Lsi11G011220 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGGTGAGTCCAACTTTTTGGATTATAATTTGTCGTTTGACTTCATATCCTCTCTCGGTTTCTTTTTAATTCTTTCGATTTTCATTTTATTCTGGTGTTTGCTCAATCATTTTTTATTTTTTTTACATTAAAGAATGAAGGTGAAGAAATCGATTCATACCCTTGAAGTTAGCAAGGTTTATTATCAATTCTAAACTTAAAACTTCCAATTTTGTTCTCAGGTTTTGATTCAAATGTTGCAAAGTTTACACTGAACTTGTGATGATAGTGTTGCCATATTTATGTGAAATTTGAATAGGGGTTATATATTTGCTATGAACTTGATTGATTTTGTTTATTTATTTGTCTTTTGGTCGAGGACTCCAGAGTATGCGATTTGGTTGGGAATTTTTTTTAATTTGGAAGATTAATTCGACAATTGATTTTATATATCGATCCAGATTTTTTAAAATGTGAAGCTTGATTTTTGAAATTTTAGTGAGTTCATGAAGTCTTTTTTGTAGTTGAACATAACATTTGGGATGAGGTTTGAATTTATGGTTTAAATAACCATTGACAAGTTTTTGTTTGTTTTGTGTTTTGTGTTTTTTATTTTTTTCATAAGAATTGCTAGGAAGAGCATGGTTCAAGTGGCATCCAATATGTAGGATAACTTCATATTAGATAACTTCGAGGCCCATAATTGTAAAAACAAAAAAAAAAAAAAACAAAACAAAAACGACTGTCAATAATATTTATGGCTTTTCTATTTTAAGGTCAATTTGTATGAAAAATTTTAAGGTCTATTTTAAGGTCAATGGAAAAGATTTGAATGAAAATATGTTGTTTCTTAATGGTAAAAGAGAGACAAAATTTCATTGAACTAGCAATGGATCAAAAAAATTATAAAAAAAAAAAAAAGAAAAAAACATGAAATCTTCAAATTTTTTCGAAAATTGAAATTTTGATGGAAATTTCAAGAAATTATTAATTATGGTTGCAAGGTTGGATTGTTCTAAATCTCTAACTCTAGGGGTTTATATATATAAACTAGTTGAGCCAAGTTGGTCATCACAATAAGTATTTTGACTTTTTTAGTCCTTAATATTTGGGAGAAATAAGATTTCTAAGCCTATTTTTTTCTTCTATTATTTGAATCATTGTAGAAAAATTGTATTAAATAAAAAGTATCTTGACCTGCTTCGGATGAGAGTTCATATTTAATCTTATTTGAACTTCAAGACGTCTTGCTTTCGGACTTTGACATTTTAACCCAAAAAAAAAAAAATCAAAGCCAAAATATAAATAAATAATAAATAAACCAAAAGAAGGAAGTGATCTTTATTTCTTAAAGGAAGAACATATGGTCTTATTACTTTAGGCTATAAATTTTAGTGAATTAATTTGTCAATTAGTATTTAGGATATAATCATATAGTTTTCTTAGCATTTAAGTACCTAAGTTCTAATAAATGAGATGATTTGTTAAAATGAGCATAATTCAACTAGCACAAAAGGTTTTATTGTCGATTTTAACGTTAGAAGTCTAAATTCAATATCATTTGTAGATGAATTTGTTAGTTATCGTAAATTTGTTTAATCTTGCATCATTTTCAGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGATTATAATAATGTGTGAACTTGAGTTTATCTTTTAGTATTAGTTTTTGGTTAATGTACTTGGAGACTTGCTTTTGTAATGTCTATTTTAGAAGACTTCATTATATATATAAAAAAAAGTTGGTTTGAATTTTGCCATTTGTTTCTAAAGTATTCATATTCTTTTTATAAATTATA ATGGGAGAGATAAGAATGGCGAAAATGGCTGATATACGGGACGAGCATGGCAACCCCATCCGACTCACCGACAAGCATGGCAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGAGGCTCACTGGTGTCGCAACCAAGCCTGGCCCGACACTCGGGTCACTGATGTTTGACATTGGTGGTGGTGGTGGGGATGGTGGCCATGGCAAGGTCGGCCCGACGCTTGGGTCACTGATGTTTGGCTGTGGTGGTAGTGGTGGTGTTAAGGATGGTGGCCATGGCTGTGCTTCTGATGCTAAAGCTAGTTCAGGTGGTGGCTATGGCGACGGTGAGCAGGCGCTGCAGCCGCATGAGGAGGATGAAGATGGTGGCTCTAGCGCCCATGTTCGCTCTACCACTTCAGGCTCTAGTTCGTCGGATGAAGAAGTACAAAGTGGGAGGAGGACGACGAAGAAGAAGAAAGGATTGACCCAGAAAATAAGAGAGAAACTAAGAGGAGGGAAGCATAAAGAGGAGCCACTTCACTTTACTCCTCCGACCACCACCACGGCTATCGAAACCGCCCCTCCGACCACCTCACAAAAGATTCACCGGGGAGAAATTTGA MGEIRMAKMADIRDEHGNPIRLTDKHGNPVVLTDEHGNPMRLTGVATKPGPTLGSLMFDIGGGGGDGGHGKVGPTLGSLMFGCGGSGGVKDGGHGCASDAKASSGGGYGDGEQALQPHEEDEDGGSSAHVRSTTSGSSSSDEEVQSGRRTTKKKKGLTQKIREKLRGGKHKEEPLHFTPPTTTTAIETAPPTTSQKIHRGEI Homology
BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: Q96261 (Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13 Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: Q07322 (Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 7.8e-13 Identity = 89/278 (32.01%), Postives = 109/278 (39.21%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: P21298 (Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 8.6e-12 Identity = 70/187 (37.43%), Postives = 93/187 (49.73%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.6e-05 Identity = 58/163 (35.58%), Postives = 79/163 (48.47%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1GNP3 (late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455607 