Lsi11G003470 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G003470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Location	chr11: 3653245 .. 3657365 (+)
RNA-Seq Expression	Lsi11G003470
Synteny	Lsi11G003470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGATTTTTACTTTTTGAATAGACTTTTTGGAATTAGCTTGTATTTTGTGTTTTTCTATAATCTGTCGTTGTTTTATTTATTATTTATTATAATTATTTCGGGTAGCAGAACTGGGCTGGTTCAAGAAATCCCCCAACCCAACCCAACAGCCCATGGAAGGATTTTCCTTTACTATGCATTGAGGTGATGTTCTTTTTCTAACTCACAAAATACATAGAAAGTTGTGGATGCAATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGCTGATCAATGAATTTGCTGAGGTAGCTCTGAAGTTATCCTGTTTGTGCTAACTTACATATTGAAAAGATTTGTTAGTTTTTGAATTTTTAACCCTTGATGATGTTTGGTGGTTTACAGTGTGGATTTACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCTTCCAACTTGGCGTTCTTTATGCAATCAATCTATGCCCAATCAATTAGTAGGCTCTCCTATTATAAATTTGGTCATTTTTGCATTAATTTCTTGGCAATTTGATATTTCTTCTGAATTATGATGAACAAATCTGGTGCTAACTTCTTGTTTGTGGAATTAAGAAGAATTTTATTACTTTTTACAGGTCATATGCTCAGTACTGCTTCTTTGTCACACAGACTGGGTGGCCTTTTTTGCCTCTACTGTCTTTATGAGACACAACCCTTTAAGCCTCCTTACAAAATCTACCTGTCTATTGGTATGATTTTTCAAAGTCTTTAATATAAATGCATTTTATTTCTTTAATAATCATCTGATAGATATGTAAGTTTTGTCTAATTTGTTTGAGTCGACGTCTCTTCATGTCATCTCTACTTGTTCTTCTTTGGTTATTTTACTATGTTTCCACTTCATAGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAATGATGTAAAAGTGGTATCTTCTGTGGTGAAACAAATGTTAGAAAAGAACATGTTCCTCTTTGGTTCTGTAGACATGAATGAGAGCGCTGCTTTGGAAACAGTGAATCAACTAACGGAATTGCAAAATGCCCGCATTCAAGTAGCCTATAATAAGTATGTTGGAGAAACATTGGTTGCTCTTTTTATTCTAGATATATCCTGTCTTTGTCATGATATTTTTATAGCATCCTTAATTTTTATCTTTGATGACTAGGTTGTTTGATGATACCCCGATAGAAAACTATATCCATATGGACATGGTAAGTGAAAAGTACAAAAACTTATATTTGAATACCTTTTTAACTTGCATTATGAACTCTTGAAACTTTGTACTGAAAAGAGTTCCATGTTATTATTAGCTGTTTATCTAACTATTCTTTGAATTTTTTTTTATTCTTGAACAGGGGATGGAAGTTGGTTCGAATATATTAAAAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGGTAACTTCTTTCCTTCCAACGTGTTGTCTTTGTTATCCATTTGTGAGTGATCATATTTGATCTTTCTATTCTCGGTTATGGTCTTTGATGTAGATACTGTTTCTCTGACTAGTTTCACCCACTTGTTTCTCTGCCTTTTGTGTCTTGGCACCTGATTTATTTCTAAAGAAGCAAGTGAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAGATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGACTGGAACGTTCAAAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGCTTGTTCCAGTCGAGGCAGAGCAACAGTTACTAGAAGATTATGCCAATGAAAATTTTGATAAGGAACTTGAAAGAATGCTAACCGATGTTTAACAAGGTATAGAGTTCTCTCTAATTCTAACTATAGCAGATGGGTTTTTGAATTGCCTAATCACCTAGTTATGACATTTAGCTTGAAGTCACAAGAGATTGAAAAGAGAGATGAAACCCTCAACCACTCATCCTTAACTCGCGATTAAGCTGTTTTCAATGCAGAAGGCCAAAGTTAAGCCTCCTAAGCCACAGTGAATGAAGCACCATATGAATTACATCAAATGGCTTGGCAGGCCTATTTATCTTGAAATGCCTTCTTACTTTGATCACTCCTTTGTACATCTTCAAATACTTCTCTTCTGAGACAGCGTTCAAAATTGTTTTTATTTCTGGTATTCTTTGAACAGGTATCTGCACTGAAAACCGACTCCAATCTAGAACATCGCTGAATGGTAATGAATAATTATCAGAAATGATAACTGGAACACAACCACCATAGATGGCTTCCACCACCCTCGGGCTTGCCACTTCAAAGCCACTAGGGCAGAGACAAAACTTGCTTTCTCCAATCAATTTGGTGTAATTTTGGTTCTTAGGAAGATATTCATGAACTTGAACTTCTTTGTCCTTTTCCTTCCAATGTTGGATCAAGATCTTCCTGATGTATCCATGAGCTCCTCCTGCGAAGAAAGCTAGAATTGGGCGGTTTTCTGGTGGCTGGCCTAAGTCTGGTGGCCCTAACGTTCCAGGGTGGATGGTGATTTCTGGGAGTGGAATGTCTATGTTGGGACGGAAGCCTTCTGTGACGTTTGCATTGCATACTACCCTGATGAAGTTTTTGAACAGCTGGGGGTTGGCATCTGAGATTTCTGGTGCCTTGAAATCGCCATTAGAAGTTTAAAGGAGGAAGCATTAGAAAAAATAAAAAATAAACGAAGACTTCATAACAAGTAGAATCTTACCCAATCATGGCATGAAACCATAAAATGATCGGCACCATTGCTTCGGTTCCAATATGGATACCTGTTGGCAACAACTTGAATATAATCAGTTGTCACACGGTGCATCCGATCACGGCTGTAGTCAGTGGGAGAAGTGATTGGCCTGTAAACGAAATGAATGATGTTGGTGATGCTCAAAGGAAGAAGAAATACATGAGCTTGATCAGGATGGCTGGCTCTAAAGGGGCTCTTGCTGCAATCTAACTCATCTATAAATTGGCCTTCAATGGCATATATGCTATTCAATGGACCGTCATGGACCAGAGGCTGTTCTCCTTCTCTGTAACTCCACACCTTGAACCTCTTCACCATTTCTATGTGGCTTCTGCGTAACATTTTGGATATATACTGTAAGCATATAGGTGGATAATGATTTTACTTTTTGTTTCTAAATAAGATAGTTCTGTAATGATTTGTTTGTTTCTTTCTATAGAAGATGTTCGAAATTCTAGCCAAGTCTTCGAAGTTCTAACCAATTATTTATTATTAGTAATAAACAATCCCAACACTTTAAATTGTTTATCAAATAACTCAAATGTTATATCATATATTCATATGTTTGTTCCTTTTTCAGTAGGTAAACTCAACTGATGAAAAGCATAAGCATTTCTGTAAATGGAGCCTCTGGGAATGTAAGTTTCTTTCTTCTCTGATGTGAAGTTTTTCCACAGAACTGCATTTCGGATTGACGCTCGAGCTTCAGCCAAACTTGCTTCAATCATCTTCAAGCTCGTCGTCTTTTTCTTCTGCTCCAGAAACCCCAAAATGAAAACCAGAAAACACACAAGAAAATTTGACAACAGCAAAAACACTAGAGAAAAAAGGGGAGAGCCTTTTCTTTCATTCCTACTTTGATGAATATAGCTTTCATGGGCTTGTTGCCTTCTCTCATGGGGGTTATGGGAAAGATAGAAGAGGCTAGTGGAAAAGCTTCAGTTGCTTGTGACAGGTCCAACAATGGTGGAATAGAAAGAAATGAAAGGAAACAAAGCAGAAGAAGAAGACTAGCTGGAAGTAGCAAGCAAGGGGGATGGCAGCTGAAGCTTGCCATGGCTGAACTCTTCATTTCAAGCTCTCTCTCTAATCTTTTTCCTTTTTAAGTGCCCAAGGAAAGAGAAACTGAAGAGATTGCCAGTAGAAAAAAGTTTGAATTTCTTCCTTCTTCCTCCAAAATCGATGTAATCGAATCCAAAAGAGTGATTAATTAATGCATTTTGTTGAATAATATGGTGGAAACAGCTTGGAAAAAGTGATGCTTATAGACACCGGTACCTTAAATTAA

mRNA sequence

ATGGTTAACTGGGCTGGTTCAAGAAATCCCCCAACCCAACCCAACAGCCCATGGAAGGATTTTCCTTTACTATGCATTGAGAAAGTTGTGGATGCAATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGCTGATCAATGAATTTGCTGAGTGTGGATTTACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCTTCCAACTTGGCGTTCTTTATGCAATCAATCTATGCCCAATCAATTAGTCATATGCTCAGTACTGCTTCTTTGTCACACAGACTGGGTGGCCTTTTTTGCCTCTACTGTCTTTATGAGACACAACCCTTTAAGCCTCCTTACAAAATCTACCTGTCTATTGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAATGATGTAAAAGTGGTATCTTCTGTGGTGAAACAAATGTTAGAAAAGAACATGTTCCTCTTTGGTTCTGTAGACATGAATGAGAGCGCTGCTTTGGAAACAGTGAATCAACTAACGGAATTGCAAAATGCCCGCATTCAAGTAGCCTATAATAAGTTGTTTGATGATACCCCGATAGAAAACTATATCCATATGGACATGGGGATGGAAGTTGGTTCGAATATATTAAAAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGAAGCAAGTGAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAGATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGACTGGAACGTTCAAAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGCTTGTTCCAGTCGAGGCAGAGCAACAGTTACTAGAAGATTATGCCAATGAAAATTTTGATAAGGAACTTGAAAGAATGCTAACCGATGTTTAACAAGGTATCTGCACTGAAAACCGACTCCAATCTAGAACATCGCTGAATGGTAATGAATAATTATCAGAAATGATAACTGGAACACAACCACCATAGATGGCTTCCACCACCCTCGGGCTTGCCACTTCAAAGCCACTAGGGCAGAGACAAAACTTGCTTTCTCCAATCAATTTGGTGTAATTTTGGTTCTTAGGAAGATATTCATGAACTTGAACTTCTTTGTCCTTTTCCTTCCAATGTTGGATCAAGATCTTCCTGATGTATCCATGAGCTCCTCCTGCGAAGAAAGCTAGAATTGGGCGGTTTTCTGGTGGCTGGCCTAAGTCTGGTGGCCCTAACGTTCCAGGGTGGATGGTGATTTCTGGGAGTGGAATGTCTATGTTGGGACGGAAGCCTTCTGTGACGTTTGCATTGCATACTACCCTGATGAAGTTTTTGAACAGCTGGGGGTTGGCATCTGAGATTTCTGGTGCCTTGAAATCGCCATTAGAAGTTTAAAGGAGGAAGCATTAGAAAAAATAAAAAATAAACGAAGACTTCATAACAAGTAGAATCTTACCCAATCATGGCATGAAACCATAAAATGATCGGCACCATTGCTTCGGTTCCAATATGGATACCTGTTGGCAACAACTTGAATATAATCAGTTGTCACACGGTGCATCCGATCACGGCTGTAGTCAGTGGGAGAAGTGATTGGCCTGTAAACGAAATGAATGATGTTGGTGATGCTCAAAGGAAGAAGAAATACATGAGCTTGATCAGGATGGCTGGCTCTAAAGGGGCTCTTGCTGCAATCTAACTCATCTATAAATTGGCCTTCAATGGCATATATGCTATTCAATGGACCGTCATGGACCAGAGGCTGTTCTCCTTCTCTGTAACTCCACACCTTGAACCTCTTCACCATTTCTATGTGGCTTCTGCGTAACATTTTGGATATATACTTAGGTAAACTCAACTGATGAAAAGCATAAGCATTTCTGTAAATGGAGCCTCTGGGAATGTAAGTTTCTTTCTTCTCTGATGTGAAGTTTTTCCACAGAACTGCATTTCGGATTGACGCTCGAGCTTCAGCCAAACTTGCTTCAATCATCTTCAAGCTCGTCGTCTTTTTCTTCTGCTCCAGAAACCCCAAAATGAAAACCAGAAAACACACAAGAAAATTTGACAACAGCAAAAACACTAGAGAAAAAAGGGGAGAGCCTTTTCTTTCATTCCTACTTTGATGAATATAGCTTTCATGGGCTTGTTGCCTTCTCTCATGGGGGTTATGGGAAAGATAGAAGAGGCTAGTGGAAAAGCTTCAGTTGCTTGTGACAGGTCCAACAATGGTGGAATAGAAAGAAATGAAAGGAAACAAAGCAGAAGAAGAAGACTAGCTGGAAGTAGCAAGCAAGGGGGATGGCAGCTGAAGCTTGCCATGGCTGAACTCTTCATTTCAAGCTCTCTCTCTAATCTTTTTCCTTTTTAAGTGCCCAAGGAAAGAGAAACTGAAGAGATTGCCAGTAGAAAAAAGTTTGAATTTCTTCCTTCTTCCTCCAAAATCGATGTAATCGAATCCAAAAGAGTGATTAATTAATGCATTTTGTTGAATAATATGGTGGAAACAGCTTGGAAAAAGTGATGCTTATAGACACCGGTACCTTAAATTAA

Coding sequence (CDS)

ATGGTTAACTGGGCTGGTTCAAGAAATCCCCCAACCCAACCCAACAGCCCATGGAAGGATTTTCCTTTACTATGCATTGAGAAAGTTGTGGATGCAATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGCTGATCAATGAATTTGCTGAGTGTGGATTTACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTCTTCCAACTTGGCGTTCTTTATGCAATCAATCTATGCCCAATCAATTAGTCATATGCTCAGTACTGCTTCTTTGTCACACAGACTGGGTGGCCTTTTTTGCCTCTACTGTCTTTATGAGACACAACCCTTTAAGCCTCCTTACAAAATCTACCTGTCTATTGGAGAGTTGAAGAAACTGAAGGAACTTGTTGTTGATGCAAAAGAAAATGATGTAAAAGTGGTATCTTCTGTGGTGAAACAAATGTTAGAAAAGAACATGTTCCTCTTTGGTTCTGTAGACATGAATGAGAGCGCTGCTTTGGAAACAGTGAATCAACTAACGGAATTGCAAAATGCCCGCATTCAAGTAGCCTATAATAAGTTGTTTGATGATACCCCGATAGAAAACTATATCCATATGGACATGGGGATGGAAGTTGGTTCGAATATATTAAAAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGAAGCAAGTGAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAGATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGACTGGAACGTTCAAAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGCTTGTTCCAGTCGAGGCAGAGCAACAGTTACTAGAAGATTATGCCAATGAAAATTTTGATAAGGAACTTGAAAGAATGCTAACCGATGTTTAA

Protein sequence

MVNWAGSRNPPTQPNSPWKDFPLLCIEKVVDAMDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQSISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVVSSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMDMGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNVQRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV

Homology

[Close]

BLAST of Lsi11G003470 vs. ExPASy TrEMBL
Match: A0A0A0LL25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008040 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 9.0e-144
Identity = 263/284 (92.61%), Postives = 277/284 (97.54%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHMLSTASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKEN+VKVV
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAY KLF+DTPI NYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSNIL KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQ VPVEA+QQLLED+A+ NFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. ExPASy TrEMBL
Match: A0A5A7VCA1 (Putative mediator of RNA polymerase II transcription subunit 26 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00640 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 4.5e-143
Identity = 260/284 (91.55%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHM S ASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKEN+VKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAYNKLF+DTPIENYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+L KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQL+PVEA+QQLLED+ + NFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVNFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. ExPASy TrEMBL
Match: A0A1S3C4E1 (uncharacterized protein LOC103496883 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496883 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.2e-142
Identity = 258/284 (90.85%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHM S ASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELV+DAKEN+VKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAYNKLF+DTPIENYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+L KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQL+PVEA+QQLLED+ + +FDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. ExPASy TrEMBL
Match: A0A1S3C4X9 (uncharacterized protein LOC103496883 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496883 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.6e-140
Identity = 257/284 (90.49%), Postives = 275/284 (96.83%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHM S ASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELV+DAKEN+VKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAYNKLF+DTPIENYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+L KMSTDYSEAKKLALY AS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALY-ASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQL+PVEA+QQLLED+ + +FDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 283

[Close]

BLAST of Lsi11G003470 vs. ExPASy TrEMBL
Match: A0A6J1CN36 (uncharacterized protein LOC111013003 OS=Momordica charantia OX=3673 GN=LOC111013003 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 8.8e-131
Identity = 243/286 (84.97%), Postives = 266/286 (93.01%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPFRLDIDELI E+AE G+TSF DMK VW GRKFTYIFEAAP SNLAFFMQS+YAQS
Sbjct: 1   MNLSPFRLDIDELITEYAEGGYTSFADMKNVWTGRKFTYIFEAAP-SNLAFFMQSMYAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+ TASLS RLGG +CLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKE +VKV 
Sbjct: 61  IGHMVGTASLSRRLGGFYCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKEKNVKVA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S+V K+MLEKNMFLFGSVDMNES+ALETVNQLTELQNARIQVAYNKLF DTPIE+YIHMD
Sbjct: 121 SAVAKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYNKLFSDTPIEDYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVG N+LKKMSTDYSEAKKLALYEAS+I+DVQDIKHI+ED+RLIGDTVE+IAE+WNV
Sbjct: 181 LGMEVGLNVLKKMSTDYSEAKKLALYEASDILDVQDIKHISEDDRLIGDTVEQIAENWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEA--EQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLD+QLVPVEA  E QLL  +A+ENFDKELERMLTD+
Sbjct: 241 QRGVFYEQTGLDRQLVPVEAHKENQLLVHHADENFDKELERMLTDI 285

[Close]

BLAST of Lsi11G003470 vs. NCBI nr
Match: KAE8651536.1 (hypothetical protein Csa_019424 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 6.8e-146
Identity = 267/290 (92.07%), Postives = 282/290 (97.24%), Query Frame = 0


Query: 27  EKVVDAMDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQ 86
           +K VDAMDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPS+NLAFFMQ
Sbjct: 426 QKFVDAMDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQ 485

Query: 87  SIYAQSISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKE 146
           SI+AQSISHMLSTASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKE
Sbjct: 486 SIFAQSISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKE 545

Query: 147 NDVKVVSSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIE 206
           N+VKVVS VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAY KLF+DTPI 
Sbjct: 546 NNVKVVSFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIG 605

Query: 207 NYIHMDMGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKI 266
           NYIHMD+GMEVGSNIL KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKI
Sbjct: 606 NYIHMDLGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKI 665

Query: 267 AEDWNVQRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           AEDWNVQRGVFYEQTGLDQQ VPVEA+QQLLED+A+ NFDKELERMLTDV
Sbjct: 666 AEDWNVQRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 715

[Close]

BLAST of Lsi11G003470 vs. NCBI nr
Match: XP_031737111.1 (uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737112.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737113.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737114.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737115.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737116.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737117.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737118.1 uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus])

HSP 1 Score: 519.6 bits (1337), Expect = 1.9e-143
Identity = 263/284 (92.61%), Postives = 277/284 (97.54%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHMLSTASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKEN+VKVV
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAY KLF+DTPI NYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSNIL KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQ VPVEA+QQLLED+A+ NFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. NCBI nr
Match: KAA0063525.1 (putative mediator of RNA polymerase II transcription subunit 26 isoform X1 [Cucumis melo var. makuwa] >TYJ97852.1 putative mediator of RNA polymerase II transcription subunit 26 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 517.3 bits (1331), Expect = 9.2e-143
Identity = 260/284 (91.55%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHM S ASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELVVDAKEN+VKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAYNKLF+DTPIENYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+L KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQL+PVEA+QQLLED+ + NFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVNFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. NCBI nr
Match: XP_038890120.1 (uncharacterized protein LOC120079795 isoform X1 [Benincasa hispida] >XP_038890121.1 uncharacterized protein LOC120079795 isoform X1 [Benincasa hispida] >XP_038890122.1 uncharacterized protein LOC120079795 isoform X1 [Benincasa hispida] >XP_038890125.1 uncharacterized protein LOC120079795 isoform X1 [Benincasa hispida])

HSP 1 Score: 516.2 bits (1328), Expect = 2.1e-142
Identity = 261/284 (91.90%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDL+PFRLDIDELINEFAE GFTSFVDMKKVW+GRKFTYIFEAAPS+NLAFFMQSIYAQS
Sbjct: 1   MDLAPFRLDIDELINEFAESGFTSFVDMKKVWVGRKFTYIFEAAPSTNLAFFMQSIYAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHMLSTASLSHRLGGL+CLYCLYETQPFKP YKIYLSIGELKKLKELVVDAKEN+VKV 
Sbjct: 61  ISHMLSTASLSHRLGGLYCLYCLYETQPFKPSYKIYLSIGELKKLKELVVDAKENNVKVA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           SSVVK+MLEKNMFLFGSVDM ESAALETVNQLTELQNARIQVAYNKLF+DTPIENYIHMD
Sbjct: 121 SSVVKRMLEKNMFLFGSVDMKESAALETVNQLTELQNARIQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+LKKMSTDYSEAKKLALYEASEIVDV DIKHIAEDE+LIGDTVEKIAEDWN+
Sbjct: 181 LGMEVGSNVLKKMSTDYSEAKKLALYEASEIVDVHDIKHIAEDEKLIGDTVEKIAEDWNI 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRG F+EQTGLDQQLVPVEAEQ LLE +A+ENFD+ELERMLTDV
Sbjct: 241 QRGFFHEQTGLDQQLVPVEAEQLLLEGHADENFDQELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. NCBI nr
Match: XP_008457139.1 (PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo])

HSP 1 Score: 515.0 bits (1325), Expect = 4.6e-142
Identity = 258/284 (90.85%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPS+NLAFFMQSI+AQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           ISHM S ASL HRLGGL+CLYCLYETQPF+PPYKIYLSIGELKKLKELV+DAKEN+VKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           S VVK+MLEKNMFLFGSVDMNESAALETVNQLTELQNAR+QVAYNKLF+DTPIENYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           +GMEVGSN+L KMSTDYSEAKKLALYEAS+IVDVQDIKHIAEDE+LIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 273 QRGVFYEQTGLDQQLVPVEAEQQLLEDYANENFDKELERMLTDV 317
           QRGVFYEQTGLDQQL+PVEA+QQLLED+ + +FDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 284

[Close]

BLAST of Lsi11G003470 vs. TAIR 10
Match: AT3G53270.1 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-81
Identity = 153/288 (53.12%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P+SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+S  S S RLGGL+CLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           ++V K+ML++NM +FG+VD  E++A +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           MG EV  N L KMS +Y+EAKK A+  A EI+++ DIKHI+E++ L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 273 QRGVFYEQTGLD------QQLVPVEAEQQLLEDYANENFDKELERMLT 315
           QR  FYEQT LD      +QL  VE ++       ++ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

[Close]

BLAST of Lsi11G003470 vs. TAIR 10
Match: AT3G53270.4 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-81
Identity = 153/288 (53.12%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P+SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+S  S S RLGGL+CLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           ++V K+ML++NM +FG+VD  E++A +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           MG EV  N L KMS +Y+EAKK A+  A EI+++ DIKHI+E++ L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 273 QRGVFYEQTGLD------QQLVPVEAEQQLLEDYANENFDKELERMLT 315
           QR  FYEQT LD      +QL  VE ++       ++ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

[Close]

BLAST of Lsi11G003470 vs. TAIR 10
Match: AT3G53270.3 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-81
Identity = 153/288 (53.12%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P+SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+S  S S RLGGL+CLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           ++V K+ML++NM +FG+VD  E++A +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           MG EV  N L KMS +Y+EAKK A+  A EI+++ DIKHI+E++ L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 273 QRGVFYEQTGLD------QQLVPVEAEQQLLEDYANENFDKELERMLT 315
           QR  FYEQT LD      +QL  VE ++       ++ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

[Close]

BLAST of Lsi11G003470 vs. TAIR 10
Match: AT3G53270.2 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-81
Identity = 153/288 (53.12%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P+SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+S  S S RLGGL+CLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           ++V K+ML++NM +FG+VD  E++A +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           MG EV  N L KMS +Y+EAKK A+  A EI+++ DIKHI+E++ L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 273 QRGVFYEQTGLD------QQLVPVEAEQQLLEDYANENFDKELERMLT 315
           QR  FYEQT LD      +QL  VE ++       ++ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

[Close]

BLAST of Lsi11G003470 vs. TAIR 10
Match: AT3G53270.5 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-81
Identity = 153/288 (53.12%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 33  MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSSNLAFFMQSIYAQS 92
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P+SNLAFFMQS+Y  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 93  ISHMLSTASLSHRLGGLFCLYCLYETQPFKPPYKIYLSIGELKKLKELVVDAKENDVKVV 152
           I HM+S  S S RLGGL+CLYCL+E QPFKP ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 153 SSVVKQMLEKNMFLFGSVDMNESAALETVNQLTELQNARIQVAYNKLFDDTPIENYIHMD 212
           ++V K+ML++NM +FG+VD  E++A +T++QLTELQNAR++ AY KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 213 MGMEVGSNILKKMSTDYSEAKKLALYEASEIVDVQDIKHIAEDERLIGDTVEKIAEDWNV 272
           MG EV  N L KMS +Y+EAKK A+  A EI+++ DIKHI+E++ L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 273 QRGVFYEQTGLD------QQLVPVEAEQQLLEDYANENFDKELERMLT 315
           QR  FYEQT LD      +QL  VE ++       ++ FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

The following BLAST results are available for this feature:

BLAST of Lsi11G003470 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G003470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL25	9.0e-144	92.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008040 PE=4 SV=1	[more]
A0A5A7VCA1	4.5e-143	91.55	Putative mediator of RNA polymerase II transcription subunit 26 isoform X1 OS=Cu...	[more]
A0A1S3C4E1	2.2e-142	90.85	uncharacterized protein LOC103496883 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C4X9	1.6e-140	90.49	uncharacterized protein LOC103496883 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CN36	8.8e-131	84.97	uncharacterized protein LOC111013003 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lsi11G003470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651536.1	6.8e-146	92.07	hypothetical protein Csa_019424 [Cucumis sativus]	[more]
XP_031737111.1	1.9e-143	92.61	uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus] >XP_031737112....	[more]
KAA0063525.1	9.2e-143	91.55	putative mediator of RNA polymerase II transcription subunit 26 isoform X1 [Cucu...	[more]
XP_038890120.1	2.1e-142	91.90	uncharacterized protein LOC120079795 isoform X1 [Benincasa hispida] >XP_03889012...	[more]
XP_008457139.1	4.6e-142	90.85	PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo]	[more]

BLAST of Lsi11G003470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53270.1	1.7e-81	53.13	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.4	1.7e-81	53.13	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.3	1.7e-81	53.13	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.2	1.7e-81	53.13	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]
AT3G53270.5	1.7e-81	53.13	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PFAM	PF09808	SNAPc_SNAP43	coord: 38..233 e-value: 1.3E-48 score: 165.6
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PANTHER	PTHR15131	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	coord: 35..287
None	No IPR available	PANTHER	PTHR15131:SF3	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 1	coord: 35..287

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003470.1	Lsi11G003470.1	mRNA