Lsi11G009330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G009330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	eukaryotic translation initiation factor 4B3
Location	chr11: 13387510 .. 13389578 (+)
RNA-Seq Expression	Lsi11G009330
Synteny	Lsi11G009330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGGTTTGCATTTGATGGAGATCTGCAAGCGCCTTTTGCCTAGACTGCAGTTATGAAGCATGGTTATGCTACCGAATCCAAATGTGCATAGTGAGTACATAATGAGTTCAATTATGCATAACTTAAAAAAAAAAAAAAAAAACAGGAATTTGAAACTACAAAAAGAATTACTTAGGTAATCTATTCATCAATGAACAAGTCAATGTATCAACAAGCAAGGAAAGCATTAAATAAATTAATGGAAAACTTCGATTTTAAAATGTCCACTACCATAACAGAAAAAAGTTGAAATTGGGAAATGATGCGTTTAAAGAGAGAATTTTGTTTATCGATATATCAAGAAGGGAAAAAAATGTTCAAGGATACATGTTCCCAATGGGAATGGAAAAATACAAAAGAAAGAAGCTAAAAAATACAAGATAAAACAATGAAGAAAAACTAACAAAGCAAACAAGAACACAACCAATAAGCGGCAAAAAGAGCTCCACTCTAACTAAAACTTCAGAAGCTTCTTATGGTGAAAAATAGGCAGGAATCTCCAAATTGCAGCTTTTCCTTGAAAAATAAACCCATGGATAGAAATTTTCAATAATGCATTTCCTGCTGAAGAGATGGAAATCAAAGACTAATTTTACGATCCAAATTGTTGCACTAGTTTAATGCAGTTCTTGACAAAATTCTTCATTCCAACAGACACAAACAACCAGCTCGGGCTACTACTGATCAGGAAAAAAACAAGCTAGTCTTGAAAAAAAGGAATCATAAAAAGGATAGACCCATTTCTTAGAAACAAATAACCTGTCAAATAATGAGTGAGAAGCTGCATCTCCTACCCTTGACCATGTGAATAGAGGCAGTTTCAGCATACCAAGATCTTCAATATGATTGTTAAACTTTCTCATGCCCTTCATTTGCCTTCTAACTAGGTTCAAGTAGATTTAACCATTTTTTTGTCAAACATGACAATATTTATTGTCTTGAGTTAAAATCAAATATGAGCACTGATTTTGAAGAGATTTCTTTAAAACCGATTGCTTCGAAGCAACCAAGTTCTCTATTACTCCATGAAATTATCTTCATTGAGGAAATAACCAAAAAGAACCACTAAAATTTGATCTGAGGTGACACAGATGAAATTGCACGCATCCGAAGACTGAAATTTCAATAAAATATGATTTTTTTATTTTTTATTTTCTTTATTTTTATTTTTATTTTTATTTTTTTGAGGAATTGAGCGAGTGGACTCTTCTGGAGGCTCTTCAATGATCTGTTCATCAACAAACTTTAAAGAAGGGTCTACAGCTTCATCCAAAAATGTAGAGCAAAGGATTGTTCAAAATGATCATCCTCACAATTGGGCTTTAACTAGGAAACCTATGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCTATGGCTGCAAATGGATTTGAGAGGAGGGAGAGAGGAGTAGGGTTTTCGGATTTGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATATTCCGTCAAATGGGAGGAGATTTGACAGAGAGCGACGATGAGGGTTCACGGCGAGCAGCAGTGGGCAGATTCAGACAATTGGGAGAGGAAGAAAAAGGAAGGTAACACTGGTGGCATCATTGGCGGTCAACCAAAGCTTAATTTGCAGCCATGGACACTGCCGGTTAGCGACAGGAAATCGTTGGAGATATCAGGGACGGTGGCAAGGTCCAAGAGTTCAAACCCATTTGGAGCGGTGAGGCCGAGGGAAGAGGTTCTAGCCAAGAAGGGACATGACTGGAAAAAGCTTGACAAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGCCATTTCCTTTGGGAAAAAGAGCTTTAACAATAGAATAGAACAGAGAGGAGCTGGAGGAAGCCGAAGGCACTGCCGCAGGAGTCACCGGAATCTCTTCTTGACGGTGGGGAGGAATATGAAAATGGAGATTGCAAAGGCGAACGCAGAGGGGACTATAATGGAGCTTGATGTAACACTGAGAGATTGA

mRNA sequence

ATGCACGGAATTGAGCGAGTGGACTCTTCTGGAGGCTCTTCAATGATCTGTTCATCAACAAACTTTAAAGAAGGGTCTACAGCTTCATCCAAAAATGTAGAGCAAAGGATTGTTCAAAATGATCATCCTCACAATTGGGCTTTAACTAGGAAACCTATGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCTATGGCTGCAAATGGATTTGAGAGGAGGGAGAGAGGAGTAGGGTTTTCGGATTTGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGAGAGCGACGATGAGGGTTCACGGCGAGCAGCAGTGGGCAGATTCAGACAATTGGGAGAGGAAGAAAAAGGAAGGTAACACTGGTGGCATCATTGGCGGTCAACCAAAGCTTAATTTGCAGCCATGGACACTGCCGGTTAGCGACAGGAAATCGTTGGAGATATCAGGGACGGTGGCAAGGTCCAAGAGTTCAAACCCATTTGGAGCGGTGAGGCCGAGGGAAGAGGTTCTAGCCAAGAAGGGACATGACTGGAAAAAGCTTGACAAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGCCATTTCCTTTGGGAAAAAGAGCTTTAACAATAGAATAGAACAGAGAGGAGCTGGAGGAAGCCGAAGGCACTGCCGCAGGAGTCACCGGAATCTCTTCTTGACGGTGGGGAGGAATATGAAAATGGAGATTGCAAAGGCGAACGCAGAGGGGACTATAATGGAGCTTGATGTAACACTGAGAGATTGA

Coding sequence (CDS)

ATGCACGGAATTGAGCGAGTGGACTCTTCTGGAGGCTCTTCAATGATCTGTTCATCAACAAACTTTAAAGAAGGGTCTACAGCTTCATCCAAAAATGTAGAGCAAAGGATTGTTCAAAATGATCATCCTCACAATTGGGCTTTAACTAGGAAACCTATGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCTATGGCTGCAAATGGATTTGAGAGGAGGGAGAGAGGAGTAGGGTTTTCGGATTTGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGAGAGCGACGATGAGGGTTCACGGCGAGCAGCAGTGGGCAGATTCAGACAATTGGGAGAGGAAGAAAAAGGAAGGTAACACTGGTGGCATCATTGGCGGTCAACCAAAGCTTAATTTGCAGCCATGGACACTGCCGGTTAGCGACAGGAAATCGTTGGAGATATCAGGGACGGTGGCAAGGTCCAAGAGTTCAAACCCATTTGGAGCGGTGAGGCCGAGGGAAGAGGTTCTAGCCAAGAAGGGACATGACTGGAAAAAGCTTGACAAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGCCATTTCCTTTGGGAAAAAGAGCTTTAACAATAGAATAGAACAGAGAGGAGCTGGAGGAAGCCGAAGGCACTGCCGCAGGAGTCACCGGAATCTCTTCTTGACGGTGGGGAGGAATATGAAAATGGAGATTGCAAAGGCGAACGCAGAGGGGACTATAATGGAGCTTGATGTAACACTGAGAGATTGA

Protein sequence

MHGIERVDSSGGSSMICSSTNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERGVGFSDLQSSKADESESWRATMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRRSHRNLFLTVGRNMKMEIAKANAEGTIMELDVTLRD

Homology

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BLAST of Lsi11G009330 vs. ExPASy Swiss-Prot
Match: Q9SZP8 (Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana OX=3702 GN=EIF4B3 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-21
Identity = 92/272 (33.82%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 9   SSGGSSMICSSTNFKEGSTASSKNVEQRIVQNDHPHNWALTRKP-MADEVDNWALTKKPM 68
           S GG      S++ + GS+  S++ E+R    +     +    P  ADE DNWA  KKP+
Sbjct: 117 SYGGGRYGDESSSSRWGSSRVSEDGERRGGGFNRDREPSRDSGPSRADEDDNWAAAKKPI 176

Query: 69  AANGFERRERGVG---FSDLQSSKADESESWRATM------------------------- 128
           + NGFERRERG G   F     SKADE +SW +T                          
Sbjct: 177 SGNGFERRERGSGGGFFESQSQSKADEVDSWVSTKPSEPRRFVSSNGGGGDRFEKRGSFE 236

Query: 129 -------RVHGEQQWADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----D 188
                    +G    ++SD W R+++E     G+     G +P+L LQP TLPV+     
Sbjct: 237 SLSRNRDSQYGGGGGSESDTWGRRREESGAANGSPPPSGGSRPRLVLQPRTLPVAVVEVV 296

Query: 189 RKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEEKTEKS 235
           +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++     EK 
Sbjct: 297 KPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLEAEKLKDIAA--AMEKP 356

[Close]

BLAST of Lsi11G009330 vs. ExPASy Swiss-Prot
Match: Q9AUJ7 (Eukaryotic translation initiation factor 4B1 OS=Triticum aestivum OX=4565 GN=EIF4B PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 59/181 (32.60%), Postives = 88/181 (48.62%), Query Frame = 0


Query: 54  ADEVDNWALTKKP-------MAANGFERRERGVGFSDLQSSKADESESWRATMRVHGEQQ 113
           +D++DNW+  KKP       +   G  R   G GF   +SS     ES     R      
Sbjct: 182 SDDIDNWSRDKKPLPSRYPSLGTGGGFRESSGGGFR--ESSGGGFRESSGGGFR--DSPG 241

Query: 114 WADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEI-SGTVARSKSSNPFGAV 173
            +DSD W R           G +P+LNL P   P  D  +  + +  VARS+ S PFGA 
Sbjct: 242 PSDSDRWVRGAVPAPMTN-NGDRPRLNLNP---PKRDPSATPVPAAEVARSRPS-PFGAA 301

Query: 174 RPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSR 227
           +PREEVLA+KG DW+K++ ++E K    +    +  ++A S    S  +++   G+ G+ 
Sbjct: 302 KPREEVLAEKGLDWRKMEGEIEKKTSRPTSSHSSRPNSAHSSRPGSPGSQVSAVGSEGAP 353

[Close]

BLAST of Lsi11G009330 vs. ExPASy Swiss-Prot
Match: Q9LIN5 (Eukaryotic translation initiation factor 4B1 OS=Arabidopsis thaliana OX=3702 GN=EIF4B1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 58/189 (30.69%), Postives = 87/189 (46.03%), Query Frame = 0


Query: 54  ADEVDNWALTKKPMAANGFERRER----GVGFSDLQS-------------SKADESESWR 113
           ADEVD+W   KKP+ +    R+ R    G GF    S             S+AD+ ++W 
Sbjct: 168 ADEVDDWGKEKKPLPSFDQGRQGRYSGDGGGFGGGGSGFGGGGGGGGGGLSRADDVDNWG 227

Query: 114 ATMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT---- 173
           A     G++Q        R    G++ G  G + +  L      V + + +E  G+    
Sbjct: 228 A-----GKRQAP-----VRSSTFGSSFGDSGQEERRRL------VLEPRKVESGGSETPP 287

Query: 174 -VARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKS 221
            V ++   NPFGA RPRE+VLA+KG DWKK+D ++E+K         T   ++     +S
Sbjct: 288 VVEKTSKPNPFGAARPREDVLAEKGLDWKKIDSEIEAKKGSSQTSRPTSAHSSRPSSAQS 338

[Close]

BLAST of Lsi11G009330 vs. ExPASy Swiss-Prot
Match: Q9SAD7 (Eukaryotic translation initiation factor 4B2 OS=Arabidopsis thaliana OX=3702 GN=EIF4B2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 87  SKADESESWRA------TMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLP 146
           SKADE ++W A      T      +   + D W R       GG+   + +L  +P    
Sbjct: 219 SKADEVDNWAAGKAKSSTFGSGFRESGPEPDRWARGVLPSG-GGVQEERRRLVFEP---- 278

Query: 147 VSDRKSLEISGTVARSKSS--NPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEK 206
              +   E+S T    K+S  +PFGA RPRE+VLA+KG DWKKLD  +E+K  + S    
Sbjct: 279 --RKADTEVSETPTAVKTSKPSPFGAARPREQVLAEKGLDWKKLDSDIEAKKGQTSRPSS 338

[Close]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL
Match: A0A1S3BJA3 (eukaryotic translation initiation factor 4B3 OS=Cucumis melo OX=3656 GN=LOC103490303 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 9.8e-59
Identity = 135/212 (63.68%), Postives = 153/212 (72.17%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +    ++   +        ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSGGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVIGSRPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNN 215
           D+QLESKIKEVSVEEKTEKSNAISF K+SF+N
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNAISFRKRSFDN 334

[Close]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL
Match: A0A5A7U3A1 (Eukaryotic translation initiation factor 4B3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00800 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 135/212 (63.68%), Postives = 152/212 (71.70%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +    ++   +        ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSGGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVIGSRPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNN 215
           D+QLESKIKEVSVEEKTEKSNAISF K+SF N
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNAISFRKRSFGN 334

[Close]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL
Match: A0A0A0K4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G009760 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 136/228 (59.65%), Postives = 156/228 (68.42%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +   + D    +  +R   ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNRADSSKEFTSSR---ADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSDGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+I  +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVISSRPKLSLQPRTLPVVDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRR 231
           D+QLESKIKEVSVEEKTEKSN I F K+SF N   +     + R  R+
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNPIFFRKRSFGNGNSRAAEDRTERSWRK 347

[Close]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL
Match: A0A6J1C673 (eukaryotic translation initiation factor 4B3-like OS=Momordica charantia OX=3673 GN=LOC111007756 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 121/191 (63.35%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 54  ADEVDNWALTKKPMAANGFERRERGVGFSDLQSSKADESESW------------------ 113
           ADEVDNWALTKKPMAANGFERR+RG GFSDL SSKADESESW                  
Sbjct: 170 ADEVDNWALTKKPMAANGFERRDRGGGFSDLPSSKADESESWISNKSNVPSDVRRFGTNG 229

Query: 114 -----RATMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEIS 173
                R      G    AD +NW RKK+EGN GG + G+PKLNLQP TLPVSD KS EIS
Sbjct: 230 GFERERRGGFPTGGGGGADLENWGRKKEEGNNGGSVAGRPKLNLQPRTLPVSDGKSSEIS 289

Query: 174 GT--VARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFG 220
           GT   ARSKSSNPFG  RPRE+VLA+KGHDWKKLD+QLESKIK+    EK E SN+ SFG
Sbjct: 290 GTGLGARSKSSNPFGEARPREQVLAEKGHDWKKLDEQLESKIKD-EQPEKVENSNSTSFG 349

[Close]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL
Match: A0A6J1ERF5 (eukaryotic translation initiation factor 4B3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435193 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 137/240 (57.08%), Postives = 154/240 (64.17%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPM----ADEVDNWALTKKPMAANGFER 78
           S+N K GS+  S   E R  +ND   N   + K      ADEVDNWA TKKPMA NGFER
Sbjct: 136 SSNSKWGSSRVSD--ENR--RNDGGFNRGDSSKEFVPSRADEVDNWASTKKPMAGNGFER 195

Query: 79  RERGVGFSDLQSSKADESESW-------RATMRVHGEQ---------------QWADSDN 138
           R+RG+GFSD QSSKADESESW        +  R  G                   ADSD 
Sbjct: 196 RDRGLGFSDSQSSKADESESWVSNKSNVPSDARRFGANGGFDRERRGGFPASGGGADSDT 255

Query: 139 WERKKKEGNTGGIIGG--QPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREE 198
           W RKK EGN+GG  GG  +PKLNLQP TLPV+D KS EISGT ARSKSSNPFG  RPREE
Sbjct: 256 WGRKKDEGNSGGGGGGGSRPKLNLQPRTLPVNDVKSSEISGTTARSKSSNPFGEARPREE 315

Query: 199 VLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRR 231
           VLA+KGHDWKKLD++LE KIKEVS+ EKTEKSNAI  GKKSF N   +     + R  R+
Sbjct: 316 VLAEKGHDWKKLDEELELKIKEVSM-EKTEKSNAI--GKKSFGNGTTRAAEDRTERSWRK 368

[Close]

BLAST of Lsi11G009330 vs. NCBI nr
Match: XP_038887905.1 (eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 4.4e-61
Identity = 149/238 (62.61%), Postives = 166/238 (69.75%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPM----ADEVDNWALTKKPMAANGFER 78
           S+N K GS+  S   E R  +N +  N A + K      ADEVDNWALTKKPMA NGFER
Sbjct: 129 SSNSKWGSSRVSD--ENR--RNGNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFER 188

Query: 79  RERGVGFSDLQSSKADESESW---RATMRVHGEQ-------------------QWADSDN 138
           RERGVGFSD QSSKADESESW   +  +   G +                     ADSDN
Sbjct: 189 RERGVGFSDSQSSKADESESWVSNKTNVPSDGRRFGANGGFDRERRGGFTASGGGADSDN 248

Query: 139 WERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVL 198
           W RKK+EGNTGG+IG +PKLNLQP TLPVSD KS EISGT ARSKSSNPFGA RPREEVL
Sbjct: 249 WGRKKEEGNTGGVIGSRPKLNLQPRTLPVSDGKSSEISGTAARSKSSNPFGAARPREEVL 308

Query: 199 AKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRR 231
           A+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISFGKKSF N   + G   + +  R+
Sbjct: 309 AEKGHDWKKLDEQLESKIKEVSVEEKTEKSNAISFGKKSFGNGKSRAGEDRTEKSWRK 362

[Close]

BLAST of Lsi11G009330 vs. NCBI nr
Match: XP_038887904.1 (eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 4.4e-61
Identity = 149/238 (62.61%), Postives = 166/238 (69.75%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPM----ADEVDNWALTKKPMAANGFER 78
           S+N K GS+  S   E R  +N +  N A + K      ADEVDNWALTKKPMA NGFER
Sbjct: 129 SSNSKWGSSRVSD--ENR--RNGNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFER 188

Query: 79  RERGVGFSDLQSSKADESESW---RATMRVHGEQ-------------------QWADSDN 138
           RERGVGFSD QSSKADESESW   +  +   G +                     ADSDN
Sbjct: 189 RERGVGFSDSQSSKADESESWVSNKTNVPSDGRRFGANGGFDRERRGGFTASGGGADSDN 248

Query: 139 WERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVL 198
           W RKK+EGNTGG+IG +PKLNLQP TLPVSD KS EISGT ARSKSSNPFGA RPREEVL
Sbjct: 249 WGRKKEEGNTGGVIGSRPKLNLQPRTLPVSDGKSSEISGTAARSKSSNPFGAARPREEVL 308

Query: 199 AKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRR 231
           A+KGHDWKKLD+QLESKIKEVSVEEKTEKSNAISFGKKSF N   + G   + +  R+
Sbjct: 309 AEKGHDWKKLDEQLESKIKEVSVEEKTEKSNAISFGKKSFGNGKSRAGEDRTEKSWRK 362

[Close]

BLAST of Lsi11G009330 vs. NCBI nr
Match: XP_008447975.1 (PREDICTED: eukaryotic translation initiation factor 4B3 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-58
Identity = 135/212 (63.68%), Postives = 153/212 (72.17%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +    ++   +        ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSGGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVIGSRPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNN 215
           D+QLESKIKEVSVEEKTEKSNAISF K+SF+N
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNAISFRKRSFDN 334

[Close]

BLAST of Lsi11G009330 vs. NCBI nr
Match: KAA0049734.1 (eukaryotic translation initiation factor 4B3 [Cucumis melo var. makuwa] >TYK12143.1 eukaryotic translation initiation factor 4B3 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-58
Identity = 135/212 (63.68%), Postives = 152/212 (71.70%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +    ++   +        ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNGSNRADSSKEFTSSRADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSGGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+IG +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVIGSRPKLSLQPRTLPVGDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNN 215
           D+QLESKIKEVSVEEKTEKSNAISF K+SF N
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNAISFRKRSFGN 334

[Close]

BLAST of Lsi11G009330 vs. NCBI nr
Match: XP_004144838.1 (eukaryotic translation initiation factor 4B3 [Cucumis sativus] >KGN43232.1 hypothetical protein Csa_020473 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 3.2e-56
Identity = 136/228 (59.65%), Postives = 156/228 (68.42%), Query Frame = 0


Query: 19  STNFKEGSTASSKNVEQRIVQNDHPHNWALTRKPMADEVDNWALTKKPMAANGFERRERG 78
           S+N K GS+  S    +   + D    +  +R   ADEVDNWALTKKPMA NGFERRERG
Sbjct: 123 SSNSKWGSSRVSDENRRSSNRADSSKEFTSSR---ADEVDNWALTKKPMAGNGFERRERG 182

Query: 79  VGFSDLQSSKADESESWRAT--------MRVHGEQQ--------WADSDNWERKKKEGNT 138
           +GFSD QSSKADESESW +          R   E++         ADSDNW RKK+EGN 
Sbjct: 183 LGFSDSQSSKADESESWVSNKSNIPSDGRRFDRERRGGFTASGGGADSDNWGRKKEEGNA 242

Query: 139 GGIIGGQPKLNLQPWTLPVSDRKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKL 198
           GG+I  +PKL+LQP TLPV D KS EIS T ARSKSSNPFGA RPREEVLA+KGHDWKKL
Sbjct: 243 GGVISSRPKLSLQPRTLPVVDGKSSEISATAARSKSSNPFGAARPREEVLAEKGHDWKKL 302

Query: 199 DKQLESKIKEVSVEEKTEKSNAISFGKKSFNNRIEQRGAGGSRRHCRR 231
           D+QLESKIKEVSVEEKTEKSN I F K+SF N   +     + R  R+
Sbjct: 303 DEQLESKIKEVSVEEKTEKSNPIFFRKRSFGNGNSRAAEDRTERSWRK 347

[Close]

BLAST of Lsi11G009330 vs. TAIR 10
Match: AT4G38710.2 (glycine-rich protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 96/291 (32.99%), Postives = 138/291 (47.42%), Query Frame = 0


Query: 9   SSGGSSMICSSTNFKEGSTASSKNVEQRIVQNDHPHNWALTRKP-MADEVDNWALTKKPM 68
           S GG      S++ + GS+  S++ E+R    +     +    P  ADE DNWA  KKP+
Sbjct: 117 SYGGGRYGDESSSSRWGSSRVSEDGERRGGGFNRDREPSRDSGPSRADEDDNWAAAKKPI 176

Query: 69  AANGFERRERGVG---FSDLQSSKADESESWRATM------------------------- 128
           + NGFERRERG G   F     SKADE +SW +T                          
Sbjct: 177 SGNGFERRERGSGGGFFESQSQSKADEVDSWVSTKPSEPRRFVSSNGGGGDRFEKRGSFE 236

Query: 129 -------RVHGEQQWADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----D 188
                    +G    ++SD W R+++E     G+     G +P+L LQP TLPV+     
Sbjct: 237 SLSRNRDSQYGGGGGSESDTWGRRREESGAANGSPPPSGGSRPRLVLQPRTLPVAVVEVV 296

Query: 189 RKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEEKTEKS 248
           +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++     EK 
Sbjct: 297 KPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLEAEKLKDIAA--AMEKP 356

Query: 249 NAISFGKKSFNNRIEQRGAGGSRRHCRRSHRNLFLTVGRNMKMEIAKANAE 254
           N  S GK  F       G G  R+   R  R+   +   +  ME+   N E
Sbjct: 357 NEKSTGKMGF-------GLGNGRKDEERIERSWRKSFSLHSYMEVDVLNTE 398

[Close]

BLAST of Lsi11G009330 vs. TAIR 10
Match: AT4G38710.1 (glycine-rich protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-22
Identity = 92/272 (33.82%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 9   SSGGSSMICSSTNFKEGSTASSKNVEQRIVQNDHPHNWALTRKP-MADEVDNWALTKKPM 68
           S GG      S++ + GS+  S++ E+R    +     +    P  ADE DNWA  KKP+
Sbjct: 117 SYGGGRYGDESSSSRWGSSRVSEDGERRGGGFNRDREPSRDSGPSRADEDDNWAAAKKPI 176

Query: 69  AANGFERRERGVG---FSDLQSSKADESESWRATM------------------------- 128
           + NGFERRERG G   F     SKADE +SW +T                          
Sbjct: 177 SGNGFERRERGSGGGFFESQSQSKADEVDSWVSTKPSEPRRFVSSNGGGGDRFEKRGSFE 236

Query: 129 -------RVHGEQQWADSDNWERKKKE-----GNTGGIIGGQPKLNLQPWTLPVS----D 188
                    +G    ++SD W R+++E     G+     G +P+L LQP TLPV+     
Sbjct: 237 SLSRNRDSQYGGGGGSESDTWGRRREESGAANGSPPPSGGSRPRLVLQPRTLPVAVVEVV 296

Query: 189 RKSLEISGTVARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLES-KIKEVSVEEKTEKS 235
           +    +   V + K +NPFG  RPREEVLA+KG DWK++D++LE+ K+K+++     EK 
Sbjct: 297 KPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLEAEKLKDIAA--AMEKP 356

[Close]

BLAST of Lsi11G009330 vs. TAIR 10
Match: AT3G26400.1 (eukaryotic translation initiation factor 4B1 )

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-09
Identity = 58/189 (30.69%), Postives = 87/189 (46.03%), Query Frame = 0


Query: 54  ADEVDNWALTKKPMAANGFERRER----GVGFSDLQS-------------SKADESESWR 113
           ADEVD+W   KKP+ +    R+ R    G GF    S             S+AD+ ++W 
Sbjct: 168 ADEVDDWGKEKKPLPSFDQGRQGRYSGDGGGFGGGGSGFGGGGGGGGGGLSRADDVDNWG 227

Query: 114 ATMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLPVSDRKSLEISGT---- 173
           A     G++Q        R    G++ G  G + +  L      V + + +E  G+    
Sbjct: 228 A-----GKRQAP-----VRSSTFGSSFGDSGQEERRRL------VLEPRKVESGGSETPP 287

Query: 174 -VARSKSSNPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEKTEKSNAISFGKKS 221
            V ++   NPFGA RPRE+VLA+KG DWKK+D ++E+K         T   ++     +S
Sbjct: 288 VVEKTSKPNPFGAARPREDVLAEKGLDWKKIDSEIEAKKGSSQTSRPTSAHSSRPSSAQS 338

[Close]

BLAST of Lsi11G009330 vs. TAIR 10
Match: AT1G13020.1 (eukaryotic initiation factor 4B2 )

HSP 1 Score: 55.5 bits (132), Expect = 7.8e-08
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 87  SKADESESWRA------TMRVHGEQQWADSDNWERKKKEGNTGGIIGGQPKLNLQPWTLP 146
           SKADE ++W A      T      +   + D W R       GG+   + +L  +P    
Sbjct: 219 SKADEVDNWAAGKAKSSTFGSGFRESGPEPDRWARGVLPSG-GGVQEERRRLVFEP---- 278

Query: 147 VSDRKSLEISGTVARSKSS--NPFGAVRPREEVLAKKGHDWKKLDKQLESKIKEVSVEEK 206
              +   E+S T    K+S  +PFGA RPRE+VLA+KG DWKKLD  +E+K  + S    
Sbjct: 279 --RKADTEVSETPTAVKTSKPSPFGAARPREQVLAEKGLDWKKLDSDIEAKKGQTSRPSS 338

The following BLAST results are available for this feature:

BLAST of Lsi11G009330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZP8	1.6e-21	33.82	Eukaryotic translation initiation factor 4B3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9AUJ7	1.8e-09	32.60	Eukaryotic translation initiation factor 4B1 OS=Triticum aestivum OX=4565 GN=EIF...	[more]
Q9LIN5	1.3e-07	30.69	Eukaryotic translation initiation factor 4B1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SAD7	1.1e-06	34.38	Eukaryotic translation initiation factor 4B2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Lsi11G009330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJA3	9.8e-59	63.68	eukaryotic translation initiation factor 4B3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5A7U3A1	1.3e-58	63.68	Eukaryotic translation initiation factor 4B3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0K4M1	1.6e-56	59.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G009760 PE=4 SV=1	[more]
A0A6J1C673	6.4e-50	63.35	eukaryotic translation initiation factor 4B3-like OS=Momordica charantia OX=3673...	[more]
A0A6J1ERF5	1.6e-48	57.08	eukaryotic translation initiation factor 4B3 isoform X2 OS=Cucurbita moschata OX...	[more]

BLAST of Lsi11G009330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887905.1	4.4e-61	62.61	eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida]	[more]
XP_038887904.1	4.4e-61	62.61	eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida]	[more]
XP_008447975.1	2.0e-58	63.68	PREDICTED: eukaryotic translation initiation factor 4B3 [Cucumis melo]	[more]
KAA0049734.1	2.6e-58	63.68	eukaryotic translation initiation factor 4B3 [Cucumis melo var. makuwa] >TYK1214...	[more]
XP_004144838.1	3.2e-56	59.65	eukaryotic translation initiation factor 4B3 [Cucumis sativus] >KGN43232.1 hypot...	[more]

BLAST of Lsi11G009330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38710.2	1.0e-23	32.99	glycine-rich protein	[more]
AT4G38710.1	1.1e-22	33.82	glycine-rich protein	[more]
AT3G26400.1	9.2e-09	30.69	eukaryotic translation initiation factor 4B1	[more]
AT1G13020.1	7.8e-08	34.38	eukaryotic initiation factor 4B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010433	Plant specific eukaryotic initiation factor 4B	PFAM	PF06273	eIF-4B	coord: 49..190 e-value: 2.9E-19 score: 69.5
IPR010433	Plant specific eukaryotic initiation factor 4B	PANTHER	PTHR32091	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B	coord: 53..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..36
None	No IPR available	PANTHER	PTHR32091:SF17	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3	coord: 53..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009330.1	Lsi11G009330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003743	translation initiation factor activity