Lsi11G007210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G007210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-H2 finger protein ATL56
Location	chr11: 7818954 .. 7819496 (+)
RNA-Seq Expression	Lsi11G007210
Synteny	Lsi11G007210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGTCGCCGCTTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

mRNA sequence

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGTCGCCGCTTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

Coding sequence (CDS)

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGTCGCCGCTTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

Protein sequence

MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL

Homology

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BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-33
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP  ++  +SG+P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGF 120
           L   S+LHR  R  RRR +  +SS G S R +KKL QF+FS        + DC +C DGF
Sbjct: 61  L--LSSLHRHHR-RRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGF 120

Query: 121 RKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEREI-DCVSSRNYE 178
           R+ QWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+  C   R   
Sbjct: 121 RQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGELWRCFGHRRSS 179

[Close]

BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-21
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           +P+  S +    P P PP +      T++LS  L   IMI ++   F+F+ L +      
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFI-LTSLGFTFF 64

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
                 L R  R   RR +  + S G S R +K+L QF++    + +   DC +C+DGFR
Sbjct: 65  FAFYWFLQRNYRHRLRRHRRHEYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFR 124

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCR 155
           + QWCRKL  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 125 QGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 51/175 (29.14%), Postives = 76/175 (43.43%), Query Frame = 0


Query: 10  SGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALHR 69
           S  P P PPPSPPP+      SL+  + ++I + + FF      T LLL+++      H 
Sbjct: 33  SDTPPPLPPPSPPPR-HNFTSSLMPGIAVVIAVLTAFFSL----TFLLLLYV-----KHC 92

Query: 70  RRRFHRRRAQFPD---------------------SSSGFSHRDLKKLLQFRFSNWVNPHS 129
           +RR        P                       +SG     ++ L  FRF        
Sbjct: 93  KRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKD 152

Query: 130 QIDCSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE 164
            ++C++CL  F   +  R L  C H +H +C+D+WL   S CPLCR   R+D E+
Sbjct: 153 GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR--YRVDPED 195

[Close]

BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 48/162 (29.63%), Postives = 68/162 (41.98%), Query Frame = 0


Query: 16  HPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALH------- 75
           +PPP PPP P  + LSLLL  +I ++ S + F+FL     L +      SA         
Sbjct: 25  YPPPPPPPPPPRE-LSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTN 84

Query: 76  --------RRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 135
                     R F      +   + G     +  +    F          +CS+CL+ F 
Sbjct: 85  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFE 144

Query: 136 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDME 163
           +D+  R L  C H +H  CID+WL+    CPLCR  V L  E
Sbjct: 145 EDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 40  ILLSSLFFVFLGLATALLLIHLCVASALHRR--RRFHRR---------RAQFP-DSSSGF 99
           I+L+S+  +F  +A  L+L     A  L RR  RR  RR          A+ P  SSS  
Sbjct: 28  IMLASVIILF--VAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSL 87

Query: 100 SHRD---LKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWL 159
           S  D   L+K+  F +S   +     +CS+CL  F +D   R L  CGHV+H  CID+W 
Sbjct: 88  SPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF 147

[Close]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRRRFH RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRRRFH RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 161/180 (89.44%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSG PLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 56  MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 115

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRRRFH R +Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 116 LCVASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 175

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 176 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 233

[Close]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL
Match: A0A6J1ENH8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 147/180 (81.67%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGDPLPHPP  PPPKPE +LLSLLLKV +MI  ++LFF+FLGLATALLL H
Sbjct: 1   MPLQDSAAGSGDPLPHPP--PPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LC+ASAL      HRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFR
Sbjct: 61  LCIASAL------HRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCRKL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+LYAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL
Match: A0A6J1K548 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.8e-76
Identity = 147/180 (81.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SG PLPHPP  PPPKPE +LLSLLLKVT+MI  ++LFFVFLGLATALLL H
Sbjct: 1   MPLQDSAAGSGYPLPHPP--PPPKPEAKLLSLLLKVTVMIFFTTLFFVFLGLATALLLFH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LC+ASAL      HRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFR
Sbjct: 61  LCIASAL------HRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCRKL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+ YAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEIFYAL 172

[Close]

BLAST of Lsi11G007210 vs. NCBI nr
Match: XP_038889631.1 (RING-H2 finger protein ATL56-like [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 166/180 (92.22%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQDSAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQDSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHR RRFHRRRAQF DSS+GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRHRRFHRRRAQFSDSSTGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCRKL GCGHVYHRKCIDSWLVRVSACPLCRRCVRLD EE EIDCVSS NYELLYAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDKEELEIDCVSSPNYELLYAL 178

[Close]

BLAST of Lsi11G007210 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa] >TYK10847.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa])

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRRRFH RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Lsi11G007210 vs. NCBI nr
Match: XP_004149098.1 (RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 5.9e-86
Identity = 161/180 (89.44%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSG PLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRRRFH R +Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Lsi11G007210 vs. NCBI nr
Match: XP_022929717.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 147/180 (81.67%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGDPLPHPP  PPPKPE +LLSLLLKV +MI  ++LFF+FLGLATALLL H
Sbjct: 1   MPLQDSAAGSGDPLPHPP--PPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LC+ASAL      HRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFR
Sbjct: 61  LCIASAL------HRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCRKL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+LYAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of Lsi11G007210 vs. NCBI nr
Match: XP_023546946.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 3.3e-76
Identity = 148/180 (82.22%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGD LPHPP  PPPKPE +LLSLLLKV +MI  ++LFFVFLGLATALLL H
Sbjct: 1   MPLQDSAAASGDSLPHPP--PPPKPEGKLLSLLLKVAVMIFFTTLFFVFLGLATALLLFH 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LC+ASAL      HRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFR
Sbjct: 61  LCIASAL------HRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 180
           K QWCRKL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVSSRNYE+LYAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSSRNYEILYAL 172

[Close]

BLAST of Lsi11G007210 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-34
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP  ++  +SG+P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGF 120
           L   S+LHR  R  RRR +  +SS G S R +KKL QF+FS        + DC +C DGF
Sbjct: 61  L--LSSLHRHHR-RRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGF 120

Query: 121 RKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEREI-DCVSSRNYE 178
           R+ QWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+  C   R   
Sbjct: 121 RQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGELWRCFGHRRSS 179

[Close]

BLAST of Lsi11G007210 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-22
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           +P+  S +    P P PP +      T++LS  L   IMI ++   F+F+ L +      
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFI-LTSLGFTFF 64

Query: 61  LCVASALHRRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
                 L R  R   RR +  + S G S R +K+L QF++    + +   DC +C+DGFR
Sbjct: 65  FAFYWFLQRNYRHRLRRHRRHEYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFR 124

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCR 155
           + QWCRKL  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 125 QGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of Lsi11G007210 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 40  ILLSSLFFVFLGLATALLLIHLCVASALHRR--RRFHRR---------RAQFP-DSSSGF 99
           I+L+S+  +F  +A  L+L     A  L RR  RR  RR          A+ P  SSS  
Sbjct: 28  IMLASVIILF--VAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSL 87

Query: 100 SHRD---LKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWL 159
           S  D   L+K+  F +S   +     +CS+CL  F +D   R L  CGHV+H  CID+W 
Sbjct: 88  SPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF 147

[Close]

BLAST of Lsi11G007210 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 48/162 (29.63%), Postives = 68/162 (41.98%), Query Frame = 0


Query: 16  HPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALH------- 75
           +PPP PPP P  + LSLLL  +I ++ S + F+FL     L +      SA         
Sbjct: 25  YPPPPPPPPPPRE-LSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTN 84

Query: 76  --------RRRRFHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 135
                     R F      +   + G     +  +    F          +CS+CL+ F 
Sbjct: 85  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFE 144

Query: 136 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDME 163
           +D+  R L  C H +H  CID+WL+    CPLCR  V L  E
Sbjct: 145 EDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of Lsi11G007210 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 40/138 (28.99%), Postives = 58/138 (42.03%), Query Frame = 0


Query: 38  IMILLSSLFFVFLGLATALLLIHLCVASALHRRR-------RFHRRRAQFPDS------- 97
           I++LLS +FF+         ++HL V   L ++R           +  +F DS       
Sbjct: 56  IIVLLSVIFFI-------CSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQL 115

Query: 98  -------SSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYH 155
                   SG     +  L  F +          DC++CL  F +D   R L  C H +H
Sbjct: 116 QQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFH 175

The following BLAST results are available for this feature:

BLAST of Lsi11G007210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	3.5e-33	46.70	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	4.1e-21	38.31	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q5EAE9	5.1e-08	29.14	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q9LX93	5.1e-08	29.63	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LZJ6	5.1e-08	37.31	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of Lsi11G007210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFV1	1.2e-87	90.56	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	1.2e-87	90.56	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A0A0LJ61	2.9e-86	89.44	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A6J1ENH8	1.2e-76	81.67	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 ...	[more]
A0A6J1K548	7.8e-76	81.67	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE...	[more]

BLAST of Lsi11G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889631.1	3.7e-88	92.22	RING-H2 finger protein ATL56-like [Benincasa hispida]	[more]
XP_008452306.1	2.4e-87	90.56	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 fin...	[more]
XP_004149098.1	5.9e-86	89.44	RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_022929717.1	2.5e-76	81.67	RING-H2 finger protein ATL56-like [Cucurbita moschata]	[more]
XP_023546946.1	3.3e-76	82.22	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi11G007210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	2.5e-34	46.70	RING/U-box superfamily protein	[more]
AT4G30370.1	2.9e-22	38.31	RING/U-box superfamily protein	[more]
AT3G62690.1	3.7e-09	37.31	AtL5	[more]
AT5G10380.1	3.7e-09	29.63	RING/U-box superfamily protein	[more]
AT1G23980.1	3.1e-08	28.99	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 e-value: 6.6E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 e-value: 5.2E-12 score: 45.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 112..154 score: 12.504031
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 87..163 e-value: 5.4E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 4..179
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 4..179
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G007210.1	Lsi11G007210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane