Lsi11G004850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Acyl carrier protein
Location	chr11: 5112098 .. 5114432 (-)
RNA-Seq Expression	Lsi11G004850
Synteny	Lsi11G004850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCACGAACTTGCTTGCTTTGCTTTCTCCGTCCCATTTACACTTTTCGCCACTCCAAATTCTCTCTTCCTTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGTAAAATTTTCAATTCCTTTTTCTCTTTTCCTCATTGCGTGCGTTTAATGGATCCGTTGTACGATTTCTCATGTTTGTCATCTCTCGTTTTTTTCATTTTCTTCTTAATTCTAACCCTTTCGATCTCGATTTTTGCGTCGATTTCTCTTTCAATGTCGTTAATTACGAAGTTTGGAGCATTGGTTTGAATCGGTGTTGTGATTTTGTATTGCATGGCTATGAAACGTATGGATGATGGACTTCACATCACTTATTTGATTTCAGAATGTTTTATATCTCTTTATTGTGTTGTTTTACTTTTATTCGTGTTATTTCAATACTGATGTGAATTTCTTCCCTAATTTTCACCGCTATTTGGGGTCGGAGAGGTAGAAGGGAATAGTATTCGAACTATTTGCTCTCGTCTCCCTTCAAATTGCTTTCTAGGAAGTAACAGGACCAAAAGATAGGCCAACAGACCTTAAATTACGAGCGATCTTGAAATTCTTACATATGTTTACCGTTCTAGTTATGATGATGATCGCATCTGCCAACTTGAAGTCCTTATGTCCTGAAAAATTCTCTGTATTACTGTATGTGTGTGTTGATTATCATTTGTTTGTTGTTCTTTTTGAGTTTTCTCTCTGTTAAGAACTCGAGCTATATGAGACTAGATCATATATGTTCTGTGCCGAACATTTTGGTGAATTGTTTCTTGGTAAGCAGGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGTGAGTCCTTTTTGCTGCATGTTCTTCGGGAAACGCCAATTACTATTGCAATATGATGTTAACTGTGTGTGATATGGAACAGGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTAAAGTACTATACTGCATATGTTTCATAAAATTCACCCTTGGCATGTTTTTTTTTTATTTTATTTTAGGGAAATTTTCACGGATAGAAAAAAAATTAAAAAAAAAAACACCGTTTCTGTCACTAATAGACCGTGATAGACTTACAACTATCTAAAAATTTTTTGGGTAAATAGTTTTCCTTATTGTTCTATTTTTAAAAATTTCTCTTTATTTTATTTTATTTTAAGTTAAAAATATATAAATTACGACTCTTAAGTTGATATTATTTTTGGCTAAACTACGTCTATGTCAAATAGGTCTTTTAGGCTTTGCCAAGATGTGCATAGCTGATCAATCGGCATAAAAAAAAAGTAATATCAACTTCGAAGCCTGTTCCCATATTGTGTGGAAAAAAAAAAAATCCCTCAAGTCTTCCATATTATTAACATTATTATCCCAGAGCTAATAAATGTATACTACTTGAATTTTTTTCAAATCTACCAAGAAGATCGAGATGCTCAAAGTTCTAGAATTGTACTTATAATCTAATTTAAACTACTACTTGCACGAAAATGATTTTCCCAAAAAAACTTGTCACGGACGACCTACGTGTATGTTCCATGATGATATTGATATCGATGAGTATATCAATAAAATATTATTATCTATGATATTTTTGTAAATCATAAAAATTTACAATATTTATTTAAATTAATAATTAAGTAGTTTCTCCTTCCCACATATCCTTTTCAAAAAAAGAAAAAAATTGTTTTTACTTCTAAAACTACTATTTCATATTTCATATTTATATTGTTTTCTAAGTACTTTTTTCCACTCAGGTAAGTGTATTATGTATTATTTTGTTTAACGCACTAAATTTTACATGAAAATTAATGTAAAAGGAAGACAAATCATCAAAATTAACTTTAATGGGGGATGCATACAAGTTTTGGATATTAAATTTGACATGCAATGCAATAATATACATATATATATTGGTTGGATCAGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAAAAATATTCCCACTGCCTTAAGGGAGGGTGAGCTAAACAACCCCCCCCC

mRNA sequence

GGCCACGAACTTGCTTGCTTTGCTTTCTCCGTCCCATTTACACTTTTCGCCACTCCAAATTCTCTCTTCCTTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAAAAATATTCCCACTGCCTTAAGGGAGGGTGAGCTAAACAACCCCCCCCC

Coding sequence (CDS)

ATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAA

Protein sequence

MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKSA

Homology

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BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot
Match: P93092 (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-32
Identity = 88/140 (62.86%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLR--ISCAAK 60
           MAS+T +S  + S     +   A S++S  + VS   +G+ +    R++S R  + CAAK
Sbjct: 1   MASVTGTSISMAS----FKASLAPSRVSNLRSVSLPIKGK-SFAPLRMRSARFVVCCAAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETVEKV  IVKKQLALPDDS V GESKF+TLGADSLDTVEIVMGLEEEFGI+VEEESAQ
Sbjct: 61  PETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQ 120

Query: 121 SITTVQEAADMIEDLILKKS 139
           SI TVQ+AAD+IE LI KKS
Sbjct: 121 SIATVQDAADLIEKLIEKKS 135

[Close]

BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot
Match: P52412 (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-32
Identity = 87/133 (65.41%), Postives = 100/133 (75.19%), Query Frame = 0


Query: 6   ASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQ-SLRISCAAKPETVEK 65
           ASS C++SA   S    A  ++S  + VS     R + +SRR   SLR++C AKPETV K
Sbjct: 7   ASSICIKSA---SCSALAPGRISSLRSVSLPV-SRKSFFSRRGSFSLRVNCQAKPETVTK 66

Query: 66  VSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQ 125
           V  IVKKQLALPDDS V+G SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ
Sbjct: 67  VCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQ 126

Query: 126 EAADMIEDLILKK 138
           +AAD+IE L+ KK
Sbjct: 127 DAADLIEKLMEKK 135

[Close]

BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot
Match: P52414 (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-31
Identity = 88/138 (63.77%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MASITA-SSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKP 60
           MAS  A +S C++SA+        IS L  S  +  S +   +L S +    R+SC AKP
Sbjct: 1   MASAAAGASICIKSASCSPLAPGRISSLR-SVSLPVSRKSFPSLRSSKGSFARVSCQAKP 60

Query: 61  ETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 120
           ETV KV RIVKKQLALPDDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQS
Sbjct: 61  ETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQS 120

Query: 121 ITTVQEAADMIEDLILKK 138
           I TVQ+AAD+IE L+ KK
Sbjct: 121 IQTVQDAADLIEKLMEKK 137

[Close]

BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot
Match: P52411 (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.3e-30
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 0


Query: 1   MASITA-SSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQ-SLRISCAAK 60
           MAS  A +S C++SA+        IS L  S  +  S +   +L S +   +LR+SC AK
Sbjct: 1   MASAAAGASICIKSASFSPLAPGRISSLR-SVSLPVSRKSFPSLKSSKSSFALRVSCQAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETV KV  IVKKQLALPDDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQ
Sbjct: 61  PETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQ 120

Query: 121 SITTVQEAADMIEDLILKK 138
           SI TVQ+AAD+IE L+ KK
Sbjct: 121 SIQTVQDAADLIEKLMEKK 138

[Close]

BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot
Match: P52413 (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.1e-29
Identity = 81/139 (58.27%), Postives = 96/139 (69.06%), Query Frame = 0


Query: 2   ASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGR---NNLYSRRLQSLRISCAAK 61
           A+  +S  C++SA+    +    S LS  + VS    G+   +   SR   S R+ C AK
Sbjct: 4   AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAK 63

Query: 62  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 121
            ETV +V  IVKKQLALP+DS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQ
Sbjct: 64  QETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQ 123

Query: 122 SITTVQEAADMIEDLILKK 138
           SI TVQ+AAD+IE L+  K
Sbjct: 124 SIQTVQDAADLIEKLVGNK 142

[Close]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL
Match: A0A6J1G2R0 (Acyl carrier protein OS=Cucurbita moschata OX=3662 GN=LOC111450263 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.7e-58
Identity = 129/139 (92.81%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASSFC+RSAAPQSRQIAA+SKLSGSKRVSFSYQGRNN  SRRL+SL+ISCAAKPE
Sbjct: 1   MASITASSFCVRSAAPQSRQIAAVSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKK +
Sbjct: 121 TTVQEAADMIEDLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL
Match: A0A0A0LG91 (Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_2G013290 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS  LRSAAPQ RQIA  SKLSGS+RVSFS+QGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSLSLRSAAPQWRQIAGTSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAAD+IEDLILKK A
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

[Close]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL
Match: A0A6J1KDG5 (Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111493903 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASI+ASSFC+RSA PQSRQIAA+SKLSGSKRVSFSYQGRNN  SRRL+SL+ISCAAKPE
Sbjct: 1   MASISASSFCVRSAVPQSRQIAAVSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDSTVNGESKFSTLGADSLDTVEIVM LEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSTVNGESKFSTLGADSLDTVEIVMELEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADM+E LILKK +
Sbjct: 121 TTVQEAADMVEVLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL
Match: A0A6J1HQL1 (Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111465717 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.4e-55
Identity = 123/138 (89.13%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MAS++ASSFC+RSAAP+SRQI+  +KLSG KRVSFS+QGRN   SRRLQSL+ISCAAKPE
Sbjct: 1   MASVSASSFCVRSAAPRSRQISETAKLSGLKRVSFSHQGRNTFSSRRLQSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKS 139
           TTVQEAADMIEDLILKKS
Sbjct: 121 TTVQEAADMIEDLILKKS 138

[Close]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL
Match: A0A5A7V8V9 (Acyl carrier protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001580 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 125/139 (89.93%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS  LR+A P  RQIA  SKLSGS+ VSFSYQGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSLSLRTAPPHCRQIAGTSKLSGSRMVSFSYQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAAD+IEDLILKK A
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

[Close]

BLAST of Lsi11G004850 vs. NCBI nr
Match: XP_038889182.1 (acyl carrier protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS CLRSAAPQSRQIAAISK+SGSK VSFSYQGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSSCLRSAAPQSRQIAAISKISGSKTVSFSYQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKKSA
Sbjct: 121 TTVQEAADMIEDLILKKSA 139

[Close]

BLAST of Lsi11G004850 vs. NCBI nr
Match: XP_022946064.1 (acyl carrier protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 129/139 (92.81%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASSFC+RSAAPQSRQIAA+SKLSGSKRVSFSYQGRNN  SRRL+SL+ISCAAKPE
Sbjct: 1   MASITASSFCVRSAAPQSRQIAAVSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKK +
Sbjct: 121 TTVQEAADMIEDLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. NCBI nr
Match: KAG6599280.1 (Acyl carrier protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 7.6e-57
Identity = 128/139 (92.09%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASSFC+RSAAPQSRQIAA+SKLSGSKRVSFSYQGRN+  SRRL+SL+ISCAAKPE
Sbjct: 1   MASITASSFCVRSAAPQSRQIAAVSKLSGSKRVSFSYQGRNHFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKK +
Sbjct: 121 TTVQEAADMIEDLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. NCBI nr
Match: XP_023546824.1 (acyl carrier protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITAS FC+RSAAPQSRQIAA SKLSGSKRVSFSYQGRNN  SRRL+SL+ISCAAKPE
Sbjct: 1   MASITASLFCVRSAAPQSRQIAAGSKLSGSKRVSFSYQGRNNFSSRRLRSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKK +
Sbjct: 121 TTVQEAADMIEDLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. NCBI nr
Match: KAG7030278.1 (Acyl carrier protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 128/139 (92.09%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASSFC+RSAAPQSRQIAA+SKL GSKRVSFSYQGRNN  SRRL SL+ISCAAKPE
Sbjct: 1   MASITASSFCVRSAAPQSRQIAAVSKLPGSKRVSFSYQGRNNFSSRRLWSLQISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLAL DDS VNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALADDSIVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAADMIEDLILKK +
Sbjct: 121 TTVQEAADMIEDLILKKGS 139

[Close]

BLAST of Lsi11G004850 vs. TAIR 10
Match: AT4G25050.1 (acyl carrier protein 4 )

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MAS++ +S   +  AP +     + K S S+ V+F   GR    ++ L+ L+ISCAAK E
Sbjct: 1   MASLSTTSLSFK--APSTTISQVLRKASSSQSVTF---GRFTSSTKSLR-LQISCAAKAE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TV+KVS IVK+QLAL  D  +  ESKFS LGADSLDTVEIVM LEE+F ISVEE  AQ+I
Sbjct: 61  TVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TT+QEAAD+IEDL+ KK A
Sbjct: 121 TTIQEAADLIEDLVQKKPA 133

[Close]

BLAST of Lsi11G004850 vs. TAIR 10
Match: AT4G25050.2 (acyl carrier protein 4 )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 79/151 (52.32%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MAS++ +S   +  AP +     + K S S+ V+F   GR    ++ L+ L+ISCAAK E
Sbjct: 1   MASLSTTSLSFK--APSTTISQVLRKASSSQSVTF---GRFTSSTKSLR-LQISCAAKAE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDT------------VEIVMGLEEEF 120
           TV+KVS IVK+QLAL  D  +  ESKFS LGADSLDT            VEIVM LEE+F
Sbjct: 61  TVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEEKF 120

Query: 121 GISVEEESAQSITTVQEAADMIEDLILKKSA 140
            ISVEE  AQ+ITT+QEAAD+IEDL+ KK A
Sbjct: 121 NISVEESDAQNITTIQEAADLIEDLVQKKPA 145

[Close]

BLAST of Lsi11G004850 vs. TAIR 10
Match: AT1G54580.1 (acyl carrier protein 2 )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAA--ISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAK 60
           MASI AS+     A P+   IAA  +   S  +R S S+  R  L +R    L +SCAAK
Sbjct: 1   MASIAASASISLQARPRQLAIAASQVKSFSNGRRSSLSFNLR-QLPTR----LTVSCAAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE AQ
Sbjct: 61  PETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQ 120

Query: 121 SITTVQEAADMIEDLILKKS 139
           SI TV++AA +IE+L+ +K+
Sbjct: 121 SIATVEQAAALIEELLFEKA 135

[Close]

BLAST of Lsi11G004850 vs. TAIR 10
Match: AT1G54630.1 (acyl carrier protein 3 )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRV-SFSYQGRNNLYSRRLQ---SLRISCA 60
           MASI  S+     A P+   I       G+K+V SFSY  R+NL     Q    L + CA
Sbjct: 1   MASIATSASTSLQARPRQLVI-------GAKQVKSFSYGSRSNLSFNLRQLPTRLTVYCA 60

Query: 61  AKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE 
Sbjct: 61  AKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEK 120

Query: 121 AQSITTVQEAADMIEDLILKKS 139
           AQSI TV++AA +IE+L+L+K+
Sbjct: 121 AQSIATVEQAAALIEELLLEKA 135

[Close]

BLAST of Lsi11G004850 vs. TAIR 10
Match: AT5G27200.1 (acyl carrier protein 5 )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 6   ASSFCLRSAAPQSRQIAAISKLSGSKRVS-FSYQGRNNL--YSRRLQSLR--ISCAAKPE 65
           A+SFC  S + Q+   A  ++   +K+ + F+ +  NNL    RRL   R  +SCA K E
Sbjct: 2   ATSFC-SSISMQAPFSATTTRFCLNKQATIFNNEKTNNLSFSLRRLMPARLAVSCAVKQE 61

Query: 66  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 125
           TVEKVS IVKKQL+L DD  V   +KF+ LGADSLDTVEIVMGLEEEFGI++ EE A+ I
Sbjct: 62  TVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERAKEI 121

Query: 126 TTVQEAADMIEDLILKKSA 140
            TVQ+AA++IE+L+ +K+A
Sbjct: 122 ATVQQAAELIEELVQEKTA 139

The following BLAST results are available for this feature:

BLAST of Lsi11G004850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93092	1.8e-32	62.86	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 S...	[more]
P52412	6.7e-32	65.41	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=...	[more]
P52414	4.4e-31	63.77	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 ...	[more]
P52411	6.3e-30	63.31	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=...	[more]
P52413	9.1e-29	58.27	Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.3 PE=...	[more]

BLAST of Lsi11G004850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2R0	9.7e-58	92.81	Acyl carrier protein OS=Cucurbita moschata OX=3662 GN=LOC111450263 PE=3 SV=1	[more]
A0A0A0LG91	6.9e-56	91.37	Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_2G013290 PE=3 SV=1	[more]
A0A6J1KDG5	2.0e-55	89.93	Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111493903 PE=3 SV=1	[more]
A0A6J1HQL1	3.4e-55	89.13	Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111465717 PE=3 SV=1	[more]
A0A5A7V8V9	1.0e-54	89.93	Acyl carrier protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329...	[more]

BLAST of Lsi11G004850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889182.1	2.1e-59	96.40	acyl carrier protein 1, chloroplastic [Benincasa hispida]	[more]
XP_022946064.1	2.0e-57	92.81	acyl carrier protein 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6599280.1	7.6e-57	92.09	Acyl carrier protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023546824.1	1.3e-56	92.81	acyl carrier protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7030278.1	1.7e-56	92.09	Acyl carrier protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Lsi11G004850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25050.1	2.7e-28	56.83	acyl carrier protein 4	[more]
AT4G25050.2	1.3e-25	52.32	acyl carrier protein 4	[more]
AT1G54580.1	2.2e-25	51.43	acyl carrier protein 2	[more]
AT1G54630.1	2.2e-25	51.41	acyl carrier protein 3	[more]
AT5G27200.1	2.8e-25	53.24	acyl carrier protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 62..116 e-value: 0.0062 score: 18.8
IPR003231	Acyl carrier protein (ACP)	TIGRFAM	TIGR00517	TIGR00517	coord: 60..132 e-value: 1.0E-23 score: 81.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 60..134 score: 16.92687
IPR036736	ACP-like superfamily	GENE3D	1.10.1200.10		coord: 57..137 e-value: 9.8E-25 score: 88.5
IPR036736	ACP-like superfamily	SUPERFAMILY	47336	ACP-like	coord: 59..134
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 64..130 e-value: 1.3E-10 score: 41.5
IPR009081	Phosphopantetheine binding ACP domain	PROSITE	PS50075	CARRIER	coord: 59..134 score: 21.689711
None	No IPR available	PANTHER	PTHR46153:SF7	ACYL CARRIER PROTEIN	coord: 1..138
IPR044813	Acyl carrier protein, chloroplastic	PANTHER	PTHR46153	ACYL CARRIER PROTEIN	coord: 1..138
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 89..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004850.1	Lsi11G004850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000036	acyl carrier activity
molecular_function	GO:0031177	phosphopantetheine binding