Lsi11G008380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G008380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 10454580 .. 10454923 (+)
RNA-Seq ExpressionLsi11G008380
SyntenyLsi11G008380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTCAAAAGCTTATTACAATATCAGTTGTTGTCTTGATGATATTCACTTGTTTAGTATCAACAAGTATATTCTCTTTACTCATATAACTCCTCTAATTCCAATAATATGTTTTTTTTTTCTTTTTTTGTTATACAATCTTTTCAACAATTATGTAATCTTTGGTAACATGGCAGCGAAAGAAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTAACACTTATGACGACGAGTCATGTTATGATGATTGTGTTCGAGAGAATAATGGTGCTAGATTTTGTTATCCAAAGCTACCTAACATTTCTGGTGAAAAAGATTATTGTTGCAATATTTGA

mRNA sequence

ATGGCAACTCAAAAGCTTATTACAATATCAGTTGTTGTCTTGATGATATTCACTTGTTTAGTATCAACAACGAAAGAAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTAACACTTATGACGACGAGTCATGTTATGATGATTGTGTTCGAGAGAATAATGGTGCTAGATTTTGTTATCCAAAGCTACCTAACATTTCTGGTGAAAAAGATTATTGTTGCAATATTTGA

Coding sequence (CDS)

ATGGCAACTCAAAAGCTTATTACAATATCAGTTGTTGTCTTGATGATATTCACTTGTTTAGTATCAACAACGAAAGAAGACGTGTTGAACGTGCATTGTGTTCGGCCATGTTCTAACACTTATGACGACGAGTCATGTTATGATGATTGTGTTCGAGAGAATAATGGTGCTAGATTTTGTTATCCAAAGCTACCTAACATTTCTGGTGAAAAAGATTATTGTTGCAATATTTGA

Protein sequence

MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFCYPKLPNISGEKDYCCNI
Homology
BLAST of Lsi11G008380 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          MATQKL TIS+VVLMIF C+ STTK DVLNVHCVRPCS+TYDDESCY+DC++EN GA FC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPNISGEKDYCCNI 78
          YPKLP  S +KD CCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

BLAST of Lsi11G008380 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-25
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          MATQKL TIS+VVL+IF C+VSTTK DVLNVHCVRPC +TYDDESCY+DC+REN GA FC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPNISGEKDYCCN 77
          YPKLP  S +KD CCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of Lsi11G008380 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-17
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 23 TTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFCYPKLPNISGEKDYCCNI 78
          T K D+LNVHCVRPCS+TYDDESCY+DC+REN GA FCYPKLP  S +KD CCN+
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCNV 54

BLAST of Lsi11G008380 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.1e-08
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          M TQKL  +S++V + F+C  S+ + D L  +CV PCSN   D  C   C+ ++ GA FC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLPNISGEKDYCCN 77
           PKLP IS  K  CCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

BLAST of Lsi11G008380 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          M T+KL+ + V + ++  C V+ ++   L  +C+RPCS TY   SCY DC   N G   C
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGL-WNCIRPCSETYKSLSCYVDCGALNKGTGAC 60

Query: 61 YPKLPNISGEKDYCC 76
           PK P +S E   CC
Sbjct: 61 IPKRP-VSDEYVCCC 73

BLAST of Lsi11G008380 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          MATQKL TIS+VVLMIF C+ STTK DVLNVHCVRPCS+TYDDESCY+DC++EN GA FC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPNISGEKDYCCNI 78
          YPKLP  S +KD CCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

BLAST of Lsi11G008380 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          MATQKL T+S+V+LMI  C+VSTTK DVLNV+CVRPCS+TYDDESCY+DC+REN GA FC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPNISGEKDYCCNI 78
          YPKLP  S +KD CCN+
Sbjct: 61 YPKLP--STDKDCCCNV 75

BLAST of Lsi11G008380 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          MA++KL T+  +V+M+F    S+ K D+  + C+RPC + +DD+SCYDDCVR N GA FC
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60

Query: 61 YPKLPNISGEKDYCCN 77
          YPKLP+++ EKD CCN
Sbjct: 61 YPKLPSVTNEKDCCCN 74

BLAST of Lsi11G008380 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-14
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 25 KEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFCYPKLPNISGEKDYCCN 77
          K DVLN+HCV+PCS+TYDDESCY+DC++EN GA FCYPKLP  S +KD CC+
Sbjct: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDKDCCCS 64

BLAST of Lsi11G008380 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1  MATQKLITISVVVLMIFTCLVSTTKEDVLNVHCVRPCSNTYDDESCYDDCVRENNGARFC 60
          M TQKL  +S++V + F+C  S+ + D L  +CV PCSN   D  C   C+ ++ GA FC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLPNISGEKDYCCN 77
           PKLP IS  K  CCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG91.2e-2576.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG56.0e-2577.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF54.6e-1774.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R85.1e-0846.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A5A7TJH11.5e-0440.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KGN61228.12.5e-2576.62hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651697.12.8e-2474.03hypothetical protein Csa_006343 [Cucumis sativus][more]
KAG6586428.14.0e-1553.95hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651701.12.6e-1471.15hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KGN54497.11.1e-0746.05hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G008380.1Lsi11G008380.1mRNA