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 7.0e-41 Identity = 109/191 (57.07%), Postives = 124/191 (64.92%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1IJR5 (late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111474289 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35 Identity = 102/171 (59.65%), Postives = 112/171 (65.50%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: A0A6J1C1Y9 (late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111007717 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31 Identity = 103/214 (48.13%), Postives = 117/214 (54.67%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: V9M5C3 (Dehydrin protein OS=Manihot esculenta OX=3983 GN=LTI30 PE=2 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 4.7e-21 Identity = 82/176 (46.59%), Postives = 102/176 (57.95%), Query Frame = 0
BLAST of Lsi11G011220 vs. ExPASy TrEMBL
Match: F6I0M9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0038g04390 PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18 Identity = 85/188 (45.21%), Postives = 99/188 (52.66%), Query Frame = 0
BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_038887694.1 (late embryogenesis abundant protein-like isoform X1 [Benincasa hispida]) HSP 1 Score: 207.6 bits (527), Expect = 1.0e-49 Identity = 119/181 (65.75%), Postives = 132/181 (72.93%), Query Frame = 0
BLAST of Lsi11G011220 vs. NCBI nr
Match: KAG7011719.1 (Embryogenic cell protein 40 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 199.1 bits (505), Expect = 3.6e-47 Identity = 119/201 (59.20%), Postives = 135/201 (67.16%), Query Frame = 0
BLAST of Lsi11G011220 vs. NCBI nr
Match: KAG6572053.1 (Embryogenic cell protein 40, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 189.5 bits (480), Expect = 2.8e-44 Identity = 117/201 (58.21%), Postives = 132/201 (65.67%), Query Frame = 0
BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_023511710.1 (late embryogenesis abundant protein-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511711.1 late embryogenesis abundant protein-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023511712.1 late embryogenesis abundant protein-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 187.2 bits (474), Expect = 1.4e-43 Identity = 114/189 (60.32%), Postives = 126/189 (66.67%), Query Frame = 0
BLAST of Lsi11G011220 vs. NCBI nr
Match: XP_022953104.1 (late embryogenesis abundant protein-like [Cucurbita moschata]) HSP 1 Score: 177.2 bits (448), Expect = 1.4e-40 Identity = 109/191 (57.07%), Postives = 124/191 (64.92%), Query Frame = 0
BLAST of Lsi11G011220 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA ) HSP 1 Score: 78.2 bits (191), Expect = 8.5e-15 Identity = 79/190 (41.58%), Postives = 94/190 (49.47%), Query Frame = 0
BLAST of Lsi11G011220 vs. TAIR 10
Match: AT4G39130.1 (Dehydrin family protein ) HSP 1 Score: 58.9 bits (141), Expect = 5.4e-09 Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0
BLAST of Lsi11G011220 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06 Identity = 57/163 (34.97%), Postives = 79/163 (48.47%), Query Frame = 0
BLAST of Lsi11G011220 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein ) HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06 Identity = 58/163 (35.58%), Postives = 79/163 (48.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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