Lsi11G009250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G009250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	JHL23J11.5 protein
Location	chr11: 13093835 .. 13094389 (+)
RNA-Seq Expression	Lsi11G009250
Synteny	Lsi11G009250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTTCACCTTCATCTTCAACCTCCATTTCTAGGTCACACTACAACATCCACAAACTCTTCCTCCTCTGCAACTACATCCTCCTCGGCGCAGCTTCCAGCTGCATTTTCCTTACTCTCTCCCTCCGTCTCGTCCCTTCCGTTTGCGGCTTCTTCATCATCTTCCTCCATGCCTTCACCATCGCCGGTGCCGTCTCTGGCTGCGCCATGGCCTCTGCCACTACCGGCCGATGGTTCGGTGTCCACATGGTTTTTACCGTCCTCACCGCCATCTTCCAAGGCTCTGTCACCGTGCTAGTCTTCACTAGAACCGGTGATTTCCTTGGTGAATTGAAATCATATGTTCGAGAGGAAGACGGATCGGTGATTTTGAAATTGGGCGGCGGATTGAGTGGGTTGATCTTCTGTTTGGAGTGGATTGTTCTGGTTCTTGCGTTTTGTTTGAAGTATTATTTGTATGTTGAAGGAAATGGAAGTGGTGAGGGTTTGAAGAGGAGTGGTAAGGTTCAACAATTTGAAGATTCAACTTGGGCAGCACCATTCCCTGTTTAG

mRNA sequence

ATGGGCTTTTCACCTTCATCTTCAACCTCCATTTCTAGGTCACACTACAACATCCACAAACTCTTCCTCCTCTGCAACTACATCCTCCTCGGCGCAGCTTCCAGCTGCATTTTCCTTACTCTCTCCCTCCGTCTCGTCCCTTCCGTTTGCGGCTTCTTCATCATCTTCCTCCATGCCTTCACCATCGCCGGTGCCGTCTCTGGCTGCGCCATGGCCTCTGCCACTACCGGCCGATGGTTCGGTGTCCACATGGTTTTTACCGTCCTCACCGCCATCTTCCAAGGCTCTGTCACCGTGCTAGTCTTCACTAGAACCGGTGATTTCCTTGGTGAATTGAAATCATATGTTCGAGAGGAAGACGGATCGGTGATTTTGAAATTGGGCGGCGGATTGAGTGGGTTGATCTTCTGTTTGGAGTGGATTGTTCTGGTTCTTGCGTTTTGTTTGAAGTATTATTTGTATGTTGAAGGAAATGGAAGTGGTGAGGGTTTGAAGAGGAGTGGTAAGGTTCAACAATTTGAAGATTCAACTTGGGCAGCACCATTCCCTGTTTAG

Coding sequence (CDS)

ATGGGCTTTTCACCTTCATCTTCAACCTCCATTTCTAGGTCACACTACAACATCCACAAACTCTTCCTCCTCTGCAACTACATCCTCCTCGGCGCAGCTTCCAGCTGCATTTTCCTTACTCTCTCCCTCCGTCTCGTCCCTTCCGTTTGCGGCTTCTTCATCATCTTCCTCCATGCCTTCACCATCGCCGGTGCCGTCTCTGGCTGCGCCATGGCCTCTGCCACTACCGGCCGATGGTTCGGTGTCCACATGGTTTTTACCGTCCTCACCGCCATCTTCCAAGGCTCTGTCACCGTGCTAGTCTTCACTAGAACCGGTGATTTCCTTGGTGAATTGAAATCATATGTTCGAGAGGAAGACGGATCGGTGATTTTGAAATTGGGCGGCGGATTGAGTGGGTTGATCTTCTGTTTGGAGTGGATTGTTCTGGTTCTTGCGTTTTGTTTGAAGTATTATTTGTATGTTGAAGGAAATGGAAGTGGTGAGGGTTTGAAGAGGAGTGGTAAGGTTCAACAATTTGAAGATTCAACTTGGGCAGCACCATTCCCTGTTTAG

Protein sequence

MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAFTIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREEDGSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAAPFPV

Homology

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BLAST of Lsi11G009250 vs. ExPASy TrEMBL
Match: A0A5A7UCF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00280 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.8e-94
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTS+SRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSVSRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGNG+GEGLKRS KVQQFEDSTWAA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGNGEGLKRSAKVQQFEDSTWAA 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. ExPASy TrEMBL
Match: A0A5D3DJ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold65819G00010 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 177/185 (95.68%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTS+SRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSVSRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGN-GSGEGLKRSGKVQQFEDSTWA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGN G+GEGLKRS KVQQFEDSTWA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGGNGEGLKRSAKVQQFEDSTWA 180

Query: 181 APFPV 185
           APFPV
Sbjct: 181 APFPV 185

[Close]

BLAST of Lsi11G009250 vs. ExPASy TrEMBL
Match: A0A1S3B526 (uncharacterized protein LOC103485869 OS=Cucumis melo OX=3656 GN=LOC103485869 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 177/185 (95.68%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTS+SRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSVSRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGN-GSGEGLKRSGKVQQFEDSTWA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGN G+GEGLKRS KVQQFEDSTWA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGGNGEGLKRSAKVQQFEDSTWA 180

Query: 181 APFPV 185
           APFPV
Sbjct: 181 APFPV 185

[Close]

BLAST of Lsi11G009250 vs. ExPASy TrEMBL
Match: A0A0A0LHB3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083760 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.6e-92
Identity = 175/184 (95.11%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTSIS SHYNIHKLFLLCNYILLGAASSCIFLTLSLRL+PSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSISSSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLLPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRT DFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTADFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGNG+GEGLKRS KVQQFEDSTWAA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGNGEGLKRSAKVQQFEDSTWAA 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. ExPASy TrEMBL
Match: A0A6J1K9N5 (uncharacterized protein LOC111491920 OS=Cucurbita maxima OX=3661 GN=LOC111491920 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.9e-87
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG S SSSTSISR+HYNIH LFLLCNY+LLGAASSCIFLTLSLRL+PSVCGFFIIFLHAF
Sbjct: 1   MGLSTSSSTSISRAHYNIHNLFLLCNYVLLGAASSCIFLTLSLRLLPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGA+SGCAMASA TGRW+GVHMVFTVLTAIFQGS+TVLV+TRT +FLGELKSYVREE 
Sbjct: 61  TIAGAISGCAMASAATGRWYGVHMVFTVLTAIFQGSLTVLVYTRTANFLGELKSYVREES 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           G+VILKL GGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGE LKRSGKVQQFEDS WA 
Sbjct: 121 GTVILKLSGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEDLKRSGKVQQFEDSKWAP 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. NCBI nr
Match: KAA0051315.1 (uncharacterized protein E6C27_scaffold55G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 7.9e-94
Identity = 177/184 (96.20%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTS+SRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSVSRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGNG+GEGLKRS KVQQFEDSTWAA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGNGEGLKRSAKVQQFEDSTWAA 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. NCBI nr
Match: XP_038890643.1 (uncharacterized protein LOC120080148 [Benincasa hispida])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA TGRWFGVHMVFTVLTAIFQGSVTVLVFTRT DFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASAATGRWFGVHMVFTVLTAIFQGSVTVLVFTRTSDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYY+YVEGNGS EGLKRSGKVQQFEDSTWAA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYMYVEGNGSVEGLKRSGKVQQFEDSTWAA 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. NCBI nr
Match: XP_008441816.1 (PREDICTED: uncharacterized protein LOC103485869 [Cucumis melo] >TYK23420.1 uncharacterized protein E5676_scaffold65819G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 177/185 (95.68%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTS+SRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSVSRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGN-GSGEGLKRSGKVQQFEDSTWA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGN G+GEGLKRS KVQQFEDSTWA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGGNGEGLKRSAKVQQFEDSTWA 180

Query: 181 APFPV 185
           APFPV
Sbjct: 181 APFPV 185

[Close]

BLAST of Lsi11G009250 vs. NCBI nr
Match: XP_004138889.1 (uncharacterized protein LOC101217347 [Cucumis sativus] >KGN61330.1 hypothetical protein Csa_006653 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.3e-92
Identity = 175/184 (95.11%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG SPSSSTSIS SHYNIHKLFLLCNYILLGAASSCIFLTLSLRL+PSVCGFFIIFLHAF
Sbjct: 1   MGLSPSSSTSISSSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLLPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGAVSGCAMASA+TGRWFGVHMVFTVLTAIFQGSVTVLVFTRT DFLGELKSYVREED
Sbjct: 61  TIAGAVSGCAMASASTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTADFLGELKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           GSVILKLGGGLSGLIFCLEW+VLVLAFCLKYY+YVEGNG+GEGLKRS KVQQFEDSTWAA
Sbjct: 121 GSVILKLGGGLSGLIFCLEWVVLVLAFCLKYYMYVEGNGNGEGLKRSAKVQQFEDSTWAA 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. NCBI nr
Match: XP_022996789.1 (uncharacterized protein LOC111491920 [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 165/184 (89.67%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG S SSSTSISR+HYNIH LFLLCNY+LLGAASSCIFLTLSLRL+PSVCGFFIIFLHAF
Sbjct: 1   MGLSTSSSTSISRAHYNIHNLFLLCNYVLLGAASSCIFLTLSLRLLPSVCGFFIIFLHAF 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIAGA+SGCAMASA TGRW+GVHMVFTVLTAIFQGS+TVLV+TRT +FLGELKSYVREE 
Sbjct: 61  TIAGAISGCAMASAATGRWYGVHMVFTVLTAIFQGSLTVLVYTRTANFLGELKSYVREES 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFEDSTWAA 180
           G+VILKL GGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGE LKRSGKVQQFEDS WA 
Sbjct: 121 GTVILKLSGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEDLKRSGKVQQFEDSKWAP 180

Query: 181 PFPV 185
           PFPV
Sbjct: 181 PFPV 184

[Close]

BLAST of Lsi11G009250 vs. TAIR 10
Match: AT5G16250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 234.2 bits (596), Expect = 8.5e-62
Identity = 126/185 (68.11%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MGF  SSS+ +  SHY+ HK+FL  NYILLGAASSCIFLTLSLRL+PS+CGF +I LHA 
Sbjct: 1   MGFI-SSSSPVEESHYHTHKIFLFSNYILLGAASSCIFLTLSLRLIPSICGFLLILLHAT 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIA AVSGCA AS    RW+  HMV TVLTAIFQGSV+VL+FT T  FLG LKSYVREED
Sbjct: 61  TIAAAVSGCAAASCGRNRWYAAHMVATVLTAIFQGSVSVLIFTNTSKFLGSLKSYVREED 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFED-STWA 180
            +VILKLGGGL  +IFCL+WIVLV AF LKYY YV+G G G  +KR+GKVQ  E+   W 
Sbjct: 121 AAVILKLGGGLCIVIFCLDWIVLVCAFFLKYYAYVDG-GDGVAMKRTGKVQSEENPKDWP 180

Query: 181 APFPV 185
            PF V
Sbjct: 181 WPFQV 183

[Close]

BLAST of Lsi11G009250 vs. TAIR 10
Match: AT3G02640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16250.1); Has 96 Blast hits to 96 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 228.8 bits (582), Expect = 3.6e-60
Identity = 119/182 (65.38%), Postives = 139/182 (76.37%), Query Frame = 0


Query: 1   MGFSPSSSTSISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAF 60
           MG  P    SI  SHY  HKLFL  NY+LLGA+SSCIFLTLSLRL+PS+CGFF+I LHA 
Sbjct: 1   MGLIPQPQESIQESHYYTHKLFLTANYVLLGASSSCIFLTLSLRLIPSLCGFFLILLHAT 60

Query: 61  TIAGAVSGCAMASATTGRWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREED 120
           TIA AVSGCA AS    RW+  HM+ TVLTAIFQGSV+VL+FT T +FL  L SYVRE++
Sbjct: 61  TIAAAVSGCAAASYGKNRWYAAHMIATVLTAIFQGSVSVLIFTNTSNFLESLNSYVREKE 120

Query: 121 GSVILKLGGGLSGLIFCLEWIVLVLAFCLKYYLYVEGNGSGEGLKRSGKVQQFE---DST 180
            S+ILKL GGL  +IFCLEWIVLVLAF LKYY YV+G+ +G  +KR+GKVQ  E   +S 
Sbjct: 121 ASMILKLAGGLCVVIFCLEWIVLVLAFFLKYYAYVDGDNNGVAMKRTGKVQSEETLKNSP 180

[Close]

BLAST of Lsi11G009250 vs. TAIR 10
Match: AT5G36800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 184.9 bits (468), Expect = 5.9e-47
Identity = 101/151 (66.89%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 11  ISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAFTIAGAVSGCA 70
           +S+S  N H +FLLCNYILLG+ASSCIFLT+SLRL PS+ G  +IFL+  TIA AVSGC+
Sbjct: 3   MSKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCS 62

Query: 71  MASATTG-----RWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREEDGSVIL 130
           + +++T      R +G HMV TVLTAIFQG+V+VL+FTRTGDFL  LKSYVREEDG VIL
Sbjct: 63  IFASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVIL 122

Query: 131 KLGGGLSGLIFCLEWIVLVLAFCLKYYLYVE 157
           KL GGL  L+FCLEWIVLVLAF LKY  Y++
Sbjct: 123 KLSGGLCVLMFCLEWIVLVLAFLLKYSDYLD 153

[Close]

BLAST of Lsi11G009250 vs. TAIR 10
Match: AT5G36710.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 184.9 bits (468), Expect = 5.9e-47
Identity = 101/151 (66.89%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 11  ISRSHYNIHKLFLLCNYILLGAASSCIFLTLSLRLVPSVCGFFIIFLHAFTIAGAVSGCA 70
           +S+S  N H +FLLCNYILLG+ASSCIFLT+SLRL PS+ G  +IFL+  TIA AVSGC+
Sbjct: 3   MSKSKGNTHNIFLLCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCS 62

Query: 71  MASATTG-----RWFGVHMVFTVLTAIFQGSVTVLVFTRTGDFLGELKSYVREEDGSVIL 130
           + +++T      R +G HMV TVLTAIFQG+V+VL+FTRTGDFL  LKSYVREEDG VIL
Sbjct: 63  IFASSTSATASDRLYGSHMVATVLTAIFQGAVSVLIFTRTGDFLRFLKSYVREEDGEVIL 122

Query: 131 KLGGGLSGLIFCLEWIVLVLAFCLKYYLYVE 157
           KL GGL  L+FCLEWIVLVLAF LKY  Y++
Sbjct: 123 KLSGGLCVLMFCLEWIVLVLAFLLKYSDYLD 153

The following BLAST results are available for this feature:

BLAST of Lsi11G009250 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G009250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCF0	3.8e-94	96.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DJ66	9.4e-93	95.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B526	9.4e-93	95.68	uncharacterized protein LOC103485869 OS=Cucumis melo OX=3656 GN=LOC103485869 PE=...	[more]
A0A0A0LHB3	1.6e-92	95.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G083760 PE=4 SV=1	[more]
A0A6J1K9N5	5.9e-87	89.67	uncharacterized protein LOC111491920 OS=Cucurbita maxima OX=3661 GN=LOC111491920...	[more]

BLAST of Lsi11G009250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051315.1	7.9e-94	96.20	uncharacterized protein E6C27_scaffold55G00280 [Cucumis melo var. makuwa]	[more]
XP_038890643.1	3.0e-93	97.28	uncharacterized protein LOC120080148 [Benincasa hispida]	[more]
XP_008441816.1	1.9e-92	95.68	PREDICTED: uncharacterized protein LOC103485869 [Cucumis melo] >TYK23420.1 uncha...	[more]
XP_004138889.1	3.3e-92	95.11	uncharacterized protein LOC101217347 [Cucumis sativus] >KGN61330.1 hypothetical ...	[more]
XP_022996789.1	1.2e-86	89.67	uncharacterized protein LOC111491920 [Cucurbita maxima]	[more]

BLAST of Lsi11G009250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16250.1	8.5e-62	68.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02640.1	3.6e-60	65.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G36800.1	5.9e-47	66.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G36710.1	5.9e-47	66.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34124	F16B3.27 PROTEIN-RELATED	coord: 5..182
None	No IPR available	PANTHER	PTHR34124:SF2	F16B3.27 PROTEIN-RELATED	coord: 5..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009250.1	Lsi11G009250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane