Lsi11G007650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G007650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 8617453 .. 8619133 (-)
RNA-Seq ExpressionLsi11G007650
SyntenyLsi11G007650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACGGTTAATTGTTAAGAATTTTTAAGCAATGGTTAATCGATATAATCCCTTTAAAACATTTAAATTTTCAATTGTGGTTGGATATAACATATACAATATTTGCAATAAGTCTAAATATATACATATACGCACACACATATAGATAATTGACTTTTAAAAAATAAGATAACATGGTGTTGTAGGCGAAAGCTTTAGCCCTCTTGTTCGGTTTGAAGGTTGCGCATCGTCTGGAAGTTTTGAATCTTTTGGTGGAAATGGATGCTCAAGCTTTGGTTAACGTGGAGACTCATGCAAGACATCTAGTGTGTGAGTGATCCTTGAGGAAATCAAATCTTGGATGAGGAGGGTCAACATCAGGAGTTTTATTTATATTCCAAGATCTTGTAATCAAGTGGCCTGGCTACTTAGGCTTGAGCTAATAGGAGGACAAAGAAGTGGGTTCTTAGCTCTCCGTCTTGGTTGGCTCCAGTTATTCATTTTGATGCTTCTCGTTGTAATTCTTATATGATTTCTTCTTATTAATAAAGTTTTTCCTCTTTTCCTCAAAAAATAAAATATAAAAACATGGATTTAGATTAAAATAATTATAGTTGGGGCATTTGGTTATATGGTATCTAAAATACTCTAGAGGACATTTTAGAATTTAAAAAAATAATTGGGAATCATGTAAAAAAAAACCCTTTGCCATAAATGTGAACAAATTTCATTTTTGACATTAGATGTCCACGGGGCGAGGCAGGACAGAGATAACTTCCTTATTCCCCGTCTCCGCTCTCCATTTTATTCTCAATTCCTATGAAATTTCCCACAAGTAATTTGCGGGGTTGGATTCTCTGGAGAATTTCTCCCCATTTGGTTTTTTTTTTTAAAAAAATCAATCAAGTTAAATAAAAAAGTTTTAATTAAACAGTTAAACTTCTCGCTAATTTTTTTTAATATGATTAGTTCCACGTGACAATTTCAATTTAAAGAAAAATTACTCCAATTTTCTAGTATAAGAAAATAATTATCAATCAAATTATTAACATATATAATCTAAATTTAAATGTTCAATTTAAAAATGTTCATTATCTTAACCATTAATCAACAACAACAATAATAACAACAACATCGAATTATTATAATAAACAAAAAATATAGGCTAACGGCGCGGGGACAAAAAATGCATTCCTGACCTCATCCCAAAAATTTTCTCCCACTTCTTAACTCATTTCTCACAGAAAAAATCGACATCTCTACTTCCAAACTAAATATTAAACTTTTGCTACATGGTTGAATTTCCCTATTTTATTTTCTTAGACCCCCAAAAGAATCACAAGCCACAAATGAGAGGGTTTGTGTTTTGAAATGGGCTAAAGGTGAAGTGGGCCTTGGACCCTAGGTCAGAATGGGCTGTACATATTGATGAAGCCCAACTTTTTCTTTCAAATCACCAAATGTGTACTCACTTTCCACAACCATGTTGAAGTTGTCTATTTTTGTATTATTTTATCCCCCTTGCATGTTCTGTTGGTAATTATATTGCACTTAGAAGACTCAACTTCCAAAAAACCATTTATATGCACATGCCCCTTTATTATCGTCATATTGTATTGCCTTATATAGTAGAAAGCACATTCCATTTGCCAATTTGGCTTTGCCTAAATTCTCACTTTTGGGTTATGTACATATATAA

mRNA sequence

ATGATAACGGCGAAAGCTTTAGCCCTCTTGTTCGGTTTGAAGGTTGCGCATCGTCTGGAAGTTTTGAATCTTTTGGTGGAAATGGATGCTCAAGCTTTGGTTAACGTGGAGACTCATGCAAGACATCTAAAGACTCAACTTCCAAAAAACCATTTATATGCACATGCCCCTTTATTATCGTCATATTGTATTGCCTTATATAGTAGAAAGCACATTCCATTTGCCAATTTGGCTTTGCCTAAATTCTCACTTTTGGGTTATGTACATATATAA

Coding sequence (CDS)

ATGATAACGGCGAAAGCTTTAGCCCTCTTGTTCGGTTTGAAGGTTGCGCATCGTCTGGAAGTTTTGAATCTTTTGGTGGAAATGGATGCTCAAGCTTTGGTTAACGTGGAGACTCATGCAAGACATCTAAAGACTCAACTTCCAAAAAACCATTTATATGCACATGCCCCTTTATTATCGTCATATTGTATTGCCTTATATAGTAGAAAGCACATTCCATTTGCCAATTTGGCTTTGCCTAAATTCTCACTTTTGGGTTATGTACATATATAA

Protein sequence

MITAKALALLFGLKVAHRLEVLNLLVEMDAQALVNVETHARHLKTQLPKNHLYAHAPLLSSYCIALYSRKHIPFANLALPKFSLLGYVHI
Homology
The following BLAST results are available for this feature:
BLAST of Lsi11G007650 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G007650 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G007650 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G007650 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 4..54
e-value: 2.8E-5
score: 23.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G007650.1Lsi11G007650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity