Lsi11G007320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G007320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 7983282 .. 7983710 (-)
RNA-Seq Expression	Lsi11G007320
Synteny	Lsi11G007320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGTGGTGGGTATCAGAATTATGACTACGATTCAGGCGACTATTCATACAATCAATCTCAAGGACATGAAGTTCAGCCAACAATCGGATATTATGCGGTTTCTGCTTATGTAGAGAACAACAACCAGCTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGTGATAGGCAAACTGGTACCTATACAACCGCCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACGTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCAAAGGACGAGTACAAAACCACCTCTACTTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGCAAGGGCGGTGGCAGCACCAGTGGATCCGGTAGTAAGGGGGGCAATAAATATCTCAAATGA

mRNA sequence

ATGGGGGGTGGTGGGTATCAGAATTATGACTACGATTCAGGCGACTATTCATACAATCAATCTCAAGGACATGAAGTTCAGCCAACAATCGGATATTATGCGGTTTCTGCTTATGTAGAGAACAACAACCAGCTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGTGATAGGCAAACTGGTACCTATACAACCGCCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACGTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCAAAGGACGAGTACAAAACCACCTCTACTTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGCAAGGGCGGTGGCAGCACCAGTGGATCCGGTAGTAAGGGGGGCAATAAATATCTCAAATGA

Coding sequence (CDS)

ATGGGGGGTGGTGGGTATCAGAATTATGACTACGATTCAGGCGACTATTCATACAATCAATCTCAAGGACATGAAGTTCAGCCAACAATCGGATATTATGCGGTTTCTGCTTATGTAGAGAACAACAACCAGCTGAGCAGCTATGAACAAAGTTGGAGGACTCACGATCGTGATAGGCAAACTGGTACCTATACAACCGCCTCAACAAAGGCGGTTGCTTCCCGTGGTGAAACGTTCAAAGAAAGATCAACTGGGAGAGTTGGCGCAAAGGACGAGTACAAAACCACCTCTACTTACAGGGTTGGAGACAAAAGTGGATATACTGAGTATCAGTGTCAAGAGAGGTTCCGCCGAGTTGATTTCGGCGGCAAGGGCGGTGGCAGCACCAGTGGATCCGGTAGTAAGGGGGGCAATAAATATCTCAAATGA

Protein sequence

MGGGGYQNYDYDSGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTGTYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFGGKGGGSTSGSGSKGGNKYLK

Homology

[Close]

BLAST of Lsi11G007320 vs. ExPASy TrEMBL
Match: A0A5D3CHW8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00440 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 118/142 (83.10%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   GGYQNYDYD-SGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTG 63
           GGYQNYDYD S DYSYN  QG EVQ TIGY  V   VE+NNQ+SSYEQSWRTHDR+RQTG
Sbjct: 10  GGYQNYDYDYSDDYSYN--QGSEVQATIGYLEV---VEDNNQMSSYEQSWRTHDRNRQTG 69

Query: 64  TYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFG 123
           +YTT STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDF 
Sbjct: 70  SYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDF- 129

Query: 124 GKGGGSTSGSGSKG--GNKYLK 143
              GGS+SGSGSKG  GNKYLK
Sbjct: 130 ---GGSSSGSGSKGGKGNKYLK 142

[Close]

BLAST of Lsi11G007320 vs. ExPASy TrEMBL
Match: A0A5A7VGP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00800 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 118/142 (83.10%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   GGYQNYDYD-SGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTG 63
           GGYQNYDYD S DYSYN  QG EVQ TIGY  V   VE+NNQ+SSYEQSWRTHDR+RQTG
Sbjct: 10  GGYQNYDYDYSDDYSYN--QGPEVQATIGYLEV---VEDNNQMSSYEQSWRTHDRNRQTG 69

Query: 64  TYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFG 123
           +YTT STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDF 
Sbjct: 70  SYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDF- 129

Query: 124 GKGGGSTSGSGSKG--GNKYLK 143
              GGS+SGSGSKG  GNKYLK
Sbjct: 130 ---GGSSSGSGSKGGKGNKYLK 142

[Close]

BLAST of Lsi11G007320 vs. ExPASy TrEMBL
Match: A0A1S3BT44 (uncharacterized protein LOC103493252 OS=Cucumis melo OX=3656 GN=LOC103493252 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 118/142 (83.10%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   GGYQNYDYD-SGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTG 63
           GGYQNYDYD S DYSYN  QG EVQ TIGY  V   VE+NNQ+SSYEQSWRTHDR+RQTG
Sbjct: 10  GGYQNYDYDYSDDYSYN--QGPEVQATIGYLEV---VEDNNQMSSYEQSWRTHDRNRQTG 69

Query: 64  TYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFG 123
           +YTT STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDF 
Sbjct: 70  SYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDF- 129

Query: 124 GKGGGSTSGSGSKG--GNKYLK 143
              GGS+SGSGSKG  GNKYLK
Sbjct: 130 ---GGSSSGSGSKGGKGNKYLK 142

[Close]

BLAST of Lsi11G007320 vs. ExPASy TrEMBL
Match: A0A0A0LK69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049910 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.1e-39
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 4   GGYQNYDYDSGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTGT 63
           GGYQNYDY S DYSYN  QG EVQ TIGY  V      +NQ+SSYEQSWRTHDR+RQTG+
Sbjct: 10  GGYQNYDY-SNDYSYN--QGQEVQATIGYIEVI----EDNQMSSYEQSWRTHDRNRQTGS 69

Query: 64  YTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRV 120
            TT+STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQER RR+
Sbjct: 70  CTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRRI 118

[Close]

BLAST of Lsi11G007320 vs. ExPASy TrEMBL
Match: A0A6J1DXX9 (uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024099 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 96/140 (68.57%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 5   GYQNYDYDSGDYSYN-QSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTGT 64
           G Q+YDYDS DYSY+  SQG+E+QP  GY  V   V+ +NQ S YE+SWR HDRDRQTG 
Sbjct: 11  GDQDYDYDSDDYSYDPPSQGYEIQPRCGYAVV---VQEDNQASRYEKSWRCHDRDRQTGN 70

Query: 65  YTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFGG 124
           Y TASTK VASRGETFKERSTGRVG KDE+KTTST RVGD+SGYTEYQ QE +RRVDFG 
Sbjct: 71  YKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRSGYTEYQRQETYRRVDFGS 130

Query: 125 KGGGSTSG-SGSKGGNKYLK 143
            G GS  G S      KYLK
Sbjct: 131 SGSGSKGGQSNYSSSKKYLK 147

[Close]

BLAST of Lsi11G007320 vs. NCBI nr
Match: XP_038889670.1 (uncharacterized protein LOC120079530 [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 8.9e-53
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 12  DSGDYSYNQSQGHEVQPTIGYY-AVSAYVENNNQLSSYEQSWRTHDRDRQTGTYTTASTK 71
           +SGD+SYNQSQGHEVQ TIGY   VS  VEN NQLSSYEQSWRTHDR+RQTGTYTT STK
Sbjct: 4   NSGDHSYNQSQGHEVQATIGYMEVVSPCVENKNQLSSYEQSWRTHDRNRQTGTYTTTSTK 63

Query: 72  AVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFGGKGGG-ST 131
           AVASRGETFKERSTGR+GAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDFGGKGGG   
Sbjct: 64  AVASRGETFKERSTGRIGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDFGGKGGGRGG 123

Query: 132 SGSGSKGGNKYLK 143
           SGSGSKG N+YLK
Sbjct: 124 SGSGSKGSNRYLK 136

[Close]

BLAST of Lsi11G007320 vs. NCBI nr
Match: TYK10872.1 (uncharacterized protein E5676_scaffold231G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 3.2e-50
Identity = 118/142 (83.10%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   GGYQNYDYD-SGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTG 63
           GGYQNYDYD S DYSYN  QG EVQ TIGY  V   VE+NNQ+SSYEQSWRTHDR+RQTG
Sbjct: 10  GGYQNYDYDYSDDYSYN--QGSEVQATIGYLEV---VEDNNQMSSYEQSWRTHDRNRQTG 69

Query: 64  TYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFG 123
           +YTT STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDF 
Sbjct: 70  SYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDF- 129

Query: 124 GKGGGSTSGSGSKG--GNKYLK 143
              GGS+SGSGSKG  GNKYLK
Sbjct: 130 ---GGSSSGSGSKGGKGNKYLK 142

[Close]

BLAST of Lsi11G007320 vs. NCBI nr
Match: XP_008452151.1 (PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo] >KAA0067263.1 uncharacterized protein E6C27_scaffold418G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-50
Identity = 118/142 (83.10%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   GGYQNYDYD-SGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTG 63
           GGYQNYDYD S DYSYN  QG EVQ TIGY  V   VE+NNQ+SSYEQSWRTHDR+RQTG
Sbjct: 10  GGYQNYDYDYSDDYSYN--QGPEVQATIGYLEV---VEDNNQMSSYEQSWRTHDRNRQTG 69

Query: 64  TYTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFG 123
           +YTT STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQERFRRVDF 
Sbjct: 70  SYTTTSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERFRRVDF- 129

Query: 124 GKGGGSTSGSGSKG--GNKYLK 143
              GGS+SGSGSKG  GNKYLK
Sbjct: 130 ---GGSSSGSGSKGGKGNKYLK 142

[Close]

BLAST of Lsi11G007320 vs. NCBI nr
Match: KGN61102.1 (hypothetical protein Csa_021323 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.3e-39
Identity = 93/116 (80.17%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 4   GGYQNYDYDSGDYSYNQSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTGT 63
           GGYQNYDY S DYSYN  QG EVQ TIGY  V      +NQ+SSYEQSWRTHDR+RQTG+
Sbjct: 10  GGYQNYDY-SNDYSYN--QGQEVQATIGYIEVI----EDNQMSSYEQSWRTHDRNRQTGS 69

Query: 64  YTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRV 120
            TT+STKAVASRGETFKERSTGRVGAKDE+KTTSTYRVGDKSGYTEYQCQER RR+
Sbjct: 70  CTTSSTKAVASRGETFKERSTGRVGAKDEFKTTSTYRVGDKSGYTEYQCQERLRRI 118

[Close]

BLAST of Lsi11G007320 vs. NCBI nr
Match: XP_022157391.1 (uncharacterized protein LOC111024099 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-38
Identity = 96/140 (68.57%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 5   GYQNYDYDSGDYSYN-QSQGHEVQPTIGYYAVSAYVENNNQLSSYEQSWRTHDRDRQTGT 64
           G Q+YDYDS DYSY+  SQG+E+QP  GY  V   V+ +NQ S YE+SWR HDRDRQTG 
Sbjct: 11  GDQDYDYDSDDYSYDPPSQGYEIQPRCGYAVV---VQEDNQASRYEKSWRCHDRDRQTGN 70

Query: 65  YTTASTKAVASRGETFKERSTGRVGAKDEYKTTSTYRVGDKSGYTEYQCQERFRRVDFGG 124
           Y TASTK VASRGETFKERSTGRVG KDE+KTTST RVGD+SGYTEYQ QE +RRVDFG 
Sbjct: 71  YKTASTKEVASRGETFKERSTGRVGYKDEFKTTSTCRVGDRSGYTEYQRQETYRRVDFGS 130

Query: 125 KGGGSTSG-SGSKGGNKYLK 143
            G GS  G S      KYLK
Sbjct: 131 SGSGSKGGQSNYSSSKKYLK 147

The following BLAST results are available for this feature:

BLAST of Lsi11G007320 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G007320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHW8	1.5e-50	83.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGP1	2.0e-50	83.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BT44	2.0e-50	83.10	uncharacterized protein LOC103493252 OS=Cucumis melo OX=3656 GN=LOC103493252 PE=...	[more]
A0A0A0LK69	2.1e-39	80.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G049910 PE=4 SV=1	[more]
A0A6J1DXX9	1.3e-38	68.57	uncharacterized protein LOC111024099 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Lsi11G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889670.1	8.9e-53	86.47	uncharacterized protein LOC120079530 [Benincasa hispida]	[more]
TYK10872.1	3.2e-50	83.10	uncharacterized protein E5676_scaffold231G00440 [Cucumis melo var. makuwa]	[more]
XP_008452151.1	4.1e-50	83.10	PREDICTED: uncharacterized protein LOC103493252 [Cucumis melo] >KAA0067263.1 unc...	[more]
KGN61102.1	4.3e-39	80.17	hypothetical protein Csa_021323 [Cucumis sativus]	[more]
XP_022157391.1	2.8e-38	68.57	uncharacterized protein LOC111024099 [Momordica charantia]	[more]

BLAST of Lsi11G007320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G007320.1	Lsi11G007320.1	mRNA