Lsi11G008680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribonuclease H
Location	chr11: 11187942 .. 11189770 (-)
RNA-Seq Expression	Lsi11G008680
Synteny	Lsi11G008680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGAGTGAGGTTGGTTTAAGGGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAAATGATATCCTCATTAGCCAATACGATGACAGTTTATTATTTTCATATCATGCTGGGGCAAAAGGTCACTCTAGTGACCAGTGCCCTCATTTCTCCCAGAAGGTACGAGAATTATTAAATTCTCATTTCCTAACGGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGGTTTCTCTGGAGCGAAAGCCATTAACAATCTTTTATAAGGAAAAACCCAGTACTACCACTTCCAAACCAAAACCAATTACCATATAGGTTCCATCTCCATTTGAGTATAAAAGTTCAAAAGCAGTACCATGGAATTATGAATACAAGGTACTTGTTGAGTCCGTACCAGTCCCTATAGACAATATTAATGAAATTGGAGGTACAACACGAAGTGGGAAGTGTTATACGCCATAAGCTTTATTGAAGTGCAATAGCAAGGAAAAAGGAAAAGCCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAAAGGAGCCAACATCTGAAGATGATATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAGTAATTGAACAGTTGGGCAAAACGCATGCTAGAATCTCTATTTTGGCCTTATTGTTATCTTCAGACCTGCATCGCAAAACTCTAATGAATATCCTGAACCAGACTTATGTTCCATCAGACATTACAATAGACAATTTAGACAACATCGTTGGCAGTATAACAGCATCAAGTTCCATAACTTTCACCGATGATTAGATACCAGAAGGCATGGGTCACACAAAGGCCTTGCATATTACAGTTAAGTGCAAGAAATTTGCTGTGGCCAAAGTTTTAGTTGACAATGGCTCTTCTCTGAACATAATACCTATGTCCACATTGGAAAAATTGCTTGTTGATATGTCACACCTCAAATCAAGTACTATGATAGTGAGGGCCTTTGATGGATCGCGCAGTGAAGTGGTTGGGGACATAGAAATCCCTATTCAAATAGGCCTTTGCACCTTCAACATAACTTTCCAGATCATGAACATCAACTCAACCTATAGTTTCCTGTTAGGTCGTCCATGGATTCATTCAGCAGGAGTAGTCCCTTTGTCATTGCACCAATGCCTTAAATTTGTAGTCGATCGCAAGCTAGTGATCGTATCAGGACAATAGGATATTTTTATGTCAAGGCCATCCTCAATGCCATACATAGAAGAAGCGGAAGAAGCTTTTGAATCCTCATTCCAATCTTTCGAGGTTGCAAATGCCACCACTATATACGGAGAAAGAGGAACAAGGAAGCCACGATTTTCAAAGCTACCTTCAAAGGGAAATGGCAGAAGTTTGGATGACTTATTGAATGTGCAAAAAAATATGAAAAGATTTGGTTTGGGATATAAACCAAGCAGGGAAGAAATGATCAGAACACAAAAGCGGGAAAATAAGAATCGAATGATGAATTTTGAGCATCATGAGCCTCGAAGCCAAATGAGTATTCCTCATCTTTACGAATCTTTCAAATTCGCTGGCACAATCCATCCAGAAAGTTTTGAAGTAATGGCTGTCATAGAAGGCAAAGATGAAGAGTATCCCCTAGTCTACTTATGCCCAAAGGATTTTGAGCATAATAATTGGACCGTATTTGAGCTACCGTCAATTGTTAACGATTTATCAAAG

mRNA sequence

ATGTGAGTGAGGTTGGTTTAAGGGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAAATGATATCCTCATTAGCCAATACGATGACAGTTTATTATTTTCATATCATGCTGGGGCAAAAGGTCACTCTAGTGACCAGTGCCCTCATTTCTCCCAGAAGGTACGAGAATTATTAAATTCTCATTTCCTAACGGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGTGCAATAGCAAGGAAAAAGGAAAAGCCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAAAGGAGCCAACATCTGAAGATGATATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAGTTGCAAATGCCACCACTATATACGGAGAAAGAGGAACAAGGAAGCCACGATTTTCAAAGCTACCTTCAAAGGGAAATGGCAGAAGTTTGGATGACTTATTGAATGTGCAAAAAAATATGAAAAGATTTGGTTTGGGATATAAACCAAGCAGGGAAGAAATGATCAGAACACAAAAGCGGGAAAATAAGAATCGAATGATGAATTTTGAGCATCATGAGCCTCGAAGCCAAATGAGTATTCCTCATCTTTACGAATCTTTCAAATTCGCTGGCACAATCCATCCAGAAAGTTTTGAAGTAATGGCTGTCATAGAAGGCAAAGATGAAGAGTATCCCCTAGTCTACTTATGCCCAAAGGATTTTGAGCATAATAATTGGACCGTATTTGAGCTACCGTCAATTGTTAACGATTTATCAAAG

Coding sequence (CDS)

ATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAAATGATATCCTCATTAGCCAATACGATGACAGTTTATTATTTTCATATCATGCTGGGGCAAAAGGTCACTCTAGTGACCAGTGCCCTCATTTCTCCCAGAAGGTACGAGAATTATTAAATTCTCATTTCCTAACGGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGTGCAATAGCAAGGAAAAAGGAAAAGCCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAAAGGAGCCAACATCTGAAGATGATATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAGTTGCAAATGCCACCACTATATACGGAGAAAGAGGAACAAGGAAGCCACGATTTTCAAAGCTACCTTCAAAGGGAAATGGCAGAAGTTTGGATGACTTATTGAATGTGCAAAAAAATATGAAAAGATTTGGTTTGGGATATAAACCAAGCAGGGAAGAAATGATCAGAACACAAAAGCGGGAAAATAAGAATCGAATGATGAATTTTGAGCATCATGAGCCTCGAAGCCAAATGAGTATTCCTCATCTTTACGAATCTTTCAAATTCGCTGGCACAATCCATCCAGAAAGTTTTGAAGTAATGGCTGTCATAGAAGGCAAAGATGAAGAGTATCCCCTAGTCTACTTATGCCCAAAGGATTTTGAGCATAATAATTGGACCGTATTTGAGCTACCGTCAATTGTTAACGATTTATCAAAG

Protein sequence

MITSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHEPRSQMSIPHLYESFKFAGTIHPESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK

Homology

[Close]

BLAST of Lsi11G008680 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-25
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 0


Query: 126  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNV 185
            EV E   E   Q F         ++ANATT++G+ G  KPR  +   KG+  SLD LL +
Sbjct: 962  EVAEEAFESSFQSF---------EIANATTLHGKFGRPKPRLLETAFKGDNGSLDKLLRM 1021

Query: 186  QKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH- 245
             KN K+FGLGYKPSR ++IR +  E   R+  FE+ E    +  +P L  SF+ AGTIH 
Sbjct: 1022 AKNTKKFGLGYKPSRGDIIRVRSLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQ 1081

Query: 246  --PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS 289
               ES  V AV E +++  P VYLCP  FE +NW+V +LPS VN+ S
Sbjct: 1082 EYDESSVVAAVTEEREQVGPFVYLCPDGFELSNWSVIKLPSFVNNKS 1119

[Close]

BLAST of Lsi11G008680 vs. ExPASy TrEMBL
Match: A0A6J1D1K4 (uncharacterized protein LOC111016192 OS=Momordica charantia OX=3673 GN=LOC111016192 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-23
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR  
Sbjct: 182 FEIANATTLHGKFGRPKPRLLETAFKGDNASLDKLLMMAKNTKKFGLGYKPSRGDIIRVW 241

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E    + ++P L  SF+ AG IH    ES  V  V E +++  P V
Sbjct: 242 SLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGIIHQEYDESSVVAGVTEEREQVGPFV 301

Query: 268 YLCPKDFEHNNWTVFELPSIVNDLS 289
           Y CP  FE +NW+V ELPS VN+ S
Sbjct: 302 YPCPDGFELSNWSVLELPSFVNNKS 326

[Close]

BLAST of Lsi11G008680 vs. ExPASy TrEMBL
Match: A0A6J1DR66 (uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022791 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.5e-23
Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ NATT++G+ G  K R  +   KG+  SLD LL + KN K+FGLGYK SR ++IR +
Sbjct: 391 FEIENATTLHGKFGRPKSRLLETAFKGDNESLDKLLRMAKNTKKFGLGYKLSRGDIIRVR 450

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E    +  +P L  SF+ AGTIH    ES  V AV E +++  P V
Sbjct: 451 SLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFV 510

Query: 268 YLCPKDFEHNNWTVFELPSIVNDLSK 290
           YLCP  FE +NW+V ELPS VN+  K
Sbjct: 511 YLCPDGFELSNWSVIELPSFVNNKXK 536

[Close]

BLAST of Lsi11G008680 vs. ExPASy TrEMBL
Match: A0A6J1DR66 (uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022791 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-03
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 88  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSD 147
           E+ S  +  K    +KGKAKL + +   + E ++V++   K+P SE++ QEFL+LVKQS+
Sbjct: 103 EKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDVSPKQPVSEEETQEFLKLVKQSE 162

Query: 148 YKV 151
           YKV
Sbjct: 163 YKV 165

HSP 2 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 148  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
            +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +
Sbjct: 877  FEIANATTLHGKFGRPKPRLLETAFKGDNESLDKLLRMAKNTKKFGLGYKPSRGDIIRVR 936

Query: 208  KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE---SFEVMAVIEGKDEEYPLV 267
              E   R+  FE+ E    + ++P L  SF+ AGTIH E   S  V AV E +++  P V
Sbjct: 937  SLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGTIHQEYDGSSVVAAVTEEREQVRPFV 996

Query: 268  YLCPKDFEHNNWTV 278
            Y CP  FE +NW+V
Sbjct: 997  YPCPDGFELSNWSV 1010

[Close]

BLAST of Lsi11G008680 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 3   TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVREL 62
           T  EELF IL  +  +    L  ++    YD+SL   +HAGAKGH+ +QC  F   V+EL
Sbjct: 397 TPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRMIVQEL 456

Query: 63  LNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS 97
           L+S  LTV+      S ++  I+  E+ S  E S
Sbjct: 457 LDSKILTVA-----NSHQKKGINVVEDVSVAEGS 485

HSP 2 Score: 105.1 bits (261), Expect = 4.8e-19
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ANATT++G+ G  KPR  +   K N  SLD LL + KN +RFGLGYKP+R ++IR +
Sbjct: 407 FEIANATTLHGKFGRPKPRLLEAAFKVNNGSLDKLLRMAKNTRRFGLGYKPNRGDIIRVR 466

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E   S+ ++P L  S + AGTIH    ES    AV E +++  P V
Sbjct: 467 SMEKAKRLSRFENGERDYSRRTVPPLSHSLRSAGTIHQEYDESSVAAAVTEEREQVEPFV 526

Query: 268 YLCPKDFEHNNWTV 278
           Y CP  F+ +NW+V
Sbjct: 527 YPCPDGFKLSNWSV 540

[Close]

BLAST of Lsi11G008680 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-24
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 0


Query: 126  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNV 185
            EV E   E   Q F         ++ANATT++G+ G  KPR  +   KG+  SLD LL +
Sbjct: 962  EVAEEAFESSFQSF---------EIANATTLHGKFGRPKPRLLETAFKGDNGSLDKLLRM 1021

Query: 186  QKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH- 245
             KN K+FGLGYKPSR ++IR +  E   R+  FE+ E    +  +P L  SF+ AGTIH 
Sbjct: 1022 AKNTKKFGLGYKPSRGDIIRVRSLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQ 1081

Query: 246  --PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS 289
               ES  V AV E +++  P VYLCP  FE +NW+V +LPS VN+ S
Sbjct: 1082 EYDESSVVAAVTEEREQVGPFVYLCPDGFELSNWSVIKLPSFVNNKS 1119

[Close]

BLAST of Lsi11G008680 vs. NCBI nr
Match: XP_022147181.1 (uncharacterized protein LOC111016192 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 6.7e-23
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR  
Sbjct: 182 FEIANATTLHGKFGRPKPRLLETAFKGDNASLDKLLMMAKNTKKFGLGYKPSRGDIIRVW 241

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E    + ++P L  SF+ AG IH    ES  V  V E +++  P V
Sbjct: 242 SLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGIIHQEYDESSVVAGVTEEREQVGPFV 301

Query: 268 YLCPKDFEHNNWTVFELPSIVNDLS 289
           Y CP  FE +NW+V ELPS VN+ S
Sbjct: 302 YPCPDGFELSNWSVLELPSFVNNKS 326

[Close]

BLAST of Lsi11G008680 vs. NCBI nr
Match: XP_022155744.1 (uncharacterized protein LOC111022791 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-22
Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ NATT++G+ G  K R  +   KG+  SLD LL + KN K+FGLGYK SR ++IR +
Sbjct: 391 FEIENATTLHGKFGRPKSRLLETAFKGDNESLDKLLRMAKNTKKFGLGYKLSRGDIIRVR 450

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E    +  +P L  SF+ AGTIH    ES  V AV E +++  P V
Sbjct: 451 SLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFV 510

Query: 268 YLCPKDFEHNNWTVFELPSIVNDLSK 290
           YLCP  FE +NW+V ELPS VN+  K
Sbjct: 511 YLCPDGFELSNWSVIELPSFVNNKXK 536

[Close]

BLAST of Lsi11G008680 vs. NCBI nr
Match: XP_022155744.1 (uncharacterized protein LOC111022791 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-02
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 88  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSD 147
           E+ S  +  K    +KGKAKL + +   + E ++V++   K+P SE++ QEFL+LVKQS+
Sbjct: 103 EKASEKKKEKVEEDKKGKAKLHEDVHDELVEAIVVKDVSPKQPVSEEETQEFLKLVKQSE 162

Query: 148 YKV 151
           YKV
Sbjct: 163 YKV 165

HSP 2 Score: 112.5 bits (280), Expect = 6.3e-21
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 148  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
            +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +
Sbjct: 877  FEIANATTLHGKFGRPKPRLLETAFKGDNESLDKLLRMAKNTKKFGLGYKPSRGDIIRVR 936

Query: 208  KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE---SFEVMAVIEGKDEEYPLV 267
              E   R+  FE+ E    + ++P L  SF+ AGTIH E   S  V AV E +++  P V
Sbjct: 937  SLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGTIHQEYDGSSVVAAVTEEREQVRPFV 996

Query: 268  YLCPKDFEHNNWTV 278
            Y CP  FE +NW+V
Sbjct: 997  YPCPDGFELSNWSV 1010

[Close]

BLAST of Lsi11G008680 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-04
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 3   TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVREL 62
           T  EELF IL  +  +    L  ++    YD+SL   +HAGAKGH+ +QC  F   V+EL
Sbjct: 397 TPMEELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRMIVQEL 456

Query: 63  LNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS 97
           L+S  LTV+      S ++  I+  E+ S  E S
Sbjct: 457 LDSKILTVA-----NSHQKKGINVVEDVSVAEGS 485

HSP 2 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 148 YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQ 207
           +++ANATT++G+ G  KPR  +   K N  SLD LL + KN +RFGLGYKP+R ++IR +
Sbjct: 407 FEIANATTLHGKFGRPKPRLLEAAFKVNNGSLDKLLRMAKNTRRFGLGYKPNRGDIIRVR 466

Query: 208 KRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLV 267
             E   R+  FE+ E   S+ ++P L  S + AGTIH    ES    AV E +++  P V
Sbjct: 467 SMEKAKRLSRFENGERDYSRRTVPPLSHSLRSAGTIHQEYDESSVAAAVTEEREQVEPFV 526

Query: 268 YLCPKDFEHNNWTV 278
           Y CP  F+ +NW+V
Sbjct: 527 YPCPDGFKLSNWSV 540

The following BLAST results are available for this feature:

BLAST of Lsi11G008680 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G008680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D099	5.9e-25	44.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1D1K4	3.2e-23	45.52	uncharacterized protein LOC111016192 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DR66	5.5e-23	45.21	uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DR66	4.9e-03	42.86	uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CNY7	1.2e-04	38.30	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of Lsi11G008680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147189.1	1.2e-24	44.31	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022147181.1	6.7e-23	45.52	uncharacterized protein LOC111016192 [Momordica charantia]	[more]
XP_022155744.1	1.1e-22	45.21	uncharacterized protein LOC111022791 [Momordica charantia]	[more]
XP_022155744.1	1.0e-02	42.86	uncharacterized protein LOC111022791 [Momordica charantia]	[more]
XP_022143495.1	2.4e-04	38.30	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of Lsi11G008680 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008680.1	Lsi11G008680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process