Lsi11G009520 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAGCAATCTCCAACCCTACTCTCATTTTGGCTTCTAATCCTCAATTTATTCATGTAAGTATTGTTGACAATACTCTCTGCATTTACGTTGAATATTTGAAATTGTAAATCGTCCTAATGTCTGCATAGCTCATCTTACATTGTGTTATTAAACTTAGAAAGAAAAGTATCGTTAGGGACAATGAATCCTCCAACATATATCTCCACAATGATATGATATTGTCCACTTTGAGCATAACCCTCATGGATTTATTTTTCGTTTCACCCCAAAATGTCTCATACCATTAGAGATAGTTTTACTCGTTGATATACCATGAATCTTCTTCTTATCTACCCAATGTGGAACTTTTGGTCATACTCCAACAAATATAATTATTAGTAAATAGGGTGAATATGAAAGTAAATTCATTAGATTCAAGATAAGGAAAAAGCGTTATTTTTCGAACATTGATCTATCGTCTCAAAATTTACGTTTAGAAAGTCAACTTAAGAGAAGATAATTCTCTTGAATTTTTTCCATCATTCATTCTTTTCTTTAGAATACTACAATTCATACCAAGAGGGCGTAGAGATTCGAAGACGCCCTACGAGATTTAATTTATAAAAGATTGCTAATATCTTAATTGACTTTGATTGGTGTAATAATCTTTAGCTCTAAGAAAATTATATTTTTTTGGTGTTTTTCCACAGATAAGTCCACCACAAGATGGGTCAGAAGCTAAAGATGCCATTAACCCAGGAGCAAATGAAGGAATGATGTCCAGTGAAAATATGATGAAAGATAAGGCTTACTCTACTGCAGAACATGTAATGAAACACCAAATAATTCTTTTATTTTTAATCTTTTTCTTATCTATTTTTGTCTATTGTGTTTATTTACTACAAACTTTCTTCTTTCTTCCTTTCCTTCCTTAATAATCAATTCAAAATTTAAAAAATAACCATGATTTTATAACTTTTTTTTCAAGTTTCTTTTTAAATTTTAATTAATTAAGCTTATAAACATTCATCCCATGCATGCCTGTCTTTTCTTAACATTACTTTTTATTTTATTTTCCTAAGAATTCAAATATTTTTTTCAATTAAGAACAGTGAGAAAAATACTAAAAATGGTGAGAAGAAAAATCTATTTTCATTATGAGAAAACAAAAAAAATGAAATGTAGTTAGGCCTAAAAGTAGTTTTCAAGATCCTATTTTTTTTATTTTAAAATTTCATTAAGATTAATATTTTAATGTGACAAAGATTAAAATATAATGAAATCTAAAATACAAGAACCAAAATGTTATTTTAACATTTTCTTCTTAGTTCAACAATTGTAAAGCAAGTGTGTAATTTGTGGGATAGGATAATAATCGATGTCTTATATATCTACCGAGTTAATTTGAATACAAGACAACTAATAGTTTGCAGGAAGAAAACGATGTCGAACTGTACTAGATTTTTCCTCACCCTAAAACACAATTTTGGCCAACTTTGTTATGAATAATAATGATTGGAGAAAGAAAAGAATGATTTTATATTATTAAGATGAAAAATTGTGTGTATATAATTGCAGGTGAGTGAAAAGACAATGGATATGGCAGGAATGGTCAGTGCAAACGCACATGAGGTTTCAGCAAAGGCAAAGCAAGCAATGAAAGCAGCATGGGACACAACAAAGGACACAGTCCAAAGGGCAAAAAACACATTGGTTGACACTGCCAATGACTCCAAGGAATTTGTCAAAGCAAATGCTAAATCTGTTGAGAAGAGCATGAACACCAAGAACCGTCCTTAA ATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAGCAATCTCCAACCCTACTCTCATTTTGGCTTCTAATCCTCAATTTATTCATATAAGTCCACCACAAGATGGGTCAGAAGCTAAAGATGCCATTAACCCAGGAGCAAATGAAGGAATGATGTCCAGTGAAAATATGATGAAAGATAAGGCTTACTCTACTGCAGAACATGTGAGTGAAAAGACAATGGATATGGCAGGAATGGTCAGTGCAAACGCACATGAGGTTTCAGCAAAGGCAAAGCAAGCAATGAAAGCAGCATGGGACACAACAAAGGACACAGTCCAAAGGGCAAAAAACACATTGGTTGACACTGCCAATGACTCCAAGGAATTTGTCAAAGCAAATGCTAAATCTGTTGAGAAGAGCATGAACACCAAGAACCGTCCTTAA ATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAGCAATCTCCAACCCTACTCTCATTTTGGCTTCTAATCCTCAATTTATTCATATAAGTCCACCACAAGATGGGTCAGAAGCTAAAGATGCCATTAACCCAGGAGCAAATGAAGGAATGATGTCCAGTGAAAATATGATGAAAGATAAGGCTTACTCTACTGCAGAACATGTGAGTGAAAAGACAATGGATATGGCAGGAATGGTCAGTGCAAACGCACATGAGGTTTCAGCAAAGGCAAAGCAAGCAATGAAAGCAGCATGGGACACAACAAAGGACACAGTCCAAAGGGCAAAAAACACATTGGTTGACACTGCCAATGACTCCAAGGAATTTGTCAAAGCAAATGCTAAATCTGTTGAGAAGAGCATGAACACCAAGAACCGTCCTTAA MASSTLFKSFGAAITRRSAISNPTLILASNPQFIHISPPQDGSEAKDAINPGANEGMMSSENMMKDKAYSTAEHVSEKTMDMAGMVSANAHEVSAKAKQAMKAAWDTTKDTVQRAKNTLVDTANDSKEFVKANAKSVEKSMNTKNRP Homology
BLAST of Lsi11G009520 vs. ExPASy Swiss-Prot
Match: Q8LFD5 (Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07 Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of Lsi11G009520 vs. ExPASy TrEMBL
Match: A0A6J1F3W7 (uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 7.1e-43 Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of Lsi11G009520 vs. ExPASy TrEMBL
Match: A0A6J1ICL4 (uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 1.0e-41 Identity = 108/153 (70.59%), Postives = 121/153 (79.08%), Query Frame = 0
BLAST of Lsi11G009520 vs. ExPASy TrEMBL
Match: A0A6J1CSM2 (uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC111014202 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 6.7e-33 Identity = 94/158 (59.49%), Postives = 111/158 (70.25%), Query Frame = 0
BLAST of Lsi11G009520 vs. ExPASy TrEMBL
Match: A0A2N9J2L7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23 Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 0
BLAST of Lsi11G009520 vs. ExPASy TrEMBL
Match: A0A5C7GVU8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024492 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20 Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 0
BLAST of Lsi11G009520 vs. NCBI nr
Match: XP_038889268.1 (uncharacterized protein At4g13230-like [Benincasa hispida]) HSP 1 Score: 221.5 bits (563), Expect = 4.9e-54 Identity = 124/151 (82.12%), Postives = 131/151 (86.75%), Query Frame = 0
BLAST of Lsi11G009520 vs. NCBI nr
Match: XP_022933143.1 (uncharacterized protein At4g13230 [Cucurbita moschata]) HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42 Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 0
BLAST of Lsi11G009520 vs. NCBI nr
Match: XP_022973925.1 (uncharacterized protein At4g13230 [Cucurbita maxima]) HSP 1 Score: 179.5 bits (454), Expect = 2.1e-41 Identity = 108/153 (70.59%), Postives = 121/153 (79.08%), Query Frame = 0
BLAST of Lsi11G009520 vs. NCBI nr
Match: KAG6598970.1 (hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177.9 bits (450), Expect = 6.2e-41 Identity = 106/153 (69.28%), Postives = 121/153 (79.08%), Query Frame = 0
BLAST of Lsi11G009520 vs. NCBI nr
Match: XP_023546410.1 (uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 175.6 bits (444), Expect = 3.1e-40 Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 0
BLAST of Lsi11G009520 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08 Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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