Lsi11G003350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G003350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Actin-related protein 6
Location	chr11: 3463102 .. 3465191 (-)
RNA-Seq Expression	Lsi11G003350
Synteny	Lsi11G003350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCTATCATGCTATGTGTATTTCCATCCCATTTGGACTTAGACAACCAGTTGAAACAGGAATGAACCAGGCCGGCTTAGCAGAGTGCATTGTTAGAGCTGTTAATTCTTGCCATCCTCATCTGCACCCCGTGCTCTACGAGAGGTATTTTTGTTTGCTATGTGTTGGTAGACTCATAAACATGCATATATTTTTCACTTCGTTTTAACCTGATACTAACTATTATACTTTCAAGCAGTATTGTTTTGACTGGTGGAAGCACTTTATTTCACAATTTTGCTGAGAGATTGTGAGTCCTTCATTTCTTTGATTGGACGATTTGTATGTTCTTAAATTCAAATAAATCGACAATTTGACATTCAATTTCAATTTCAATTTATCATCTTAGAGAGAAGGAGCTCCGTCCTCTTGTCCCAGATGAGTGTCAAGTGAAGATAACAACTCAAGAAGAGTAAATTATATGCCCCAGATCATAGTTTTTTTTAGTTTTTATCCGTTCAATATAGCAGCCTGACACTTAATTGTAAACATTCGTGCTTTTGTTGCAGTCCCATTTTAGGGGCGTGGAGAGGGGGATCACTACTAGCATCTAGTCCTAGTTTTGAAGCAATGTGTGTTACTAAGGCCGAATACGAGGAACTTGGATCTGCTCGGTGTCGGAAGAGATTTTTACATTGAGTGCTTGAAAGCATAAAGGTTACTACTAACTTTGACTGAACTAGACCAGTTATTTATAATCAATTATACTACTGGGTGCCGCTATTCTGTTTCTAGTTTTAAACCATAAAATCATTTGTATCTCAAATGATTCTAGAGCAATAAGTTTTGTGTAGATTTTCTCTAAGTTTCTGTGCAAAAACACGATCGTGCACAAGGGGAGGAAGAACTAACTGATCACCCCCTTGATGAAGGAAGGTTCAAGCAAGCTTCAGTGGCGGCTCATTCAAGCATATAAAAGGTAAAACGAACTTATCTTCCTCATTAGGGAAATCACTGTCAAGTTCTTAATGTTTTGGCAACCTTGAGGATCTTTCAGCTTGAGGATTCAGCTGAGGGGACGGATCTAGCGAAATATGGACTTCAAGTGATGCTTTAATGTAGTTTGTGAAAATAATTTGAAAAAGAAAAAATAAGGGTAGTTTATAAATAAATGACTATCCAAAATCTATATTAGATTATAAATAAATCATCCTTGAAATAAATAGTTGTTTATCCAAACGCATCTTTACAAAAGACAATATATCATATATTTACAATTATTTCAAAGCCCTAATATTTCCAGCAAGATTTTAACTATTGATGTTGATGGAAATATCACAATCCCAATTTTATGAAGATGTCGTTGATATTTTATTGATGTTGATGCTGACATCTTTATAGCATTATTAAAAATATCGATTCATCGCTTATATTGATTAAAGCCGAATCTCTTTGCTCATGGTAACATCCACACATTAATGATATATTCTATTCCATATATGTCAGTGAGCAGGCGTTTGTGGGTCAATTCTAAGCCATAGCAGGAGCCAGTAGGGACCAACTTTCTGCTGAAAAATTAAGTTTGTATATGAGGGAGGTAGATGCAAAATCTTCATTGGACTGATTGCAGAGGATTTACTTGAACGTCAATGTGAGCATAACTCAACAAGTTTAAACATATACTCTCAATCAAAAGGTAAGAGGTTCGAATTTTCACTTTTATATATTGAACTGGGAAGGAGAATGCAGGAAGAACTTGTATATTTTGATTCTTGCTTTGGATTTGATTTTGGTATTGTATTCCAAGATTTGAATATTGTCTGATTGCCTCTCACAGCAAAAGTTGTCAGTCAAAAAAGAGTTATTTGCTCTGTTTCTGTTGTCTACTGAATCTGTTTTGGTTGGAAGCTTGAAGATGTATAATTGCTTTGCTGGTATACATTTGGCATTCAATCTCTGAATGATGCAGTCTGTCTGTCACATTAATGCTGGGGTTGATCTTGACATCTTATTGTGCCTGTACTTAGGGAACATTTTGATTTTATTTTGTAAATTCACTCTCTGATTCTTTTTTAAAAGTTATTCTTATTGCCATTTGGCTACCCA

mRNA sequence

ATGCCTTTCTATCATGCTATGTGTATTTCCATCCCATTTGGACTTAGACAACCAGTTGAAACAGGAATGAACCAGGCCGGCTTAGCAGAGTGCATTGTTAGAGCTGTTAATTCTTGCCATCCTCATCTGCACCCCGTGCTCTACGAGAGTATTGTTTTGACTGGTGGAAGCACTTTATTTCACAATTTTGCTGAGAGATTAGAGAAGGAGCTCCGTCCTCTTGTCCCAGATGAGTGTCAAGTGAAGATAACAACTCAAGAAGATCCCATTTTAGGGGCGTGGAGAGGGGGATCACTACTAGCATCTAGTCCTAGTTTTGAAGCAATGTGTGTTACTAAGGCCGAATACGAGGAACTTGGATCTGCTCGGTGTCGGAAGAGATTTTTACATTGAGTGCTTGAAAGCATAAAGAGCAATAAGTTTTGTGTAGATTTTCTCTAAGTTTCTGTGCAAAAACACGATCGTGCACAAGGGGAGGAAGAACTAACTGATCACCCCCTTGATGAAGGAAGGTTCAAGCAAGCTTCAGTGGCGGCTCATTCAAGCATATAAAAGTGAGCAGGCGTTTGTGGGTCAATTCTAAGCCATAGCAGGAGCCAGTAGGGACCAACTTTCTGCTGAAAAATTAAGTTTGTATATGAGGGAGGTAGATGCAAAATCTTCATTGGACTGATTGCAGAGGATTTACTTGAACGTCAATGTGAGCATAACTCAACAAGTTTAAACATATACTCTCAATCAAAAGGTAAGAGGTTCGAATTTTCACTTTTATATATTGAACTGGGAAGGAGAATGCAGGAAGAACTTGTATATTTTGATTCTTGCTTTGGATTTGATTTTGGTATTGTATTCCAAGATTTGAATATTGTCTGATTGCCTCTCACAGCAAAAGTTGTCAGTCAAAAAAGAGTTATTTGCTCTGTTTCTGTTGTCTACTGAATCTGTTTTGGTTGGAAGCTTGAAGATGTATAATTGCTTTGCTGGTATACATTTGGCATTCAATCTCTGAATGATGCAGTCTGTCTGTCACATTAATGCTGGGGTTGATCTTGACATCTTATTGTGCCTGTACTTAGGGAACATTTTGATTTTATTTTGTAAATTCACTCTCTGATTCTTTTTTAAAAGTTATTCTTATTGCCATTTGGCTACCCA

Coding sequence (CDS)

ATGCCTTTCTATCATGCTATGTGTATTTCCATCCCATTTGGACTTAGACAACCAGTTGAAACAGGAATGAACCAGGCCGGCTTAGCAGAGTGCATTGTTAGAGCTGTTAATTCTTGCCATCCTCATCTGCACCCCGTGCTCTACGAGAGTATTGTTTTGACTGGTGGAAGCACTTTATTTCACAATTTTGCTGAGAGATTAGAGAAGGAGCTCCGTCCTCTTGTCCCAGATGAGTGTCAAGTGAAGATAACAACTCAAGAAGATCCCATTTTAGGGGCGTGGAGAGGGGGATCACTACTAGCATCTAGTCCTAGTTTTGAAGCAATGTGTGTTACTAAGGCCGAATACGAGGAACTTGGATCTGCTCGGTGTCGGAAGAGATTTTTACATTGA

Protein sequence

MPFYHAMCISIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH

Homology

[Close]

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot
Match: Q8LGE3 (Actin-related protein 6 OS=Arabidopsis thaliana OX=3702 GN=ARP6 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-50
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  L QP + GMNQAGLAECIVRA+NSCH +L PVLY+SI+LTGGSTLF    ERLE E
Sbjct: 302 VPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGE 361

