSGSS S+EE QSG+   KKKKGLTQKI+EKL GGKHKEE    + P TT A  T  P 
Sbjct: 136 ATSGSSPSEEEGQSGK---KKKKGLTQKIKEKLTGGKHKEEQSQPSSPPTTAATTTTSPI 175

Query: 193 TSQKIHRGE 202
           T+ KIH GE
Sbjct: 196 TTNKIHHGE 175

BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_022953104.1 (late embryogenesis abundant protein-like [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-40
Identity = 109/191 (57.07%), Postives = 124/191 (64.92%), Query Frame = 0

Query: 13  RDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKV 72
           +DE+GNPI+L D+HGNPVVLTDEHGNP+RL+G+ATK G TLGSL+F              
Sbjct: 16  QDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIF-------------- 75

Query: 73  GPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRS 132
                       GSG    GGHG A DA+ SSGGG GDGEQ L P  E EDGGS  HV S
Sbjct: 76  ------------GSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGS 135

Query: 133 TTSGSSSSDEEVQSGRR--TTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAP 192
            TSGSS S+EE QS +R    KKKKGL QKI+EKL GGKH+EE    + P TTTA  TA 
Sbjct: 136 ATSGSSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTAS 180

Query: 193 PTTSQKIHRGE 202
           P T+ KIH GE
Sbjct: 196 PITTNKIHYGE 180

BLAST of Lsi11G011220 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-15
Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVV-LTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +       S   DI     + 
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDI----AEH 60

Query: 69  GHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASS-GGGYGDGEQALQPHEEDEDGGS 128
               VG T                 G G A+ A A+    G G      Q H     G  
Sbjct: 61  PTSTVGET----------HPAAAPAGAGAATAATATGVSAGTGATTTGQQHH-----GSL 120

Query: 129 SAHV-RSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTA 188
             H+ RS +S SSSS+++ Q GRR    KK + +KI+EK   GKHK+E    TP T TT 
Sbjct: 121 EEHLRRSGSSSSSSSEDDGQGGRR----KKSIKEKIKEKFGSGKHKDEQ---TPATATT- 161

Query: 189 IETAPPTTSQ 196
             T P TT Q
Sbjct: 181 --TGPATTDQ 161

BLAST of Lsi11G011220 vs. TAIR 10
Match: AT4G39130.1 (Dehydrin family protein )

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-09
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 9  MADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVAT 48
          MAD++DE GNPI LTD HG P  L DE GN M LTGVAT
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVAT 39

BLAST of Lsi11G011220 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLT-DEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MA  ++  G   + TD++GNP+    DE+GNPM   G  T               GGG G
Sbjct: 1   MASYQNRPGG--QATDEYGNPIQQQYDEYGNPMGGGGYGT---------------GGGGG 60

Query: 69  GHGKVGPTLGSLMFGCGGSG---GVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDG 128
             G  G   G   +G GG G   G +  G G  ++   + GG    G++ L    ++  G
Sbjct: 61  ATGGQGYGTGGQGYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQL---HKESGG 120

Query: 129 GSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRG 168
           G    +  + SGSSSS ++ Q GRR    KKG+TQKI+EKL G
Sbjct: 121 GLGGMLHRSGSGSSSSSDDGQGGRR----KKGITQKIKEKLPG 139

BLAST of Lsi11G011220 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 58/163 (35.58%), Postives = 79/163 (48.47%), Query Frame = 0

Query: 9   MADIRDEHGNPIRLTDKHGNPVVLT-DEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDG 68
           MA  ++  G   + TD++GNP+    DE+GNPM   G  T               GGG G
Sbjct: 1   MASYQNRPGG--QATDEYGNPIQQQYDEYGNPMGGGGYGT---------------GGGGG 60

Query: 69  GHGKVGPTLGSLMFGCGGSG---GVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDG 128
             G  G   G   +G GG G   G +  G G  ++   + GG    G++ L  H+E   G
Sbjct: 61  ATGGQGYGTGGQGYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQL--HKESGGG 120

Query: 129 GSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRG 168
                 RS +  SSSS+++ Q GRR    KKG+TQKI+EKL G
Sbjct: 121 LGGMLHRSGSGSSSSSEDDGQGGRR----KKGITQKIKEKLPG 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q962611.2e-1341.58Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1[more]
Q073227.8e-1332.01Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1[more]
P212988.6e-1237.43Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1[more]
P301854.6e-0535.58Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1GNP37.0e-4157.07late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IJR57.5e-3559.65late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1C1Y92.3e-3148.13late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
V9M5C34.7e-2146.59Dehydrin protein OS=Manihot esculenta OX=3983 GN=LTI30 PE=2 SV=1[more]
F6I0M91.3e-1845.21Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0038g04390 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
XP_038887694.11.0e-4965.75late embryogenesis abundant protein-like isoform X1 [Benincasa hispida][more]
KAG7011719.13.6e-4759.20Embryogenic cell protein 40 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6572053.12.8e-4458.21Embryogenic cell protein 40, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023511710.11.4e-4360.32late embryogenesis abundant protein-like isoform X1 [Cucurbita pepo subsp. pepo]... [more]
XP_022953104.11.4e-4057.07late embryogenesis abundant protein-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G21490.18.5e-1541.58dehydrin LEA [more]
AT4G39130.15.4e-0969.23Dehydrin family protein [more]
AT5G66400.21.5e-0634.97Dehydrin family protein [more]
AT5G66400.13.3e-0635.58Dehydrin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000167DehydrinPFAMPF00257Dehydrincoord: 31..192
e-value: 4.7E-18
score: 66.2
IPR000167DehydrinPANTHERPTHR33346DEHYDRIN XERO 2-RELATEDcoord: 9..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..195
NoneNo IPR availablePANTHERPTHR33346:SF5DEHYDRIN XERO 2-RELATEDcoord: 9..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G011220.1Lsi11G011220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009415 response to water