Lsi11G006600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G006600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	UPF0725 protein At4g29550-like
Location	chr11: 6914243 .. 6915251 (-)
RNA-Seq Expression	Lsi11G006600
Synteny	Lsi11G006600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAAAAAAAAAACCCTAAAAATGGAAGCTAACCAAGCTCCGTCCGTCCCACAATTTTATCTTTCCCCTTTTGTTTCTCCTCCAAGATTATAGTGGTGAGTTCTTTCTAATTCTTCATATTCTTTCTTCTCCGCATATCCTTTTGATAACAGTATTTTGGGTTTCGATTTTATTTGAATCGCTCTATTTTCTTCTTCTTCTTCTTCTTTAGTTAGGGTTTATAGGGTTTGATGTTTGTGCGTTGTTAGTTTGAATTAGCTGATATTATTTGCTCGACGATGGCTTCCTCGTCGTCTTCCAAACCCTCCCGGCCTCCTATGTCGGAGTATCATCCATCAGAAGAGGACAGTGACGATATCCCTGACGACCCTGACTGGGAGTCTGAATCTCCAATAGAGTGCGAAGGTGACTCCTCGGAGTCGGAAGGTGAGATCACAGATCGGGAAGAGCGTGAGTGGACCAAAGAAGAAGAGCTCCTCTACTACCGTACATTGAATGAAACAGAGGTCATAAGAATTTTATTTAATTAATTAATTTCATTCAAATTCAACTTTCATATTGATGATTTTGGAGGAATCATAATAATGGGCAGGGGTTCGATGCTCCGAAACTTCCTGATAATGGTACCTGTGGTGGACTTTTTCGGCTTTCCAACTGCAGTCTAAAGCGCCGTTATATTCGACAATGTGCTGAGGTTGGCATCAAAGATTTCAACTCTCAGAATGTACATTTTTATCTCATAACCTCCACTTCCAGCCCCTGTTTCTCTTTATTTTGCCCGGACTTTCATTCTCTTTATTTTGAAGGGTGCCGACTTTGAGTTTGTGGAGATTGAAAAGGCTTGCAGTCAGATTGTGTGTGGTTGCATGCTTTACCTTACTCTCAAGGTTAGGCCTAAGGGGATGCCTTCCGATTACCCAACCACTTCCCTTCAGGCCAAAGTGCTCTACGGAATTGGGGAAAACAATATTACTACTGAATTCTGCGGACTTACACCTGGTAATTAA

mRNA sequence

AAACAAAAAAAAAAACCCTAAAAATGGAAGCTAACCAAGCTCCGTCCGTCCCACAATTTTATCTTTCCCCTTTTGTTTCTCCTCCAAGATTATAGTGTTAGGGTTTATAGGGTTTGATGTTTGTGCGTTGTTAGTTTGAATTAGCTGATATTATTTGCTCGACGATGGCTTCCTCGTCGTCTTCCAAACCCTCCCGGCCTCCTATGTCGGAGTATCATCCATCAGAAGAGGACAGTGACGATATCCCTGACGACCCTGACTGGGAGTCTGAATCTCCAATAGAGTGCGAAGGTGACTCCTCGGAGTCGGAAGGTGAGATCACAGATCGGGAAGAGCGTGAGTGGACCAAAGAAGAAGAGCTCCTCTACTACCGTACATTGAATGAAACAGAGGGGTTCGATGCTCCGAAACTTCCTGATAATGGTACCTGTGGTGGACTTTTTCGGCTTTCCAACTGCAGTCTAAAGCGCCGTTATATTCGACAATGTGCTGAGGGTGCCGACTTTGAGTTTGTGGAGATTGAAAAGGCTTGCAGTCAGATTGTGTGTGGTTGCATGCTTTACCTTACTCTCAAGGTTAGGCCTAAGGGGATGCCTTCCGATTACCCAACCACTTCCCTTCAGGCCAAAGTGCTCTACGGAATTGGGGAAAACAATATTACTACTGAATTCTGCGGACTTACACCTGGTAATTAA

Coding sequence (CDS)

ATGGCTTCCTCGTCGTCTTCCAAACCCTCCCGGCCTCCTATGTCGGAGTATCATCCATCAGAAGAGGACAGTGACGATATCCCTGACGACCCTGACTGGGAGTCTGAATCTCCAATAGAGTGCGAAGGTGACTCCTCGGAGTCGGAAGGTGAGATCACAGATCGGGAAGAGCGTGAGTGGACCAAAGAAGAAGAGCTCCTCTACTACCGTACATTGAATGAAACAGAGGGGTTCGATGCTCCGAAACTTCCTGATAATGGTACCTGTGGTGGACTTTTTCGGCTTTCCAACTGCAGTCTAAAGCGCCGTTATATTCGACAATGTGCTGAGGGTGCCGACTTTGAGTTTGTGGAGATTGAAAAGGCTTGCAGTCAGATTGTGTGTGGTTGCATGCTTTACCTTACTCTCAAGGTTAGGCCTAAGGGGATGCCTTCCGATTACCCAACCACTTCCCTTCAGGCCAAAGTGCTCTACGGAATTGGGGAAAACAATATTACTACTGAATTCTGCGGACTTACACCTGGTAATTAA

Protein sequence

MASSSSSKPSRPPMSEYHPSEEDSDDIPDDPDWESESPIECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCAEGADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITTEFCGLTPGN

Homology

[Close]

BLAST of Lsi11G006600 vs. ExPASy TrEMBL
Match: A0A6J1C8H7 (uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008952 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.3e-14
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 20  SEEDSDDIPDDPDWESESPIECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFD 79
           +  +S  + DD D   + P E         G     E RE T EEE+ YY  L +TEGFD
Sbjct: 2   ASSNSPQLSDDDDDFGDEPREMTIHDDAYFG----NEPREMTLEEEIEYYIALKKTEGFD 61

Query: 80  APKLPDNGTCGGLFRLSNCSLKRRYIRQCAE------------GADFEFVEIEKACSQIV 139
            P  PD+  CG +  ++   L    +++CA+            G  FEFV++ KA ++ V
Sbjct: 62  MPSFPDSYACGRIETITGSRLHSEELQECADKDKAVDYFNQQNGTSFEFVKMVKATNKAV 121

Query: 140 CGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITTEFCGLTP 175
            G M YLT +V+  G P + PT +LQA+VL G+   +   E C   P
Sbjct: 122 VGIMYYLTFEVKQMGSPPNSPTKTLQARVLRGLPIGHFDVELCRPEP 164

[Close]

BLAST of Lsi11G006600 vs. ExPASy TrEMBL
Match: A0A6J1CAH1 (uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 58  REWTKEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCA-------- 117
           RE  +EE   YY+ + E+EGFD P  P       +  L   +L    +R+CA        
Sbjct: 54  REMNEEEVNRYYKAIQESEGFDVPSFPGTYAFAIISPLPLINLISEEVRECAGQAIKHYN 113

Query: 118 --EGADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITT 177
              GA FEFV++ KA SQ   G + +LT +V+  G P D PTT+LQA+VL GI  ++   
Sbjct: 114 NENGASFEFVKMLKANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDV 173

[Close]

BLAST of Lsi11G006600 vs. ExPASy TrEMBL
Match: A0A6J1C7D4 (uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-12
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 58  REWTKEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCAEGADFEFV 117
           RE  +EE   YY+ + E+EGFD P  P      G +  +  S          EGA FEFV
Sbjct: 54  REMNEEEVNRYYKAIQESEGFDVPSFP------GTYAFAIISPLPLINLISEEGASFEFV 113

Query: 118 EIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITTEFCGLTPGN 177
           ++ KA SQ   G + +LT +V+  G P D PTT+LQA+VL GI  ++   + C   P N
Sbjct: 114 KMLKANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPTN 166

[Close]

BLAST of Lsi11G006600 vs. ExPASy TrEMBL
Match: A0A6J1IJT3 (uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-07
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 0


Query: 39  IECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFDAPKLPDNGTCG-------- 98
           +E E +  +S+ E         TK+EE+ Y+  +NE++GFD P        G        
Sbjct: 8   LEEEKEEIDSDDEFFQDGYHTITKKEEMEYFCAVNESQGFDVPYFGAVYAFGLITPMKLH 67

Query: 99  ---GLFRLSNCSLKRRYIRQCAE-GADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSD 158
               LF+    S         +E G +FE V+I KA  +  CG M Y+T  V+P G  ++
Sbjct: 68  GFPELFKEVQISANEAIKHYNSENGTNFEVVDIVKANHEGCCGSMYYITFNVKPIGTSAE 127

Query: 159 YPTTSLQAKVLYGIG-ENNITTEFCGLTPGN 177
           +P+ + QAKV Y I  ++ I  E C   P N
Sbjct: 128 FPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

[Close]

BLAST of Lsi11G006600 vs. ExPASy TrEMBL
Match: A0A6J1FN74 (uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC111447330 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-06
Identity = 46/151 (30.46%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 39  IECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFDAP--------------KLP 98
           +E E +  +S+ E         TK+EE+ YY  + E++GFD P              KL 
Sbjct: 8   LEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSLITPMKLH 67

Query: 99  DNGTCGGLFRLSNCSLKRRYIRQCAEGADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMP 158
           +        ++S     + Y  +   G +FE V+I KA     CG M Y+T  V+P G P
Sbjct: 68  EVPGMLKEVQISANEAIKHYNNE--NGTNFEVVDIVKANHSGCCGSMYYITFNVKPIGTP 127

Query: 159 SDYPTTSLQAKVLYGIG-ENNITTEFCGLTP 175
            ++P+ + QAKV Y I  ++ I  E C   P
Sbjct: 128 LEFPSITFQAKVYYAIPIKDIIDVELCRPKP 156

[Close]

BLAST of Lsi11G006600 vs. NCBI nr
Match: XP_022137526.1 (uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncharacterized protein LOC111008952 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 20  SEEDSDDIPDDPDWESESPIECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFD 79
           +  +S  + DD D   + P E         G     E RE T EEE+ YY  L +TEGFD
Sbjct: 2   ASSNSPQLSDDDDDFGDEPREMTIHDDAYFG----NEPREMTLEEEIEYYIALKKTEGFD 61

Query: 80  APKLPDNGTCGGLFRLSNCSLKRRYIRQCAE------------GADFEFVEIEKACSQIV 139
            P  PD+  CG +  ++   L    +++CA+            G  FEFV++ KA ++ V
Sbjct: 62  MPSFPDSYACGRIETITGSRLHSEELQECADKDKAVDYFNQQNGTSFEFVKMVKATNKAV 121

Query: 140 CGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITTEFCGLTP 175
            G M YLT +V+  G P + PT +LQA+VL G+   +   E C   P
Sbjct: 122 VGIMYYLTFEVKQMGSPPNSPTKTLQARVLRGLPIGHFDVELCRPEP 164

[Close]

BLAST of Lsi11G006600 vs. NCBI nr
Match: XP_022137488.1 (uncharacterized protein LOC111008920 isoform X1 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-13
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 58  REWTKEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCA-------- 117
           RE  +EE   YY+ + E+EGFD P  P       +  L   +L    +R+CA        
Sbjct: 54  REMNEEEVNRYYKAIQESEGFDVPSFPGTYAFAIISPLPLINLISEEVRECAGQAIKHYN 113

Query: 118 --EGADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITT 177
              GA FEFV++ KA SQ   G + +LT +V+  G P D PTT+LQA+VL GI  ++   
Sbjct: 114 NENGASFEFVKMLKANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDV 173

[Close]

BLAST of Lsi11G006600 vs. NCBI nr
Match: XP_022137489.1 (uncharacterized protein LOC111008920 isoform X2 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 7.2e-12
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 58  REWTKEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCAEGADFEFV 117
           RE  +EE   YY+ + E+EGFD P  P      G +  +  S          EGA FEFV
Sbjct: 54  REMNEEEVNRYYKAIQESEGFDVPSFP------GTYAFAIISPLPLINLISEEGASFEFV 113

Query: 118 EIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGENNITTEFCGLTPGN 177
           ++ KA SQ   G + +LT +V+  G P D PTT+LQA+VL GI  ++   + C   P N
Sbjct: 114 KMLKANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPTN 166

[Close]

BLAST of Lsi11G006600 vs. NCBI nr
Match: XP_022975633.1 (uncharacterized protein LOC111475320 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 0


Query: 39  IECEGDSSESEGEITDREEREWTKEEELLYYRTLNETEGFDAPKLPDNGTCG-------- 98
           +E E +  +S+ E         TK+EE+ Y+  +NE++GFD P        G        
Sbjct: 8   LEEEKEEIDSDDEFFQDGYHTITKKEEMEYFCAVNESQGFDVPYFGAVYAFGLITPMKLH 67

Query: 99  ---GLFRLSNCSLKRRYIRQCAE-GADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSD 158
               LF+    S         +E G +FE V+I KA  +  CG M Y+T  V+P G  ++
Sbjct: 68  GFPELFKEVQISANEAIKHYNSENGTNFEVVDIVKANHEGCCGSMYYITFNVKPIGTSAE 127

Query: 159 YPTTSLQAKVLYGIG-ENNITTEFCGLTPGN 177
           +P+ + QAKV Y I  ++ I  E C   P N
Sbjct: 128 FPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

[Close]

BLAST of Lsi11G006600 vs. NCBI nr
Match: XP_023525925.1 (uncharacterized protein LOC111789396 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 56/171 (32.75%), Postives = 83/171 (48.54%), Query Frame = 0


Query: 2   ASSSSSKPSRPPMSEYHPSEEDSDDIPDDPDWESESPIECEGDSSESEGEITDREEREWT 61
           ASS+S+  S+P      P+    D +   P          + D S+ E E      R   
Sbjct: 10  ASSASASDSKPT-----PAAGCCDHLLASPCKPIHPNHTLDLDDSDEEYE---HGVRVMN 69

Query: 62  KEEELLYYRTLNETEGFDAPKLPDNGTCGGLFRLSNCSLKRRYIRQCAE----------G 121
           +EE   YY+ L +T+GFD P  P+    G +  +    L + Y+R CAE          G
Sbjct: 70  REEMSRYYQVLRDTDGFDVPTFPNTYALGLIVPICEEYLSKPYLRDCAEKAISHYNIRNG 129

Query: 122 ADFEFVEIEKACSQIVCGCMLYLTLKVRPKGMPSDYPTTSLQAKVLYGIGE 163
            +FEFV+I KA  Q+V G   Y+T  V+  G  +++PTT+ +AKVL GI +
Sbjct: 130 TNFEFVKIVKANQQVVSGFFYYITFDVKQIG--TEFPTTTFEAKVLDGIDD 170

The following BLAST results are available for this feature:

BLAST of Lsi11G006600 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G006600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8H7	8.3e-14	34.13	uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1CAH1	1.4e-13	37.21	uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C7D4	3.5e-12	38.66	uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IJT3	5.8e-07	31.13	uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320...	[more]
A0A6J1FN74	3.7e-06	30.46	uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC1114473...	[more]

BLAST of Lsi11G006600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137526.1	1.7e-13	34.13	uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncha...	[more]
XP_022137488.1	2.9e-13	37.21	uncharacterized protein LOC111008920 isoform X1 [Momordica charantia]	[more]
XP_022137489.1	7.2e-12	38.66	uncharacterized protein LOC111008920 isoform X2 [Momordica charantia]	[more]
XP_022975633.1	1.2e-06	31.13	uncharacterized protein LOC111475320 [Cucurbita maxima]	[more]
XP_023525925.1	1.6e-06	32.75	uncharacterized protein LOC111789396 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi11G006600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 99..169 e-value: 6.8E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006600.1	Lsi11G006600.1	mRNA