Lsi11G005940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G005940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Multiple epidermal growth factor-like domains protein 8
Location	chr11: 6289280 .. 6289845 (+)
RNA-Seq Expression	Lsi11G005940
Synteny	Lsi11G005940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTGAGGTATCGATTGAGCATATTTTCAGTTCAACAGTATAGATCCGTCAAATTGCAAGATAAATCCGAGCTGCCGGCTATTTCTTAAGCAAAATCAACAGTATGTTTCTCATTAAGCGATTTATAAGAACAAATTAGAATCTCAATTGGATCGGCAGCCTACAGTTTAAACACTTTTAATCAAGAAAAATTTTAATCGAATACTCAATATTCCATGATTGTCTTATAATTAGGCTTTCGAGTTCAAGTTTATCGAGTTCGATTATGTGTCCGCCATGGAATAAAAAGGCCGTAGCGTACCCTTGTTGCCGGAGCTAGGTCGACCAGAAAACGTTGAGTGTTTCCGAAGCTTGCCTAGGCCACTTTCCGGCCGCGGTCCGGCGACAGTATCGTCCCAGAGCTGGTCGAGTAAGCCCATAAGGAACGGCGAATCAGAGGAAAAGGGAAGAAATGGCCGAAGGTTGAAGTTCCGACACGGCGGAGGAAGAGGCGGGTCTGAGTATGGAAGAGCTTTAAAGGGGCAGTGGGAACGATATTTAAAGAGAAATTTGAGGAGTTAA

mRNA sequence

ATGAACGTACCCTTGTTGCCGGAGCTAGGTCGACCAGAAAACGTTGAGTGTTTCCGAAGCTTGCCTAGGCCACTTTCCGGCCGCGGTCCGGCGACAGTATCGTCCCAGAGCTGGTCGAGTAAGCCCATAAGGAACGGCGAATCAGAGGAAAAGGGAAGAAATGGCCGAAGGTTGAAGTTCCGACACGGCGGAGGAAGAGGCGGGTCTGAGTATGGAAGAGCTTTAAAGGGGCAGTGGGAACGATATTTAAAGAGAAATTTGAGGAGTTAA

Coding sequence (CDS)

ATGAACGTACCCTTGTTGCCGGAGCTAGGTCGACCAGAAAACGTTGAGTGTTTCCGAAGCTTGCCTAGGCCACTTTCCGGCCGCGGTCCGGCGACAGTATCGTCCCAGAGCTGGTCGAGTAAGCCCATAAGGAACGGCGAATCAGAGGAAAAGGGAAGAAATGGCCGAAGGTTGAAGTTCCGACACGGCGGAGGAAGAGGCGGGTCTGAGTATGGAAGAGCTTTAAAGGGGCAGTGGGAACGATATTTAAAGAGAAATTTGAGGAGTTAA

Protein sequence

MNVPLLPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPIRNGESEEKGRNGRRLKFRHGGGRGGSEYGRALKGQWERYLKRNLRS

Homology

[Close]

BLAST of Lsi11G005940 vs. ExPASy TrEMBL
Match: A0A444C3G5 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00058323 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 4   PLLPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           PL PELGR    ECFR  PRP+SGRGPATVSSQSWS +PI
Sbjct: 66  PLPPELGRKPKDECFRRRPRPVSGRGPATVSSQSWSRRPI 105

[Close]

BLAST of Lsi11G005940 vs. ExPASy TrEMBL
Match: A0A5A7RCI5 (Multiple epidermal growth factor-like domains protein 8 OS=Striga asiatica OX=4170 GN=STAS_33069 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPE GR   VECF SLPRP+SGRGPATVSSQSWSS+ I
Sbjct: 101 LPEFGRKLKVECFLSLPRPVSGRGPATVSSQSWSSRLI 138

[Close]

BLAST of Lsi11G005940 vs. ExPASy TrEMBL
Match: I3SZY5 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

[Close]

BLAST of Lsi11G005940 vs. ExPASy TrEMBL
Match: I3SDZ7 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

[Close]

BLAST of Lsi11G005940 vs. ExPASy TrEMBL
Match: B7FM97 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

[Close]

BLAST of Lsi11G005940 vs. NCBI nr
Match: RWV80411.1 (hypothetical protein GW17_00058323 [Ensete ventricosum] >RWW35398.1 hypothetical protein BHE74_00059678 [Ensete ventricosum])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 4   PLLPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           PL PELGR    ECFR  PRP+SGRGPATVSSQSWS +PI
Sbjct: 66  PLPPELGRKPKDECFRRRPRPVSGRGPATVSSQSWSRRPI 105

[Close]

BLAST of Lsi11G005940 vs. NCBI nr
Match: GER55415.1 (multiple epidermal growth factor-like domains protein 8 [Striga asiatica])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPE GR   VECF SLPRP+SGRGPATVSSQSWSS+ I
Sbjct: 101 LPEFGRKLKVECFLSLPRPVSGRGPATVSSQSWSSRLI 138

[Close]

BLAST of Lsi11G005940 vs. NCBI nr
Match: AFK38489.1 (unknown [Medicago truncatula])

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

[Close]

BLAST of Lsi11G005940 vs. NCBI nr
Match: ACJ85880.1 (unknown [Medicago truncatula])

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

[Close]

BLAST of Lsi11G005940 vs. NCBI nr
Match: AFK45827.1 (unknown [Medicago truncatula])

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-05
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 6   LPELGRPENVECFRSLPRPLSGRGPATVSSQSWSSKPI 44
           LPEL R   V CFRSL RP SGRGPATVSS +WS +PI
Sbjct: 94  LPELDRAAKVLCFRSLLRPFSGRGPATVSSHNWSRRPI 131

The following BLAST results are available for this feature:

BLAST of Lsi11G005940 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G005940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444C3G5	2.9e-07	75.00	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00058323 PE=4 SV=1	[more]
A0A5A7RCI5	6.5e-07	78.95	Multiple epidermal growth factor-like domains protein 8 OS=Striga asiatica OX=41...	[more]
I3SZY5	4.7e-05	71.05	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
I3SDZ7	4.7e-05	71.05	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
B7FM97	4.7e-05	71.05	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]

BLAST of Lsi11G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
RWV80411.1	6.0e-07	75.00	hypothetical protein GW17_00058323 [Ensete ventricosum] >RWW35398.1 hypothetical...	[more]
GER55415.1	1.3e-06	78.95	multiple epidermal growth factor-like domains protein 8 [Striga asiatica]	[more]
AFK38489.1	9.6e-05	71.05	unknown [Medicago truncatula]	[more]
ACJ85880.1	9.6e-05	71.05	unknown [Medicago truncatula]	[more]
AFK45827.1	9.6e-05	71.05	unknown [Medicago truncatula]	[more]

BLAST of Lsi11G005940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005940.1	Lsi11G005940.1	mRNA