Lsi11G006560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G006560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NIM1-INTERACTING 1-like
Location	chr11: 6895434 .. 6895820 (-)
RNA-Seq Expression	Lsi11G006560
Synteny	Lsi11G006560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAATAATGAGAAAGAAGAAGAAGAAGAAGAAGATAATGATGATGAAGATGAAGAAGAAAAGATAAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAATCAAAAGAATCAGCAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTATTCAATTACCAGCTGCTTCATCTTCAACAACAAAACAGAGCAATGAAAAGAGAGAACAAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

mRNA sequence

ATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAATAATGAGAAAGAAGAAGAAGAAGAAGAAGATAATGATGATGAAGATGAAGAAGAAAAGATAAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAATCAAAAGAATCAGCAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTATTCAATTACCAGCTGCTTCATCTTCAACAACAAAACAGAGCAATGAAAAGAGAGAACAAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAATAATGAGAAAGAAGAAGAAGAAGAAGAAGATAATGATGATGAAGATGAAGAAGAAAAGATAAAGTTGTTCTTTGCTCTGATTCAAAACACAAAAGCCATGAGAGACAGAATGAAATCAAAAGAATCAGCAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATGGAAATTACAACAACAAATCCAACATCACTATTCAATTACCAGCTGCTTCATCTTCAACAACAAAACAGAGCAATGAAAAGAGAGAACAAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEEKSKGVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQEEQEDKDKVGKGKNGLDLNLSL

Homology

[Close]

BLAST of Lsi11G006560 vs. ExPASy TrEMBL
Match: A0A0A0LJ23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 94/132 (71.21%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMK-SKESAEEEK 60
           ME GRKRRKLQ    EEEEEE      E+EK++LF+ALIQNTKAMRD MK SKE  EEEK
Sbjct: 1   MESGRKRRKLQ----EEEEEE------EDEKMELFYALIQNTKAMRDGMKYSKELTEEEK 60

Query: 61  SKGVWNPKFQPEDF-IEDG-NYNNKSN-ITIQLPAASSSTTKQSNEKREQEEQEDKDKVG 120
           SKGVWNPKFQPEDF  EDG NYNNKSN I +QL AASSSTTKQ NEK++QEE +   KV 
Sbjct: 61  SKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHY-KVV 120

Query: 121 KGKNGLDLNLSL 129
           + K GLDLNLSL
Sbjct: 121 EVKKGLDLNLSL 121

[Close]

BLAST of Lsi11G006560 vs. ExPASy TrEMBL
Match: A0A6J1DQG7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia OX=3673 GN=LOC111023284 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.5e-23
Identity = 80/129 (62.02%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESA-EEEK 60
           ME  R++RKLQ++EKE ++E    DE+EEEK+KLFFALIQNTK++RDR+KSK+SA +++K
Sbjct: 1   MESVRRKRKLQDDEKEAQKE----DEEEEEKMKLFFALIQNTKSIRDRVKSKQSAPQQDK 60

Query: 61  SKGVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQEEQEDKDKVGKGK 120
           SKGVWNPKFQPEDFIED   + KSN T Q   A+SS+TKQ N  +++EE++ KDKV +G 
Sbjct: 61  SKGVWNPKFQPEDFIED--CDKKSNPTPQF--AASSSTKQRN--KQEEEEQGKDKV-EGI 118

Query: 121 NGLDLNLSL 129
             LDLNLSL
Sbjct: 121 EDLDLNLSL 118

[Close]

BLAST of Lsi11G006560 vs. ExPASy TrEMBL
Match: A0A061F4Z3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.9e-14
Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKE---EEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMK-----SK 60
           ME GRK+RK+ N E+E   EEEEE++D+E+EEEK++ FFALI++T+ MRDR++     SK
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  ESAEEEKSK-----GVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQE 120
           E  E +K +      VWNPKFQPEDF+ED    N   +    P+++          REQE
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMEDSKPKNLLAVNEAGPSSN----------REQE 120

Query: 121 EQEDKDKVGKGKNGLDLNLSL 129
           + +D  K G    GLDL LSL
Sbjct: 121 QGQD-TKEGGEDGGLDLKLSL 130

[Close]

BLAST of Lsi11G006560 vs. ExPASy TrEMBL
Match: A0A6P9EP42 (protein NIM1-INTERACTING 1-like OS=Juglans regia OX=51240 GN=LOC108987715 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEEKS 60
           MEG RK+RK+      E EE ++D++DEE+KI+ FF LI++T+ +RDR++S     E K 
Sbjct: 1   MEGERKKRKIL-----ESEEGEDDEDDEEKKIQKFFDLIRSTREVRDRLRSSTGFNESKD 60

Query: 61  ------------KG--VWNPKFQPEDFIEDGNYNNKSNI-TIQLPAASSSTTKQSNEKRE 120
                       KG  VWNP FQPEDFI+D   +  ++    Q P  S STTK +     
Sbjct: 61  QKEEKTRVEKEIKGITVWNPTFQPEDFIQDDKSSKSTSPGATQQPGPSKSTTKGN----- 120

Query: 121 QEEQEDKDKVGKGKNGLDLNLSL 129
             E+ED+D+   G +GLDLNLSL
Sbjct: 121 --EEEDQDRSEDGNHGLDLNLSL 131

[Close]

BLAST of Lsi11G006560 vs. ExPASy TrEMBL
Match: A0A1U8I688 (bromodomain-containing protein 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107893292 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKS-------KE 60
           ME  RK+RK+ N E++++E+ED DD DEEEK++ FFALI++T+ MRDR+++       KE
Sbjct: 1   MENERKKRKMGNEEEKDDEDEDEDD-DEEEKVEKFFALIRSTREMRDRLRNAAVPNGPKE 60

Query: 61  SAEEEKSK------------GVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSN 120
              ++K +            G WNPKFQ EDF+E G+ +   N ++ L  A  S++K   
Sbjct: 61  EEYQKKKQEDKAVVVGGGGVGQWNPKFQAEDFME-GSISRSGNNSLGLNVAGPSSSK--- 120

Query: 121 EKREQEEQEDKDKVGKGKNGLDLNLSL 129
            +RE E+  + D  G+G  GLDL LSL
Sbjct: 121 VQREPEKGTEDDGGGEGGGGLDLKLSL 142

[Close]

BLAST of Lsi11G006560 vs. NCBI nr
Match: XP_038889660.1 (protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 91/116 (78.45%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEEKS 60
           ME GRKRRKL     EEEEEED+D+E E   +KL FALIQN KAMR RMKSKES EEEKS
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGE---MKLVFALIQNIKAMRGRMKSKESPEEEKS 60

Query: 61  KGVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQEEQEDKDKVG 117
           KGVWNPKFQPEDFIEDG YNNKSNIT+QLPAASSSTTK SN K+EQ+EQ+DK KVG
Sbjct: 61  KGVWNPKFQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHKVG 108

[Close]

BLAST of Lsi11G006560 vs. NCBI nr
Match: XP_038889662.1 (protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEEKS 60
           ME GRKRRKL     EEEEEED+D+E E   +KL FALIQN KAMR RMKSKES EEEKS
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGE---MKLVFALIQNIKAMRGRMKSKESPEEEKS 60

Query: 61  KGVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQEEQEDKDK 115
           KGVWNPKFQPEDFIEDG YNNKSNIT+QLPAASSSTTK SN K+EQ+EQ+DK K
Sbjct: 61  KGVWNPKFQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHK 106

[Close]

BLAST of Lsi11G006560 vs. NCBI nr
Match: XP_038889661.1 (protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEEKS 60
           ME GRKRRKL     EEEEEED+D+E E   +KL FALIQN KAMR RMKSKES EEEKS
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGE---MKLVFALIQNIKAMRGRMKSKESPEEEKS 60

Query: 61  KGVWNPKFQPEDFIEDGNYNNKSNITIQLPAASSSTTKQSNEKREQEEQEDKDK 115
           KGVWNPKFQPEDFIEDG YNNKSNIT+QLPAASSSTTK SN K+EQ+EQ+DK K
Sbjct: 61  KGVWNPKFQPEDFIEDGYYNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHK 106

[Close]

BLAST of Lsi11G006560 vs. NCBI nr
Match: KAG6599168.1 (hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 92/140 (65.71%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEK--EEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMKSKESAEEE 60
           MEGGRKRRKLQN E+  ++EEE++++DEDEEEK+KLFFALIQNTKAMRD++KSKESAEE+
Sbjct: 1   MEGGRKRRKLQNIEEDDDDEEEDEDEDEDEEEKMKLFFALIQNTKAMRDKIKSKESAEED 60

Query: 61  K-SKGVWNPKFQPEDFIEDG--NYNNKSNITIQLPAASSSTTKQSNEKRE-------QEE 120
             +KGVWNPKFQPEDFIEDG   + +KS   I+L AASSS TKQSN+K E       QE 
Sbjct: 61  NPTKGVWNPKFQPEDFIEDGFDTHKSKSKAAIELGAASSSATKQSNQKEEHQEHQEHQEH 120

Query: 121 QEDKDKVGKGKNGLDLNLSL 129
           QE ++++ + K GLDLNLSL
Sbjct: 121 QEHQEQLEEPKKGLDLNLSL 140

[Close]

BLAST of Lsi11G006560 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_021295 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 94/132 (71.21%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 1   MEGGRKRRKLQNNEKEEEEEEDNDDEDEEEKIKLFFALIQNTKAMRDRMK-SKESAEEEK 60
           ME GRKRRKLQ    EEEEEE      E+EK++LF+ALIQNTKAMRD MK SKE  EEEK
Sbjct: 1   MESGRKRRKLQ----EEEEEE------EDEKMELFYALIQNTKAMRDGMKYSKELTEEEK 60

Query: 61  SKGVWNPKFQPEDF-IEDG-NYNNKSN-ITIQLPAASSSTTKQSNEKREQEEQEDKDKVG 120
           SKGVWNPKFQPEDF  EDG NYNNKSN I +QL AASSSTTKQ NEK++QEE +   KV 
Sbjct: 61  SKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHY-KVV 120

Query: 121 KGKNGLDLNLSL 129
           + K GLDLNLSL
Sbjct: 121 EVKKGLDLNLSL 121

The following BLAST results are available for this feature:

BLAST of Lsi11G006560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G006560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ23	1.3e-27	71.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1	[more]
A0A6J1DQG7	5.5e-23	62.02	LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia...	[more]
A0A061F4Z3	7.9e-14	46.10	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1	[more]
A0A6P9EP42	1.6e-11	42.66	protein NIM1-INTERACTING 1-like OS=Juglans regia OX=51240 GN=LOC108987715 PE=3 S...	[more]
A0A1U8I688	2.8e-11	41.50	bromodomain-containing protein 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107893...	[more]

BLAST of Lsi11G006560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889660.1	1.1e-33	78.45	protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida]	[more]
XP_038889662.1	2.1e-32	78.07	protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida]	[more]
XP_038889661.1	2.1e-32	78.07	protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida]	[more]
KAG6599168.1	2.3e-31	65.71	hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN61024.1	2.6e-27	71.21	hypothetical protein Csa_021295 [Cucumis sativus]	[more]

BLAST of Lsi11G006560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..30
None	No IPR available	COILS	Coil	Coil	coord: 121..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33669:SF4	PROTEIN NIM1-INTERACTING 3	coord: 4..128
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 24..125 e-value: 1.6E-18 score: 67.3
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 4..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006560.1	Lsi11G006560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus