Lsi11G008670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PSI subunit V
Location	chr11: 11145491 .. 11147064 (-)
RNA-Seq Expression	Lsi11G008670
Synteny	Lsi11G008670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGATAAGGTTATGTGGCAAGTTTCATCCAATGAGAAGAGAGAGGTTTGATCAACCACAGCCTCCCACAAATTTCCATGGCCAATGACCACCAACAACAAAAACTTAAACTAACCCCCAAAACCAAATCTAAAAATCTCACCTCATTTTTCTTCTCTGCCACTGATCCTTTCACAAGCCGAAGGCAGCAGAAGCAAAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCAAGCTTCGCTTCATCCAACACCAGAGCTTTGATCTCTCCCAAAGGCCTCTCCGCTTCGCCGCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCGTCCAAGCTGATAAGGTAATCTAACCAACCCCATTTCTCAATTCTACATCATCTGCCTCTCTTTGGAGCTTTTAAGATATATATATATATATATATATATACACACTATTTCAAGGGATATTAACTTACAATCAAGTTTAAAAGATGTGTTTGGGGGTGCTCTTATTATTATATGTGTGCATGGCAGTGTGATGAAAGGAGTTAATCAGAGAATATAAATAAAGATATACAAATGATAAGTGCCAGCATAAGTATAGCTAGCATGTACACCTTCTATTGAGGTCGGAGGATATACAAATGAGAACTGTGTTGCAATACGTTAGAGAAAAGATGCGTCAGTGAAGAGAAGTGTCAGGAAAATTGGTGCAAAAAATGTATGTGAACAGAGTAATTAGGGAAAAAAAGTATTAAAAGTGGATTATAGAAAAAACATGCCATGCTTCTTTGAGAAGCACTTTTCCACATGTTAATAAGCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTCACCTCAAGCCCACTGATAGCATGGTATCTATCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATTGAAGTGGGCCTGGCCCACGGTTTTTTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCCGGCTCACTGGCTGCCGGTGGTCTCATTGTCATTTTAAGCATCTGCTTGACAATGTATGGTGCTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACTGGCCGGAAGAAGACCCCTGATCAGCTGCAAACAGCCGATGGGTGGGCAAAATTCTCCGGCGGGTTCTTCTTTGGGGGGATCTCTGGTGTTATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAGATTTTGTATCATTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTTCTGCCAAACCTCTTTGTTAGATCCTTTGTGATTGCATATTGATTTCCCTTTTGGAACTGTTATGTATGTACCCTCCTTCCATTTGCTTCTTCACAAACAATAGCTTCTGTGACACTGCATTATAAATTGGTAGGAGAAGAATATCAACAATACTTTGATACTA

mRNA sequence

GGGATAAGGTTATGTGGCAAGTTTCATCCAATGAGAAGAGAGAGGTTTGATCAACCACAGCCTCCCACAAATTTCCATGGCCAATGACCACCAACAACAAAAACTTAAACTAACCCCCAAAACCAAATCTAAAAATCTCACCTCATTTTTCTTCTCTGCCACTGATCCTTTCACAAGCCGAAGGCAGCAGAAGCAAAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCAAGCTTCGCTTCATCCAACACCAGAGCTTTGATCTCTCCCAAAGGCCTCTCCGCTTCGCCGCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCGTCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTCACCTCAAGCCCACTGATAGCATGGTATCTATCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATTGAAGTGGGCCTGGCCCACGGTTTTTTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCCGGCTCACTGGCTGCCGGTGGTCTCATTGTCATTTTAAGCATCTGCTTGACAATGTATGGTGCTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACTGGCCGGAAGAAGACCCCTGATCAGCTGCAAACAGCCGATGGGTGGGCAAAATTCTCCGGCGGGTTCTTCTTTGGGGGGATCTCTGGTGTTATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAGATTTTGTATCATTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTTCTGCCAAACCTCTTTGTTAGATCCTTTGTGATTGCATATTGATTTCCCTTTTGGAACTGTTATGTATGTACCCTCCTTCCATTTGCTTCTTCACAAACAATAGCTTCTGTGACACTGCATTATAAATTGGTAGGAGAAGAATATCAACAATACTTTGATACTA

Coding sequence (CDS)

ATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCAAGCTTCGCTTCATCCAACACCAGAGCTTTGATCTCTCCCAAAGGCCTCTCCGCTTCGCCGCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCGTCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTCACCTCAAGCCCACTGATAGCATGGTATCTATCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATTGAAGTGGGCCTGGCCCACGGTTTTTTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCCGGCTCACTGGCTGCCGGTGGTCTCATTGTCATTTTAAGCATCTGCTTGACAATGTATGGTGCTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACTGGCCGGAAGAAGACCCCTGATCAGCTGCAAACAGCCGATGGGTGGGCAAAATTCTCCGGCGGGTTCTTCTTTGGGGGGATCTCTGGTGTTATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAG

Protein sequence

MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK

Homology

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BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot
Match: Q39654 (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=3659 GN=PSAL PE=2 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 5.8e-115
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot
Match: Q9SUI4 (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAL PE=1 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.8e-92
Identity = 173/219 (79.00%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAVQADKPTYQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RAV++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG +SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot
Match: Q41385 (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAL PE=1 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 7.7e-91
Identity = 169/219 (77.17%), Postives = 188/219 (85.84%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT--RTHSFTIRAVQADKPTYQ 60
           MA  TSP+ASQL S F    T+AL+ PKG+S   LR  P+  R  SFT+RA++ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG ASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPYY K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

[Close]

BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot
Match: P23993 (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAL PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.9e-79
Identity = 153/218 (70.18%), Postives = 176/218 (80.73%), Query Frame = 0


Query: 1   MATA-TSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQV 60
           MATA   P+ASQ+  S       A   P+G+S + L R P     F ++AV++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKS-----GLACSKPRGMSGASLTRRP----RFVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL+ ILS+CLTMYG ASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPY+ K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

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BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot
Match: Q6B8P4 (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui OX=285951 GN=psaL PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-33
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 60  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 119
           IQ  N DPF+G+L TPV++S      L+NLPAYR  +SPLLRG+E+G+AHG+FLVGPF K
Sbjct: 5   IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDK 64

Query: 120 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQL 179
            GPLRNT  A  +G L+A GLI+IL++CL+MYG  SF++ +                D L
Sbjct: 65  LGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDD--------------AKDLL 124

Query: 180 QTADGWAKFSGGFFFGGISGVIWAYFLL 208
           QT +GW +F+ GF  G + G  +AY LL
Sbjct: 125 QTTEGWGQFTAGFLVGAVGGSGFAYLLL 138

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BLAST of Lsi11G008670 vs. ExPASy TrEMBL
Match: A0A1S3B555 (PSI subunit V OS=Cucumis melo OX=3656 GN=LOC103485887 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 214/217 (98.62%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. ExPASy TrEMBL
Match: A0A0A0LHJ8 (PSI subunit V OS=Cucumis sativus OX=3659 GN=Csa_2G074240 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.7e-113
Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. ExPASy TrEMBL
Match: A0A6J1D7U0 (PSI subunit V OS=Momordica charantia OX=3673 GN=LOC111018169 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRR+P RTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKK PDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKAPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Lsi11G008670 vs. ExPASy TrEMBL
Match: A0A6J1HKH3 (PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111465381 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 209/217 (96.31%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSS+F SSNTRALI+PKGLSASPLRR+P RTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Lsi11G008670 vs. ExPASy TrEMBL
Match: A0A6J1FBZ4 (PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111444030 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.1e-111
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MA+ATSPIASQLSS+F SSNTRALI+PKGLS SPLRRIP RTHSFTIRA+QADKPTYQVI
Sbjct: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Lsi11G008670 vs. NCBI nr
Match: XP_008441854.1 (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 3.1e-113
Identity = 214/217 (98.62%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. NCBI nr
Match: XP_038889551.1 (photosystem I reaction center subunit XI, chloroplastic [Benincasa hispida])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKK PD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKNPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. NCBI nr
Match: NP_001267647.1 (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus] >KGN61263.1 hypothetical protein Csa_006403 [Cucumis sativus] >BAA11677.1 subunit of photosystem I [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. NCBI nr
Match: XP_022149833.1 (photosystem I reaction center subunit XI, chloroplastic [Momordica charantia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.4e-112
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRR+P RTHSFTIRA+QADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYG ASFNEGEPSTAPSLTLTGRKK PDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKAPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of Lsi11G008670 vs. NCBI nr
Match: Q39654.1 (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor [Cucumis sativus] >BAA09047.1 PsaL [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 4.4e-112
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAVQADKPTYQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRA+QADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYG ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Lsi11G008670 vs. TAIR 10
Match: AT4G12800.1 (photosystem I subunit l )

HSP 1 Score: 340.1 bits (871), Expect = 1.3e-93
Identity = 173/219 (79.00%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAVQADKPTYQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RAV++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGAASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG +SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

The following BLAST results are available for this feature:

BLAST of Lsi11G008670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39654	5.8e-115	97.24	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q9SUI4	1.8e-92	79.00	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41385	7.7e-91	77.17	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=...	[more]
P23993	3.9e-79	70.18	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=45...	[more]
Q6B8P4	2.5e-33	50.00	Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui ...	[more]

BLAST of Lsi11G008670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B555	1.5e-113	98.62	PSI subunit V OS=Cucumis melo OX=3656 GN=LOC103485887 PE=3 SV=1	[more]
A0A0A0LHJ8	5.7e-113	97.70	PSI subunit V OS=Cucumis sativus OX=3659 GN=Csa_2G074240 PE=3 SV=1	[more]
A0A6J1D7U0	1.6e-112	97.24	PSI subunit V OS=Momordica charantia OX=3673 GN=LOC111018169 PE=3 SV=1	[more]
A0A6J1HKH3	6.3e-112	96.31	PSI subunit V OS=Cucurbita maxima OX=3661 GN=LOC111465381 PE=3 SV=1	[more]
A0A6J1FBZ4	4.1e-111	95.85	PSI subunit V OS=Cucurbita moschata OX=3662 GN=LOC111444030 PE=3 SV=1	[more]

BLAST of Lsi11G008670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441854.1	3.1e-113	98.62	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
XP_038889551.1	1.2e-112	98.16	photosystem I reaction center subunit XI, chloroplastic [Benincasa hispida]	[more]
NP_001267647.1	1.2e-112	97.70	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus] >KGN61...	[more]
XP_022149833.1	3.4e-112	97.24	photosystem I reaction center subunit XI, chloroplastic [Momordica charantia]	[more]
Q39654.1	4.4e-112	97.24	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]

BLAST of Lsi11G008670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12800.1	1.3e-93	79.00	photosystem I subunit l	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 e-value: 1.7E-58 score: 196.6
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	GENE3D	1.20.1240.10	Photosystem I PsaL, reaction centre subunit XI	coord: 54..217 e-value: 3.7E-73 score: 246.2
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	SUPERFAMILY	81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216
IPR022980	Photosystem I, reaction centre subunit XI	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 1..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008670.1	Lsi11G008670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I