Lsi11G009900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G009900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PHD finger protein EHD3
Location	chr11: 16571717 .. 16573290 (+)
RNA-Seq Expression	Lsi11G009900
Synteny	Lsi11G009900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGATCTATGAGGTTTGGAGTGTCCTATGTGTTTTCTACGTTTCCAAGGTCTAGGTTGTGAGTCCTATTTTTACATTAATACATCGCTTTTTTTTTAAAAAAACATTATTTGTAAATTGTAAGCAAACTGCAGATCCGAACCGCTTAATCGGTCTGGTCCGAAGAATAAACCGCGTCGTCGGCGCAAAACGGCTGCGAATTTCAGAATTTTTTTGAAAAAAAGGGACCAAGATAAGACCGCTGGTTTAGCCCAAAAAAAAAAAAAGAAAAAAAAAAAAACTTCTTCTGCTGCTCTCCCGCCTCTCGGATTTTGGAGTTTCCATTTCAGTTGCATCTTCTCTTCACCACATTTTGTTTGCTCAAGTATGCCTCCCTCTCTCGTTCCTCTTTATTCTGTTTTTTCACTTTTAAATTTCATTTCTCTTTGGTATCTGTTTGGTTGCTGAGAAAACTGTCCTGAGAAACGGAGAAGAATGGAGTTTGTCGGATTTTGTAGTTCCATTGTTTCAGCATTTTGTTTAGCAGCTACTGGATTAGTTTGAATTAGCTGCTTATTTGTTGAATATGTCGAACTTAAGGTTTTTCCCAGACAGGGGAAGTTGCAGATATAATTTTAGTGCCAGTGGTATATATTTTTTGGTTTTGTGTTTTTCTTATCAAATGGAGAATATTTCTTCAAGTGAATTAAGTGTGCTTCTTTTCGGTTCCTATCATTAGTTTTGCGAAGCTTGGGTGTGTGGATTCGACGGGAATTTTCAGAATCTAGTAACTCATGCGACCATCGGAACCCTAATTCTATCTGGAATTTAGGGTTTTCATCGTCCGGGCAGATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGTTCGGGTTTCTCTCTCCCTTTCAATCTATTGCAAATTCAATTAATTATGTGCACCTATTCCATTTTACTCCAAATTAGTTTAACCTTGTATTTCTTTACTGCTTTTTTGTTGGATTTAAACTTGGCCACATACTCGTAATAAATAGACTGTAAGTTCTATGAGATGTAATTAGATATGAAACGTGTAAAATTCATAAAAGTATCAAGGAAAAGTCAGAACTTGAGATTTTGGATTCTACACACAGAATTTAACCCTTGTTCAACTTATAAAATTTAAGAACATCTACTCCTACTTTAAGTGCAATTGTTTTCAAGGTAAGATGAGGGTGGTAAGGGAAAGCTGTTGATCTGCTTTCAAATTTTTCATTATCCTACTACCCCATACTAGGTGAAAAACTTGTTGCTGAACTGAGTGTTTTTGTCGGATGGTAGGATCTTGGAATGCAGAGTTGCTTAAACCAGATTTATTGTGATGAAACCCTTCAAGATTTATGA

mRNA sequence

GCCTGATCTATGAGGTTTGGAGTGTCCTATGTGTTTTCTACGTTTCCAAGGTCTAGGTTGTGAGTCCTATTTTTACATTAATACATCGCTTTTTTTTTAAAAAAACATTATTTGTAAATTGTAAGCAAACTGCAGATCCGAACCGCTTAATCGGTCTGGTCCGAAGAATAAACCGCGTCGTCGGCGCAAAACGGCTGCGAATTTCAGAATTTTTTTGAAAAAAAGGGACCAAGATAAGACCGCTGGTTTAGCCCAAAAAAAAAAAAAGAAAAAAAAAAAAACTTCTTCTGCTGCTCTCCCGCCTCTCGGATTTTGGAGTTTCCATTTCAGTTGCATCTTCTCTTCACCACATTTTGTTTGCTCAAGTATGCCTCCCTCTCTCGTTCCTCTTTATTCTGTTTTTTCACTTTTAAATTTCATTTCTCTTTGGTATCTGTTTGGTTGCTGAGAAAACTGTCCTGAGAAACGGAGAAGAATGGAGTTTGTCGGATTTTGTAGTTCCATTGTTTCAGCATTTTGTTTAGCAGCTACTGGATTAGTTTGAATTAGCTGCTTATTTGTTGAATATGTCGAACTTAAGGTTTTTCCCAGACAGGGGAAGTTGCAGATATAATTTTAGTGCCAGTGTTTTGCGAAGCTTGGGTGTGTGGATTCGACGGGAATTTTCAGAATCTAGTAACTCATGCGACCATCGGAACCCTAATTCTATCTGGAATTTAGGGTTTTCATCGTCCGGGCAGATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGATCTTGGAATGCAGAGTTGCTTAAACCAGATTTATTGTGATGAAACCCTTCAAGATTTATGA

Coding sequence (CDS)

ATGTCGAACTTAAGGTTTTTCCCAGACAGGGGAAGTTGCAGATATAATTTTAGTGCCAGTGTTTTGCGAAGCTTGGGTGTGTGGATTCGACGGGAATTTTCAGAATCTAGTAACTCATGCGACCATCGGAACCCTAATTCTATCTGGAATTTAGGGTTTTCATCGTCCGGGCAGATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGATCTTGGAATGCAGAGTTGCTTAAACCAGATTTATTGTGATGAAACCCTTCAAGATTTATGA

Protein sequence

MSNLRFFPDRGSCRYNFSASVLRSLGVWIRREFSESSNSCDHRNPNSIWNLGFSSSGQMVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCLNQIYCDETLQDL

Homology

[Close]

BLAST of Lsi11G009900 vs. ExPASy TrEMBL
Match: A0A6J1DJP9 (PHD finger protein EHD3 OS=Momordica charantia OX=3673 GN=LOC111021164 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+
Sbjct: 1   MVIEDEKSNGDCTGHALEVKFVKSEAGKNGVGMGVLNVVTEGVPGTSDGFRTYKRRKHTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LTSGSECKGD KTHVEA GQL+
Sbjct: 61  LTSGSECKGDGKTHVEAAGQLM 82

[Close]

BLAST of Lsi11G009900 vs. ExPASy TrEMBL
Match: A0A6J1IEM0 (PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1   MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LT GSECKG+ KTHVEA GQ V
Sbjct: 61  LTCGSECKGNGKTHVEASGQFV 82

[Close]

BLAST of Lsi11G009900 vs. ExPASy TrEMBL
Match: A0A6J1F863 (PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1   MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LT GSECKG+ KTHVEA GQ V
Sbjct: 61  LTCGSECKGNGKTHVEASGQFV 82

[Close]

BLAST of Lsi11G009900 vs. ExPASy TrEMBL
Match: A0A6J1EE29 (PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111433442 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1   MVIEDGESNGNCTGRPLEVKFMKSVAGKNGIGMGVLNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLVDLGMQSCL 149
           L  GSECKGD K HVEA  QLV   +Q  L
Sbjct: 61  LALGSECKGDGKVHVEAASQLVVQTVQETL 90

[Close]

BLAST of Lsi11G009900 vs. ExPASy TrEMBL
Match: A0A6J1IZG8 (PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111480549 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.8e-27
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTT-GVPGTSDGFRTYKRRKQT 118
           MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT  GVPGTSDGFRTYKRRKQT
Sbjct: 1   MVIEDGESNGNCTGRPLEVKFMKSVAGKNGIGMGVLNVVTEGGVPGTSDGFRTYKRRKQT 60

Query: 119 RLTSGSECKGDSKTHVEAVGQLVDLGMQSCL 149
           +L  GSEC GD K HVEA  QLV   +Q  L
Sbjct: 61  KLAFGSECMGDGKVHVEAASQLVFQTVQETL 91

[Close]

BLAST of Lsi11G009900 vs. NCBI nr
Match: XP_038897858.1 (PHD finger protein EHD3 [Benincasa hispida])

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-33
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           MVIEDG SNGDCTG ALEV FVKREA ENGIG GVLNVVTTGVPGTSDGFRTYKRRKQ R
Sbjct: 1   MVIEDGNSNGDCTGCALEVKFVKREAVENGIGKGVLNVVTTGVPGTSDGFRTYKRRKQIR 60

Query: 119 LTSGSECKGDSKTHVEAVGQLVDL--------GMQSCLN----QIYCDETLQDL 161
           LTSGSECKGDSKTHVEA GQLV +        G+ SC +     +  DE+ +DL
Sbjct: 61  LTSGSECKGDSKTHVEAAGQLVTVEETLQTLRGINSCEHVHSPMVNLDESPEDL 114

[Close]

BLAST of Lsi11G009900 vs. NCBI nr
Match: XP_022153712.1 (PHD finger protein EHD3 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+
Sbjct: 1   MVIEDEKSNGDCTGHALEVKFVKSEAGKNGVGMGVLNVVTEGVPGTSDGFRTYKRRKHTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LTSGSECKGD KTHVEA GQL+
Sbjct: 61  LTSGSECKGDGKTHVEAAGQLM 82

[Close]

BLAST of Lsi11G009900 vs. NCBI nr
Match: KAG6592138.1 (PHD finger protein EHD3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 72/94 (76.60%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 49  WNLGFSSSGQ--MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSD 108
           W  GF  + Q  M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSD
Sbjct: 82  WECGFHGNFQNLMIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSD 141

Query: 109 GFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV 141
           GFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Sbjct: 142 GFRTYKRRKQTKLTCGSECKGNGKTHVEASGQFV 175

[Close]

BLAST of Lsi11G009900 vs. NCBI nr
Match: XP_022975583.1 (PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975586.1 PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975591.1 PHD finger protein EHD3-like [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1   MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LT GSECKG+ KTHVEA GQ V
Sbjct: 61  LTCGSECKGNGKTHVEASGQFV 82

[Close]

BLAST of Lsi11G009900 vs. NCBI nr
Match: XP_023535868.1 (PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535869.1 PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535870.1 PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 118
           M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1   MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 119 LTSGSECKGDSKTHVEAVGQLV 141
           LT GSECKG+ KTHVEA GQ V
Sbjct: 61  LTCGSECKGNGKTHVEASGQFV 82

The following BLAST results are available for this feature:

BLAST of Lsi11G009900 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G009900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJP9	1.8e-31	85.37	PHD finger protein EHD3 OS=Momordica charantia OX=3673 GN=LOC111021164 PE=4 SV=1	[more]
A0A6J1IEM0	1.3e-29	82.93	PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV...	[more]
A0A6J1F863	1.3e-29	82.93	PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 ...	[more]
A0A6J1EE29	6.4e-29	75.56	PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111433442 PE=4 ...	[more]
A0A6J1IZG8	7.8e-27	73.63	PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111480549 PE=4 SV...	[more]

BLAST of Lsi11G009900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897858.1	5.2e-33	71.93	PHD finger protein EHD3 [Benincasa hispida]	[more]
XP_022153712.1	3.7e-31	85.37	PHD finger protein EHD3 [Momordica charantia]	[more]
KAG6592138.1	2.4e-30	76.60	PHD finger protein EHD3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022975583.1	2.7e-29	82.93	PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975586.1 PHD finger prote...	[more]
XP_023535868.1	2.7e-29	82.93	PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535869.1 PHD fi...	[more]

BLAST of Lsi11G009900 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009900.1	Lsi11G009900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding