Lsi11G006650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G006650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 7000011 .. 7000268 (+)
RNA-Seq ExpressionLsi11G006650
SyntenyLsi11G006650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA

mRNA sequence

ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA

Coding sequence (CDS)

ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGATACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA

Protein sequence

MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
Homology
BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKRPKS SC FSIFGLFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAKAYI+KIH+QIRS E +
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKR KS SC FSIF LFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAKAYI+KIH+QIRS +T+
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSQTQ 85

BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 7  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVA 66
          N RQK+  S    FSIF  FKSR GR+  +   +      M  + KVWPSD DK  HWVA
Sbjct: 4  NNRQKKSHSS---FSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 63

Query: 67 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAK YID+I Y+ R FE+E
Sbjct: 64 EPGIDRKAKDYIDRI-YRNRVFESE 84

BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 45/85 (52.94%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 7  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVA 66
          N RQK+  +    FSIF  FKSR GR+      +      M  + KVWPSD DK  HWVA
Sbjct: 4  NNRQKKAHAS---FSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 63

Query: 67 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAK YID+I Y+ R FE+E
Sbjct: 64 EPGIDRKAKDYIDRI-YRNRVFESE 84

BLAST of Lsi11G006650 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 9  RQKRPKSPSCWFSIFGLFKSRDGRR-----RRDDTMTMEDTRKVWPSDGDKGRHWVAEPG 68
          RQK+  S    FSIF  FKS+ GR+        +   +  + KVWPSD DKG  WVAEPG
Sbjct: 6  RQKKTHSS---FSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPG 65

Query: 69 IDRKAKAYIDKIHYQIRSFETE 86
          IDRKAK YID+I Y+ R FETE
Sbjct: 66 IDRKAKDYIDRI-YKNRVFETE 83

BLAST of Lsi11G006650 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKRPKS SC FSIFGLFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAKAYI+KIH+QIRS E +
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of Lsi11G006650 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 3  SSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEP 62
          +S NNKRQK PKSPSC+FSIF LF+SRD R+RRD+  T++D RKVWPSD D+ R+WVAEP
Sbjct: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDSRKRRDE--TIDDMRKVWPSDEDRDRYWVAEP 61

Query: 63 GIDRKAKAYIDKIHYQIRSFETE 86
          GIDRKAKAYIDKIH QIRS  TE
Sbjct: 62 GIDRKAKAYIDKIHTQIRSSGTE 81

BLAST of Lsi11G006650 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRR-RDDTMTMEDTRKVWPSDGDKGRHWV 60
          MASS  N  +++PKSPSC FSI  LFKSR  R+R  DD + MEDTRKVWPSD DKGRHWV
Sbjct: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60

Query: 61 AEPGIDRKAKAYIDKIHYQIR 81
          AEPGIDRKAKAYID+IHYQIR
Sbjct: 61 AEPGIDRKAKAYIDRIHYQIR 79

BLAST of Lsi11G006650 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 12 RPKSPSCWFSIFGLFKSRDGRRRRDDTMT-MEDTRKVWPSDGDKGRHWVAEPGIDRKAKA 71
          R K  S  FSIFGLFKSR   RR  D  T ++DTRKVWPSD DK R+WVAEPGIDRKA A
Sbjct: 5  RQKKSSSSFSIFGLFKSRRSHRRGGDDQTFVDDTRKVWPSDEDK-RNWVAEPGIDRKASA 64

Query: 72 YIDKIH 77
          +I K H
Sbjct: 65 FIAKFH 69

BLAST of Lsi11G006650 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 7  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVA 66
          N RQK+  S    FSIF  FKSR GR+  +   +      M  + KVWPSD DK  HWVA
Sbjct: 4  NNRQKKSHSS---FSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 63

Query: 67 EPGIDRKAKAYIDKIHYQIRSFETE 86
          EPGIDRKAK YID+I Y+ R FE+E
Sbjct: 64 EPGIDRKAKDYIDRI-YRNRVFESE 84

BLAST of Lsi11G006650 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 20 FSIFGLFKSRDGRRRRDDTMTMED---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH 77
          FS+F  FK+R   R   D  + +D   TRK   SD DK R+WVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADG-SWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

BLAST of Lsi11G006650 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 44 TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH 77
          TRK W SD DK R+WVAEPGIDRKA A+I K H
Sbjct: 23 TRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDY21.6e-3485.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ243.0e-3383.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1[more]
A0A5A7SWT91.4e-1154.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KAK65.4e-1152.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0K8W01.6e-1053.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0056089.13.2e-3485.88hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642... [more]
KAG6586063.12.8e-2574.70hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6599163.15.2e-2475.31hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021898970.11.6e-1266.67uncharacterized protein LOC110815469 [Carica papaya][more]
KAA0035003.13.0e-1154.12hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... [more]
Match NameE-valueIdentityDescription
AT3G05858.15.6e-0853.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.13.6e-0772.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 5..80
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 5..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G006650.1Lsi11G006650.1mRNA