Lsi11G009180 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G009180
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	UPF0047 protein YjbQ
Location	chr11: 12782306 .. 12783279 (-)
RNA-Seq Expression	Lsi11G009180
Synteny	Lsi11G009180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATGCCTACAAAAATTGTCATTCCATTTTGATTTTTTTGATGGACGTGGTTGTGATAGCAGCGTGAAGGCGCGTCATTTCCATGTATCATAGGCGGTTGGGCTTTGCGGATGAGCGGCAACTGTAGGTTGTGTGGGCTCTAGGTTACAAAAAAAAAATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGGTGATTAATTGTTTATCTTTTCCCACCTTATCCAGAATCTCGTATCGATCTCCTGAGGTTTAAATGGTGCCAACTTTTTGTTTTTATTTTATTTCTGTTCATAAGTTTTGGTTGCTTCTTAGTCTAGCTTAGGCCTGTCATCTACACATGTCAGTTTGACTTTTCCGAACAATAGACGAGAATCTTCATGTTATGTAGATACATCCGAAACAATTCTTTTTGTTGCCTTGCTAAAATTATTCATTTCAACAATAATATGATATGCGATTTGTTTTCCTCACATTATTGCTGCTACCGAGTTTGATTTCTATATCAGATAGTGAAGGAAATTGGGCAAGACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTGTAAATCTTCTAATCCCGCTTTTCTATTCTGGAGATTAATGAGTAGTTGGATTTCTCTGTTGAATCATTTGATGATGTCTCAGTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCATTCGTCGCGAGCTATCCCATTTTGA

mRNA sequence

TCCATGCCTACAAAAATTGTCATTCCATTTTGATTTTTTTGATGGACGTGGTTGTGATAGCAGCGTGAAGGCGCGTCATTTCCATGTATCATAGGCGGTTGGGCTTTGCGGATGAGCGGCAACTGTAGGTTGTGTGGGCTCTAGGTTACAAAAAAAAAATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAGTGAAGGAAATTGGGCAAGACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCATTCGTCGCGAGCTATCCCATTTTGA

Coding sequence (CDS)

ATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAGTGAAGGAAATTGGGCAAGACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCATTCGTCGCGAGCTATCCCATTTTGA

Protein sequence

MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPEVSLLSALIICNCHSSRAIPF

Homology

[Close]

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot
Match: P0AF49 (UPF0047 protein YjbQ OS=Escherichia coli O157:H7 OX=83334 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 46  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVR 105
           W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNKIVPE 119
            D E F  + VP+
Sbjct: 62  HDMERFFLRTVPD 73

[Close]

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot
Match: P0AF48 (UPF0047 protein YjbQ OS=Escherichia coli (strain K12) OX=83333 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 46  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVR 105
           W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNKIVPE 119
            D E F  + VP+
Sbjct: 62  HDMERFFLRTVPD 73

[Close]

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot
Match: O14155 (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4A8.02c PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 48  QKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSD 107
           Q+ +TL    +G ++IT  +VK++  +L  F  G  + F+QHTSA+LTINEN+DAD R+D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKL-PELKSFSSGTVNFFIQHTSAALTINENWDADTRAD 64

Query: 108 TETFLNKIVPE 119
               L+KIVPE
Sbjct: 65  MNDILDKIVPE 74

[Close]

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot
Match: P0A2L2 (UPF0047 protein YjbQ OS=Salmonella typhi OX=90370 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 46  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVR 105
           W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKL-SGLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNKIVPE 119
           +D E    K VP+
Sbjct: 62  ADMERHFLKTVPD 73

[Close]

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot
Match: P0A2L1 (UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 46  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVR 105
           W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKL-SGLPPVETGLLHLLLLHTSASLTLNENCDPTVR 61

Query: 106 SDTETFLNKIVPE 119
           +D E    K VP+
Sbjct: 62  ADMERHFLKTVPD 73

[Close]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL
Match: A0A6J1FDC5 (uncharacterized protein LOC111443082 OS=Cucurbita moschata OX=3662 GN=LOC111443082 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL
Match: A0A6J1IIX0 (uncharacterized protein LOC111476694 OS=Cucurbita maxima OX=3661 GN=LOC111476694 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLGSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIG DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGNDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL
Match: A0A5D3D8K7 (UPF0047 protein YjbQ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00070 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 19  MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 78

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENYD+DV+SDTETFLNKIVPE
Sbjct: 79  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPE 136

[Close]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL
Match: A0A1S3BUP9 (UPF0047 protein YjbQ OS=Cucumis melo OX=3656 GN=LOC103493869 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENYD+DV+SDTETFLNKIVPE
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPE 118

[Close]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL
Match: A0A0A0L4Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665660 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.7e-51
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPS MAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSFMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENYD+DV++DTETFLNKIVPE
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPE 118

[Close]

BLAST of Lsi11G009180 vs. NCBI nr
Match: KAG7024064.1 (yjbQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-60
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPEVS 120
           HLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPEVS
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEVS 120

Query: 121 LLSALIICNCHSSR 135
           LLSA IICN H S+
Sbjct: 121 LLSASIICNSHLSK 134

[Close]

BLAST of Lsi11G009180 vs. NCBI nr
Match: XP_022936473.1 (uncharacterized protein LOC111443082 [Cucurbita moschata] >XP_023521112.1 uncharacterized protein LOC111784738 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 6.0e-54
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of Lsi11G009180 vs. NCBI nr
Match: KAG6591177.1 (hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.2 bits (557), Expect = 2.3e-53
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  W +NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWRNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of Lsi11G009180 vs. NCBI nr
Match: XP_022976235.1 (uncharacterized protein LOC111476694 [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLGSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIG DLSEFKCGLAHIFLQHTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGNDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of Lsi11G009180 vs. NCBI nr
Match: XP_008453044.1 (PREDICTED: UPF0047 protein YjbQ [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-51
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           HLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENYD+DV+SDTETFLNKIVPE
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPE 118

[Close]

BLAST of Lsi11G009180 vs. TAIR 10
Match: AT1G21065.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). )

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-34
Identity = 70/108 (64.81%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 11  PLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKE 70
           PLRV+S  +         A   +   S+ +++G KWAQKT+TLPP RRGCHLITPKI+KE
Sbjct: 51  PLRVRSVLT--------PANPATDRASMASSSGAKWAQKTITLPPLRRGCHLITPKILKE 110

Query: 71  IGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE 119
           I +DLS+F CGLAH+FLQHTSASLTINENYD DV++DTETFLN+IVPE
Sbjct: 111 IREDLSDFNCGLAHVFLQHTSASLTINENYDPDVQADTETFLNRIVPE 150

The following BLAST results are available for this feature:

BLAST of Lsi11G009180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0AF49	9.1e-13	49.32	UPF0047 protein YjbQ OS=Escherichia coli O157:H7 OX=83334 GN=yjbQ PE=3 SV=1	[more]
P0AF48	9.1e-13	49.32	UPF0047 protein YjbQ OS=Escherichia coli (strain K12) OX=83333 GN=yjbQ PE=3 SV=1	[more]
O14155	5.9e-12	47.89	UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
P0A2L2	1.1e-10	47.95	UPF0047 protein YjbQ OS=Salmonella typhi OX=90370 GN=yjbQ PE=3 SV=1	[more]
P0A2L1	1.1e-10	47.95	UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700...	[more]

BLAST of Lsi11G009180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDC5	2.9e-54	91.53	uncharacterized protein LOC111443082 OS=Cucurbita moschata OX=3662 GN=LOC1114430...	[more]
A0A6J1IIX0	1.2e-52	90.68	uncharacterized protein LOC111476694 OS=Cucurbita maxima OX=3661 GN=LOC111476694...	[more]
A0A5D3D8K7	1.3e-51	89.83	UPF0047 protein YjbQ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134...	[more]
A0A1S3BUP9	1.3e-51	89.83	UPF0047 protein YjbQ OS=Cucumis melo OX=3656 GN=LOC103493869 PE=3 SV=1	[more]
A0A0A0L4Q6	8.7e-51	88.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665660 PE=3 SV=1	[more]

BLAST of Lsi11G009180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024064.1	2.5e-60	89.55	yjbQ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022936473.1	6.0e-54	91.53	uncharacterized protein LOC111443082 [Cucurbita moschata] >XP_023521112.1 unchar...	[more]
KAG6591177.1	2.3e-53	90.68	hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022976235.1	2.5e-52	90.68	uncharacterized protein LOC111476694 [Cucurbita maxima]	[more]
XP_008453044.1	2.8e-51	89.83	PREDICTED: UPF0047 protein YjbQ [Cucumis melo]	[more]

BLAST of Lsi11G009180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21065.1	2.5e-34	64.81	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001602	Uncharacterised protein family UPF0047	PFAM	PF01894	UPF0047	coord: 63..118 e-value: 9.8E-14 score: 51.5
IPR001602	Uncharacterised protein family UPF0047	PANTHER	PTHR30615	UNCHARACTERIZED PROTEIN YJBQ-RELATED	coord: 21..119
IPR035917	YjbQ-like superfamily	GENE3D	2.60.120.460		coord: 39..126 e-value: 7.7E-19 score: 69.8
IPR035917	YjbQ-like superfamily	SUPERFAMILY	111038	YjbQ-like	coord: 46..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR30615:SF14	SUBFAMILY NOT NAMED	coord: 21..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009180.1	Lsi11G009180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane