Lsi11G005770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G005770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PsbP domain-containing protein 7
Location	chr11: 6135290 .. 6139154 (+)
RNA-Seq Expression	Lsi11G005770
Synteny	Lsi11G005770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATTTCCGGCGGAGCATAACATCGGCGCAGTCGTCGTCTGACGACCCTGCCGGAAAATCTGCGGCGGAGGAATTTGGCCCGATGGCAGTGACGTTTCGGCGGAGGCTAATTGTGGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGTGCAAATTTCGCCGGTGTGACGAGTTTTCTGCTCGGTTTGTCGCCGGAAAACAGTCGACGATTGAGACTTGATGTTGTTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGGTCAGTGACTTCTCTCTTCTCCAACATACAAAGTTTTCTTCGGATAATTCGATTTATTTTTTATTTTATTTTCTTCTTGAAATTTCTCTCTTGCGAGGGGTGAGGTCATAATATAAATACACATAAACTAGTCTTGTTAAATTGCAGTTAAAATATAATTTTGGTCTCAAATTTAAGTCTATATATTTTTTAAAGGCAGATTTTAAATATAGTAAAATGAATTAACTTATAATGTTACCGGGATAGACTACTATCATCTATCAGATGTAATAGATACTAATAAATGTCTATTAGTGTCTATCACAAATAATTATCTTATTTTTAAATTTTAATTTTTAATCATTAAAGTTAATTTTTTAAAAAAATTGATTAAATAATAATAATATTTTTTATACATGAAATTACACTATGTAAAAATATTTTCAAAATTTATAGTGAAAAAGGCTAATAGATAATAAGAATTTATTTAAAAATCAACAATAAACTTGAAGTATGAAGTCAATTTAAAATTACTAAAAACCCAACGCTAAAATTGGACCTTTCAAATTAGATATTTGATAGTATAAAAATACTGAAATTAAACTAGTTAAACTAATTTTAAAGTATATAGACCAAAATGATATTTTAATCTTAAATTAATGAATAGATTTATTAATGAATAGATTTCATGTTAAGTATGCTTAGACTGACACATAAATTTGAATTTTGTATCTATTAGTTTCATCGACTTTCAAAAGTATAATAAATTTCTAACAAATTCAAATTTTTTTAAAAGAATTAATCGATATTTTAAATATAAATATAAATTTTATGTTTAATGGAATCTAAAAGTTTCAATTTTGAGTATGATAATCCAAAGACTACATTTGCAAGTTCAAAAGTTGAAGAACAAAATAGATTGAAACTTCAAAATTGGAAGATTAGTTTGTAATTTAACCAAACAAGAAATTATCTTCCGTTCATTTCAATATATCTATTCCATTAGTGTTTTATTTTTATGTAGGTTTTTTTTAAACCGATTCATGTAGGTGTAATTAATGTATGTAAACAACAATCATTTCTTATATTGCGTTTTTTTTTCTTTTTTTGTTTTAGACAAACTTTTATTGCGTTCACTTCGTTATCGTTTTTTAAAATGTTGTATACCATCATATCACAAACAAAGCCAATAATTTCATTTGTTTAAATATTTCATATTGATTTAACGGTAATTTTTAATCGTTAGCACTAATTTTTGGTAAATCAAATAATAAAGATTTCACGTGTCAGTTAAATGAAATATGTATAATGGACTCGAAAAAAAAATCTAAAATTGTTCTTTTATTATTATTATTATTTTTACATACATTTGTTCTTAAATTTCGAGCTATTTGGGTAATGTTAGGACATTTAGTTCCACAGTTTACGAGTCAGATGGTATTTTCTTATATTATGTTATATATATCTAAAAATACTCCTAATGGATTGCATCTTATGGTTTTTTCATTATCAATGTGCACTGCCTAAGAAATTCTGTTTAAAGAACATTCAGAGTTCATATACCCAGCGACTTGGGTAGGAGACCAGAGGTTGCTATATCGGGCAGCTGAAAAGTCGGAATATGAACGATCATTGGACCCTCCACCCTTGACCGGTTCCACCATGGATCTCCGTCGTCGGAATGTTAATGAGCCAATGGTTGCATTTGGTCCTCCGGGTTCGAGTGGAGAGCTCAATGTTAGTGTCATTGTGTCTCCGGTACCTCTTGATTTTTCGTAAGCTACCTAACTTATCTATGATTACTTCAAAAATATGACTTACGTCCTACCATGCAAATGGATATTCAAAATCTTTCAATCCTTCCACATTCTAACATACAAGGTAGGAATTGATCAAAATGTCCTAGATTTAAGATATTTCAAAAATTCATTAGGAGATGTTTAATTCTAGTTAATGGAATCTGAGGTTGATTAATCTGAATTTGTATAATCTATATTTAGATCGTAAAGGAGTTTGGTTATAAAAAAAAAAACTAAGGTCCCATATAGCCTATATTTGATTCGTGTGTTCATGATTTACGTAACTATTAGGTTGTAAAAATAAAAATGTGGGCACCATAGACTTCAATTCACAGACTCGACTTCTTAAACTTCATCTACACATGACTAACATGTTAACCAAACACCTCCTGAGAGTGACCAATAGAAGGCAAAAGCTATAGGCCCATTCAAGATTCAGTGTTGTAATGTTCCAATTGTCGGATCTCGTCTTAGGTTCAGAATTTAATTTCTATACACTATGTTGAAAGGAGATAGTTCAAAACGAAATGAGTCTTAGGTTCAGAATTTAATTTCTATGTACTACGTCGAAAGGAGATAGTTCAAAACGGAATGAACCTACAAGGACGGTGGTTGTTAATCAAGGCAAGAGAGAGTTTGAAATTTTGCTAGTAGGGCTTGCCTAATTCAAATGAAATTTGATTCTGAATGGTTCTTTTTCCTTCTTTTTTTTTTTTTTTTTTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTGGTTATTTGGATTACTACAAAGAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACTATTACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACCTTGATACAAACAACTCTGAGAGAGGATTTCCTAACCAAATACTATCAACTTGAATTCAAAGTGGAAAGCTCGTCGTTTCGGCGGCACAACATTGCTGTTTGTTGTGCTCGTCGGGGCAAATTATATACACTGAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAAATGAAGGCAATTGCCAATTCTTTTTGTCTCTCAGCTTGAAGGTTCTTATGTAGTATTACTGTGGGGTGGGGTTTGGGAATTTTTTGGAGGGGGCACTATAAAATTTAGAAGAATGTAAAACTCATTATCTTACCATTTATAAAACTATATTGGAGATGTTACAATGTT

mRNA sequence

ATGATGAATTTCCGGCGGAGCATAACATCGGCGCAGTCGTCGTCTGACGACCCTGCCGGAAAATCTGCGGCGGAGGAATTTGGCCCGATGGCAGTGACGTTTCGGCGGAGGCTAATTGTGGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGTGCAAATTTCGCCGGTGTGACGAGTTTTCTGCTCGGTTTGTCGCCGGAAAACAGTCGACGATTGAGACTTGATGTTGTTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGAGTTCATATACCCAGCGACTTGGGTAGGAGACCAGAGGTTGCTATATCGGGCAGCTGAAAAGTCGGAATATGAACGATCATTGGACCCTCCACCCTTGACCGGTTCCACCATGGATCTCCGTCGTCGGAATGTTAATGAGCCAATGGTTGCATTTGGTCCTCCGGGTTCGAGTGGAGAGCTCAATGTTAGTGTCATTGTGTCTCCGGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACTATTACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACCTTGATACAAACAACTCTGAGAGAGGATTTCCTAACCAAATACTATCAACTTGAATTCAAAGTGGAAAGCTCGTCGTTTCGGCGGCACAACATTGCTGTTTGTTGTGCTCGTCGGGGCAAATTATATACACTGAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAAATGAAGGCAATTGCCAATTCTTTTTGTCTCTCAGCTTGAAGGTTCTTATGTAGTATTACTGTGGGGTGGGGTTTGGGAATTTTTTGGAGGGGGCACTATAAAATTTAGAAGAATGTAAAACTCATTATCTTACCATTTATAAAACTATATTGGAGATGTTACAATGTT

Coding sequence (CDS)

ATGATGAATTTCCGGCGGAGCATAACATCGGCGCAGTCGTCGTCTGACGACCCTGCCGGAAAATCTGCGGCGGAGGAATTTGGCCCGATGGCAGTGACGTTTCGGCGGAGGCTAATTGTGGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGTGCAAATTTCGCCGGTGTGACGAGTTTTCTGCTCGGTTTGTCGCCGGAAAACAGTCGACGATTGAGACTTGATGTTGTTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGAGTTCATATACCCAGCGACTTGGGTAGGAGACCAGAGGTTGCTATATCGGGCAGCTGAAAAGTCGGAATATGAACGATCATTGGACCCTCCACCCTTGACCGGTTCCACCATGGATCTCCGTCGTCGGAATGTTAATGAGCCAATGGTTGCATTTGGTCCTCCGGGTTCGAGTGGAGAGCTCAATGTTAGTGTCATTGTGTCTCCGGTACCTCTTGATTTTTCAATTGAAGCATTTGGAGGTCCAAATGAAGTAGGGGAAGCTGTGATCAGGACTATTACAAGGGCCAGCAAACGCTCTGATCTTAAAGGAACCTTGATACAAACAACTCTGAGAGAGGATTTCCTAACCAAATACTATCAACTTGAATTCAAAGTGGAAAGCTCGTCGTTTCGGCGGCACAACATTGCTGTTTGTTGTGCTCGTCGGGGCAAATTATATACACTGAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAAATGAAGGCAATTGCCAATTCTTTTTGTCTCTCAGCTTGA

Protein sequence

MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLYTLNAQAPESEWPGLKSEMKAIANSFCLSA

Homology

[Close]

BLAST of Lsi11G005770 vs. ExPASy Swiss-Prot
Match: F4J7A7 (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD7 PE=2 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.9e-92
Identity = 170/257 (66.15%), Postives = 203/257 (78.99%), Query Frame = 0


Query: 11  AQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSR 70
           AQ  S D    + AEEF P+   F RRL++G+GS+S++A+GANF G TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 71  RLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDPPPLTGST 130
            L+LDV+YPIGGYSRC+D  EGFEFIYPATWVGDQ LLYRAAEKSE E SLD PP   S 
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPPARNS- 144

Query: 131 MDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTITRAS 190
              RR+NVNEP+VAFGPPGS+GELNVSVIVSPV   FSIEAFGGP EVGEA++RT+T + 
Sbjct: 145 ---RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSG 204

Query: 191 KRSDLKGTLIQTTLREDF--LTKYYQLEFKVESSSFRRHNIAVCCARRGKLYTLNAQAPE 250
           +R+DLKGTL+++++R+D     KYY+LEFKVES  FRRHN+AVCCA  G+LYTLNAQAPE
Sbjct: 205 QRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPE 264

Query: 251 SEWPGLKSEMKAIANSF 266
           S W  +KSE+   A SF
Sbjct: 265 SAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL
Match: A0A0A0LGE5 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.0e-136
Identity = 245/269 (91.08%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+N RR+I SAQSSSDDPAGKSAAEEF P+AVTFRRRLIVGIGSASLVA+GANF GVTSF
Sbjct: 12  MINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLR+DVVYPIGGYSRC+D NEGFEFIYP++WVGDQRLLYRAAEK EYERS
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKLEYERS 131

Query: 121 LDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 180
           LDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE
Sbjct: 132 LDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 191

Query: 181 AVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLY 240
           AVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++FRRHNIAVCCARRGKLY
Sbjct: 192 AVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNIAVCCARRGKLY 251

Query: 241 TLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           TLNAQAPESEW GLKS+MK IANSFCLSA
Sbjct: 252 TLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL
Match: A0A5A7TYH2 (PsbP domain-containing protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00860 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 8.5e-135
Identity = 243/269 (90.33%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+NFRRSI  AQSSSDDPAGKSAAEEF P+A TFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLR+DVVYPIGGY+RC D NEGFEFIYP++WVGDQRLLYR AEKSEYERS
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEFIYPSSWVGDQRLLYREAEKSEYERS 131

Query: 121 LDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 180
           LDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSIEAFGGPNEVGE
Sbjct: 132 LDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSIEAFGGPNEVGE 191

Query: 181 AVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLY 240
           AVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++F+RHNIAVCCARRGKLY
Sbjct: 192 AVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNIAVCCARRGKLY 251

Query: 241 TLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           TLNAQAPESEWPGLKS+MK IA+SFCLSA
Sbjct: 252 TLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL
Match: A0A1S3BYG5 (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 8.5e-135
Identity = 243/269 (90.33%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+NFRRSI  AQSSSDDPAGKSAAEEF P+A TFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLR+DVVYPIGGY+RC D NEGFEFIYP++WVGDQRLLYR AEKSEYERS
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEFIYPSSWVGDQRLLYREAEKSEYERS 131

Query: 121 LDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 180
           LDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSIEAFGGPNEVGE
Sbjct: 132 LDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSIEAFGGPNEVGE 191

Query: 181 AVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLY 240
           AVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++F+RHNIAVCCARRGKLY
Sbjct: 192 AVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNIAVCCARRGKLY 251

Query: 241 TLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           TLNAQAPESEWPGLKS+MK IA+SFCLSA
Sbjct: 252 TLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL
Match: A0A1S4E131 (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.6e-133
Identity = 243/272 (89.34%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+NFRRSI  AQSSSDDPAGKSAAEEF P+A TFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGF---EFIYPATWVGDQRLLYRAAEKSEY 120
           LLGLSPENSRRLR+DVVYPIGGY+RC D NEGF   EFIYP++WVGDQRLLYR AEKSEY
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQRLLYREAEKSEY 131

Query: 121 ERSLDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNE 180
           ERSLDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSIEAFGGPNE
Sbjct: 132 ERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSIEAFGGPNE 191

Query: 181 VGEAVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRG 240
           VGEAVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++F+RHNIAVCCARRG
Sbjct: 192 VGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNIAVCCARRG 251

Query: 241 KLYTLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           KLYTLNAQAPESEWPGLKS+MK IA+SFCLSA
Sbjct: 252 KLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL
Match: A0A6J1DA91 (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018801 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 9.1e-129
Identity = 236/268 (88.06%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 4   FRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLG 63
           FRRSITSAQS SDDPAGKSAAE+F P+AVTFRRRL VGIGSASLVAVGAN AG+TSFLLG
Sbjct: 15  FRRSITSAQSPSDDPAGKSAAEQFAPLAVTFRRRLTVGIGSASLVAVGANLAGITSFLLG 74

Query: 64  LSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDP 123
            SPENSRRLRLDVVYPIGGYSRC +ANEGF+FIYP +WVGDQRLLYRAAEKSE+ERSLDP
Sbjct: 75  FSPENSRRLRLDVVYPIGGYSRCFEANEGFQFIYPESWVGDQRLLYRAAEKSEFERSLDP 134

Query: 124 PPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVI 183
           PPLT ST D RRRNVNEP+VAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGP EVGEAVI
Sbjct: 135 PPLTTSTADRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPKEVGEAVI 194

Query: 184 RTITRASKRSDLKGTLIQTTLREDFL--TKYYQLEFKVESSSFRRHNIAVCCARRGKLYT 243
           RTIT+ASKR DLKGTLIQTTLRED     KYY+LEFKVESSSF+RHNIAVCCARRGKLYT
Sbjct: 195 RTITKASKRPDLKGTLIQTTLREDLQRNVKYYELEFKVESSSFQRHNIAVCCARRGKLYT 254

Query: 244 LNAQAPESEWPGLKSEMKAIANSFCLSA 270
           LNAQAPESEWP LK E+K IANSFCLSA
Sbjct: 255 LNAQAPESEWPVLKPEIKTIANSFCLSA 282

[Close]

BLAST of Lsi11G005770 vs. NCBI nr
Match: XP_038889473.1 (psbP domain-containing protein 7, chloroplastic [Benincasa hispida])

HSP 1 Score: 497.7 bits (1280), Expect = 6.5e-137
Identity = 254/270 (94.07%), Postives = 258/270 (95.56%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           MMNF RS  SAQ  SDDPAGKSAAEEF P+AVTFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MMNFPRSTISAQWPSDDPAGKSAAEEFTPLAVTFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPA+WVGDQRLLYRAAEKSEYERS
Sbjct: 72  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPASWVGDQRLLYRAAEKSEYERS 131

Query: 121 LDPPPLTGSTMDLRRR-NVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVG 180
           LDPPPLTGSTMD RRR NVNEP+VAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVG
Sbjct: 132 LDPPPLTGSTMDRRRRQNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVG 191

Query: 181 EAVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKL 240
           EAVIRTITRASKRSDLKGTLIQTTLRED L KYY+LEFKVESSSFRRHNIAVCCARRGKL
Sbjct: 192 EAVIRTITRASKRSDLKGTLIQTTLREDLLGKYYELEFKVESSSFRRHNIAVCCARRGKL 251

Query: 241 YTLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           YTLNAQAPESEW GLKSEMK IANSFCLSA
Sbjct: 252 YTLNAQAPESEWLGLKSEMKTIANSFCLSA 281

[Close]

BLAST of Lsi11G005770 vs. NCBI nr
Match: XP_004144823.1 (psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >XP_031736676.1 psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >KGN60943.1 hypothetical protein Csa_021222 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 4.2e-136
Identity = 245/269 (91.08%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+N RR+I SAQSSSDDPAGKSAAEEF P+AVTFRRRLIVGIGSASLVA+GANF GVTSF
Sbjct: 12  MINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVAIGANFGGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLR+DVVYPIGGYSRC+D NEGFEFIYP++WVGDQRLLYRAAEK EYERS
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGFEFIYPSSWVGDQRLLYRAAEKLEYERS 131

Query: 121 LDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 180
           LDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE
Sbjct: 132 LDPPPLTDSTMDRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 191

Query: 181 AVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLY 240
           AVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++FRRHNIAVCCARRGKLY
Sbjct: 192 AVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFRRHNIAVCCARRGKLY 251

Query: 241 TLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           TLNAQAPESEW GLKS+MK IANSFCLSA
Sbjct: 252 TLNAQAPESEWAGLKSKMKTIANSFCLSA 280

[Close]

BLAST of Lsi11G005770 vs. NCBI nr
Match: XP_008454379.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo] >KAA0048018.1 psbP domain-containing protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 243/269 (90.33%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+NFRRSI  AQSSSDDPAGKSAAEEF P+A TFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERS 120
           LLGLSPENSRRLR+DVVYPIGGY+RC D NEGFEFIYP++WVGDQRLLYR AEKSEYERS
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEFIYPSSWVGDQRLLYREAEKSEYERS 131

Query: 121 LDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGE 180
           LDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSIEAFGGPNEVGE
Sbjct: 132 LDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSIEAFGGPNEVGE 191

Query: 181 AVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRGKLY 240
           AVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++F+RHNIAVCCARRGKLY
Sbjct: 192 AVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNIAVCCARRGKLY 251

Query: 241 TLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           TLNAQAPESEWPGLKS+MK IA+SFCLSA
Sbjct: 252 TLNAQAPESEWPGLKSKMKTIASSFCLSA 280

[Close]

BLAST of Lsi11G005770 vs. NCBI nr
Match: XP_008454371.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901931.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901934.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 484.2 bits (1245), Expect = 7.4e-133
Identity = 243/272 (89.34%), Postives = 256/272 (94.12%), Query Frame = 0


Query: 1   MMNFRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSF 60
           M+NFRRSI  AQSSSDDPAGKSAAEEF P+A TFRRRLIVGIGSASLVAVGANFAGVTSF
Sbjct: 12  MINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVAVGANFAGVTSF 71

Query: 61  LLGLSPENSRRLRLDVVYPIGGYSRCLDANEGF---EFIYPATWVGDQRLLYRAAEKSEY 120
           LLGLSPENSRRLR+DVVYPIGGY+RC D NEGF   EFIYP++WVGDQRLLYR AEKSEY
Sbjct: 72  LLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGFEHPEFIYPSSWVGDQRLLYREAEKSEY 131

Query: 121 ERSLDPPPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNE 180
           ERSLDPPPLT STMD RRRNVNEP+VAFGPPGSSGELNVSVIVS VP DFSIEAFGGPNE
Sbjct: 132 ERSLDPPPLTNSTMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSSVPPDFSIEAFGGPNE 191

Query: 181 VGEAVIRTITRASKRSDLKGTLIQTTLREDFLTKYYQLEFKVESSSFRRHNIAVCCARRG 240
           VGEAVIRTITRASKRSDLKGTLIQTTLRED LTKYY+LEFKVES++F+RHNIAVCCARRG
Sbjct: 192 VGEAVIRTITRASKRSDLKGTLIQTTLREDLLTKYYELEFKVESTAFQRHNIAVCCARRG 251

Query: 241 KLYTLNAQAPESEWPGLKSEMKAIANSFCLSA 270
           KLYTLNAQAPESEWPGLKS+MK IA+SFCLSA
Sbjct: 252 KLYTLNAQAPESEWPGLKSKMKTIASSFCLSA 283

[Close]

BLAST of Lsi11G005770 vs. NCBI nr
Match: XP_022150743.1 (psbP domain-containing protein 7, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 1.9e-128
Identity = 236/268 (88.06%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 4   FRRSITSAQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLG 63
           FRRSITSAQS SDDPAGKSAAE+F P+AVTFRRRL VGIGSASLVAVGAN AG+TSFLLG
Sbjct: 15  FRRSITSAQSPSDDPAGKSAAEQFAPLAVTFRRRLTVGIGSASLVAVGANLAGITSFLLG 74

Query: 64  LSPENSRRLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDP 123
            SPENSRRLRLDVVYPIGGYSRC +ANEGF+FIYP +WVGDQRLLYRAAEKSE+ERSLDP
Sbjct: 75  FSPENSRRLRLDVVYPIGGYSRCFEANEGFQFIYPESWVGDQRLLYRAAEKSEFERSLDP 134

Query: 124 PPLTGSTMDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVI 183
           PPLT ST D RRRNVNEP+VAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGP EVGEAVI
Sbjct: 135 PPLTTSTADRRRRNVNEPVVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPKEVGEAVI 194

Query: 184 RTITRASKRSDLKGTLIQTTLREDFL--TKYYQLEFKVESSSFRRHNIAVCCARRGKLYT 243
           RTIT+ASKR DLKGTLIQTTLRED     KYY+LEFKVESSSF+RHNIAVCCARRGKLYT
Sbjct: 195 RTITKASKRPDLKGTLIQTTLREDLQRNVKYYELEFKVESSSFQRHNIAVCCARRGKLYT 254

Query: 244 LNAQAPESEWPGLKSEMKAIANSFCLSA 270
           LNAQAPESEWP LK E+K IANSFCLSA
Sbjct: 255 LNAQAPESEWPVLKPEIKTIANSFCLSA 282

[Close]

BLAST of Lsi11G005770 vs. TAIR 10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 339.7 bits (870), Expect = 2.1e-93
Identity = 170/257 (66.15%), Postives = 203/257 (78.99%), Query Frame = 0


Query: 11  AQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSR 70
           AQ  S D    + AEEF P+   F RRL++G+GS+S++A+GANF G TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 71  RLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDPPPLTGST 130
            L+LDV+YPIGGYSRC+D  EGFEFIYPATWVGDQ LLYRAAEKSE E SLD PP   S 
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPPARNS- 144

Query: 131 MDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFSIEAFGGPNEVGEAVIRTITRAS 190
              RR+NVNEP+VAFGPPGS+GELNVSVIVSPV   FSIEAFGGP EVGEA++RT+T + 
Sbjct: 145 ---RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSG 204

Query: 191 KRSDLKGTLIQTTLREDF--LTKYYQLEFKVESSSFRRHNIAVCCARRGKLYTLNAQAPE 250
           +R+DLKGTL+++++R+D     KYY+LEFKVES  FRRHN+AVCCA  G+LYTLNAQAPE
Sbjct: 205 QRADLKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPE 264

Query: 251 SEWPGLKSEMKAIANSF 266
           S W  +KSE+   A SF
Sbjct: 265 SAWSEVKSEIYTTAKSF 276

[Close]

BLAST of Lsi11G005770 vs. TAIR 10
Match: AT3G05410.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-54
Identity = 107/158 (67.72%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 11  AQSSSDDPAGKSAAEEFGPMAVTFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSR 70
           AQ  S D    + AEEF P+   F RRL++G+GS+S++A+GANF G TSF+LGLSP   R
Sbjct: 25  AQQPSGD-LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGR 84

Query: 71  RLRLDVVYPIGGYSRCLDANEGFEFIYPATWVGDQRLLYRAAEKSEYERSLDPPPLTGST 130
            L+LDV+YPIGGYSRC+D  EGFEFIYPATWVGDQ LLYRAAEKSE E SLD PP   S 
Sbjct: 85  NLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPPARNS- 144

Query: 131 MDLRRRNVNEPMVAFGPPGSSGELNVSVIVSPVPLDFS 169
              RR+NVNEP+VAFGPPGS+GELNVSVIVSPV   FS
Sbjct: 145 ---RRKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFS 177

The following BLAST results are available for this feature:

BLAST of Lsi11G005770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4J7A7	2.9e-92	66.15	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi11G005770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGE5	2.0e-136	91.08	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 S...	[more]
A0A5A7TYH2	8.5e-135	90.33	PsbP domain-containing protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3BYG5	8.5e-135	90.33	psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S4E131	3.6e-133	89.34	psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1DA91	9.1e-129	88.06	psbP domain-containing protein 7, chloroplastic isoform X2 OS=Momordica charanti...	[more]

BLAST of Lsi11G005770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889473.1	6.5e-137	94.07	psbP domain-containing protein 7, chloroplastic [Benincasa hispida]	[more]
XP_004144823.1	4.2e-136	91.08	psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >XP_031736676....	[more]
XP_008454379.1	1.8e-134	90.33	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
XP_008454371.1	7.4e-133	89.34	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
XP_022150743.1	1.9e-128	88.06	psbP domain-containing protein 7, chloroplastic isoform X2 [Momordica charantia]	[more]

BLAST of Lsi11G005770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05410.2	2.1e-93	66.15	Photosystem II reaction center PsbP family protein	[more]
AT3G05410.1	1.5e-54	67.72	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 79..266 e-value: 1.3E-41 score: 144.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 8..267
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 8..267
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 141..265 e-value: 7.2E-24 score: 84.7
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 84..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005770.1	Lsi11G005770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding