Lsi11G006650 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE Homology
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34 Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33 Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11 Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11 Identity = 45/85 (52.94%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10 Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 0
BLAST of Lsi11G006650 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa]) HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34 Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0
BLAST of Lsi11G006650 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25 Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0
BLAST of Lsi11G006650 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24 Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0
BLAST of Lsi11G006650 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya]) HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12 Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of Lsi11G006650 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa]) HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11 Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0
BLAST of Lsi11G006650 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08 Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0
BLAST of Lsi11G006650 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07 Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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