Lsi11G011150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G011150
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 19545778 .. 19546319 (+)
RNA-Seq ExpressionLsi11G011150
SyntenyLsi11G011150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTATTTGTGGGTCTAAAAGCTTGCTACATTTTCCATAATGAAGTCCAATATGCATGTAAGTTATCTTTAAATGTTTATTCACATAGAAATTAAAAATCTTATATTTATATATAATATCATCTCAATGTTCTATTTTTTAGGATTTGGATAAGCAAAGAACTGAACCAAACAAGGGTAAGAAGTCAAAAAGACCTCGTACTACAATACCGACATTTGAACGACGACAATCTGATCGCACCTTGGTGAAAACGTCTTGGAGATTTGCAAAGTCGTTTAGTATGGACTTAACCAATATGGCCAGTGACGAGGAGGAGGATGAGGACCAAGCTGCTTGTTCAAAAAATGTAAAAAGGAAGATAGCAAATGAACTAGATAATGTTGTGAAGGCTAGTGTAGAGAGAGAGGTTATGGAAAAATCTCTTTTTTCTGACTCACTTCACCACAACAATAGGGATCCTTCACTGTTACTACTCCACTTCATTCACGTGTCAATGAAATTGTTTGTCCCGAGCCAAAAAGACCACAAATTAACCCATTAG

mRNA sequence

GTTCTATTTGTGGGTCTAAAAGCTTGCTACATTTTCCATAATGAAGATTTGGATAAGCAAAGAACTGAACCAAACAAGGGTAAGAAGTCAAAAAGACCTCGTACTACAATACCGACATTTGAACGACGACAATCTGATCGCACCTTGGTGAAAACGTCTTGGAGATTTGCAAAGTCGTTTAGTATGGACTTAACCAATATGGCCAGTGACGAGGAGGAGGATGAGGACCAAGCTGCTTGTTCAAAAAATGTAAAAAGGAAGATAGCAAATGAACTAGATAATGTTGTGAAGGCTAGTGTAGAGAGAGAGGTTATGGAAAAATCTCTTTTTTCTGACTCACTTCACCACAACAATAGGGATCCTTCACTGTTACTACTCCACTTCATTCACGTGTCAATGAAATTGTTTGTCCCGAGCCAAAAAGACCACAAATTAACCCATTAG

Coding sequence (CDS)

GTTCTATTTGTGGGTCTAAAAGCTTGCTACATTTTCCATAATGAAGATTTGGATAAGCAAAGAACTGAACCAAACAAGGGTAAGAAGTCAAAAAGACCTCGTACTACAATACCGACATTTGAACGACGACAATCTGATCGCACCTTGGTGAAAACGTCTTGGAGATTTGCAAAGTCGTTTAGTATGGACTTAACCAATATGGCCAGTGACGAGGAGGAGGATGAGGACCAAGCTGCTTGTTCAAAAAATGTAAAAAGGAAGATAGCAAATGAACTAGATAATGTTGTGAAGGCTAGTGTAGAGAGAGAGGTTATGGAAAAATCTCTTTTTTCTGACTCACTTCACCACAACAATAGGGATCCTTCACTGTTACTACTCCACTTCATTCACGTGTCAATGAAATTGTTTGTCCCGAGCCAAAAAGACCACAAATTAACCCATTAG

Protein sequence

VLFVGLKACYIFHNEDLDKQRTEPNKGKKSKRPRTTIPTFERRQSDRTLVKTSWRFAKSFSMDLTNMASDEEEDEDQAACSKNVKRKIANELDNVVKASVEREVMEKSLFSDSLHHNNRDPSLLLLHFIHVSMKLFVPSQKDHKLTH
Homology
[Close]
BLAST of Lsi11G011150 vs. ExPASy TrEMBL
Match: A0A5D3BZI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002220 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 14  NEDLDKQRTEPNKGKKSKRPRTTIPTFERRQSDRTLVKTSWRFAKSFSMDLTNMASDEEE 73
           + D DK+++    GKK KRPR+   T ERR+SDRTLVKTSWRFAKSFSMDLT   SD+EE
Sbjct: 78  SRDFDKEKSGQTVGKKLKRPRSITHTLERRRSDRTLVKTSWRFAKSFSMDLTQPGSDDEE 137

Query: 74  DEDQAACSKNVKRKIANELDNVVKASVEREVMEKSLFSDSLHHNNRD 121
           +E +A   +                  ERE+ E S   D+LHH+N D
Sbjct: 138 NEGEALHLR------------------EREIKETSPLPDTLHHSNVD 166

[Close]
BLAST of Lsi11G011150 vs. NCBI nr
Match: TYK04585.1 (hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-14
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 14  NEDLDKQRTEPNKGKKSKRPRTTIPTFERRQSDRTLVKTSWRFAKSFSMDLTNMASDEEE 73
           + D DK+++    GKK KRPR+   T ERR+SDRTLVKTSWRFAKSFSMDLT   SD+EE
Sbjct: 78  SRDFDKEKSGQTVGKKLKRPRSITHTLERRRSDRTLVKTSWRFAKSFSMDLTQPGSDDEE 137

Query: 74  DEDQAACSKNVKRKIANELDNVVKASVEREVMEKSLFSDSLHHNNRD 121
           +E +A   +                  ERE+ E S   D+LHH+N D
Sbjct: 138 NEGEALHLR------------------EREIKETSPLPDTLHHSNVD 166

The following BLAST results are available for this feature:
BLAST of Lsi11G011150 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G011150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BZI83.1e-1448.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lsi11G011150 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04585.16.4e-1448.60hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa][more]
BLAST of Lsi11G011150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G011150.1Lsi11G011150.1mRNA