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPD   VKITTQEDPILG WRGGSLLASSP FE+MCVTKAEYEELGSARCR+RF H
Sbjct: 362 LRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFFH 421

[Close]

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot
Match: A2WNB0 (Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-49
Identity = 88/120 (73.33%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  L  P++ GMNQAGLAECIVRA+ +CHPHL PVL+E I+LTGGSTLF  F ERLEKE
Sbjct: 310 VPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKE 369

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPD+ QVKI  QEDPILGAWRGGSLLA  P FE+MC+TK+EYEE+GS RCR+RF H
Sbjct: 370 LRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFFH 429

[Close]

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot
Match: Q5NBI2 (Actin-related protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARP6 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-49
Identity = 88/120 (73.33%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  L  P++ GMNQAGLAECIVRA+ +CHPHL PVL+E I+LTGGSTLF  F ERLEKE
Sbjct: 310 VPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKE 369

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPD+ QVKI  QEDPILGAWRGGSLLA  P FE+MC+TK+EYEE+GS RCR+RF H
Sbjct: 370 LRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFFH 429

[Close]

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot
Match: Q54KZ7 (Actin-related protein 6 OS=Dictyostelium discoideum OX=44689 GN=arpF PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-23
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 10  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEK 69
           ++P  L  P + GMNQAGLAE IV+++N  + +LH  LY +I+L GGSTLF    ERLE 
Sbjct: 371 TVPELLFNPSDIGMNQAGLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLEL 430

Query: 70  ELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRF 129
           ELR L P++  + I   +DPIL    GG  LA  P +    ++K +YEE G   C K+F
Sbjct: 431 ELRKLAPEQYNINIFQPQDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKF 489

[Close]

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot
Match: Q9GZN1 (Actin-related protein 6 OS=Homo sapiens OX=9606 GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 43/119 (36.13%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 10  SIPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEK 69
           ++P  L  P + G+ + G+ E IV ++ +    + P  +++IVLTGG++LF  F +R+  
Sbjct: 276 AVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYS 335

Query: 70  ELRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRF 129
           E+R L P +  V +   E+PI  AW GG L++ +  FE M VT+ +YEE G + C ++F
Sbjct: 336 EVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKF 394

[Close]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL
Match: A0A5D3BFL4 (Actin-related protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00760 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE 78
           VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE
Sbjct: 337 VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE 396

Query: 79  CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 131
           CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 397 CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 448

[Close]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL
Match: A0A1S4DYD3 (actin-related protein 6 OS=Cucumis melo OX=3656 GN=LOC103496716 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL
Match: A0A5A7V987 (Actin-related protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00420 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL
Match: A0A0A0LL11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007400 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.1e-58
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDPILG+WRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPILGSWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL
Match: A0A6J1CNA2 (actin-related protein 6 OS=Momordica charantia OX=3673 GN=LOC111013159 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDP+LG WRGGSLLASSPSFE MCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPVLGVWRGGSLLASSPSFETMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. NCBI nr
Match: TYJ97864.1 (actin-related protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE 78
           VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE
Sbjct: 337 VETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKELRPLVPDE 396

Query: 79  CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 131
           CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 397 CQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 448

[Close]

BLAST of Lsi11G003350 vs. NCBI nr
Match: XP_016900982.1 (PREDICTED: actin-related protein 6 [Cucumis melo] >XP_016900983.1 PREDICTED: actin-related protein 6 [Cucumis melo] >XP_016900985.1 PREDICTED: actin-related protein 6 [Cucumis melo] >KAA0063537.1 actin-related protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-58
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. NCBI nr
Match: XP_031736832.1 (actin-related protein 6 [Cucumis sativus] >KGN60696.1 hypothetical protein Csa_019454 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 8.4e-58
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDECQVKITTQEDPILG+WRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPLVPDECQVKITTQEDPILGSWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. NCBI nr
Match: XP_038890803.1 (LOW QUALITY PROTEIN: actin-related protein 6 [Benincasa hispida])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P + GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 282 VPEMIFHPADLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 341

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPDEC+VKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 342 LRPLVPDECRVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 401

[Close]

BLAST of Lsi11G003350 vs. NCBI nr
Match: XP_023545835.1 (actin-related protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  +  P++ GMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE
Sbjct: 326 VPEMIFHPIDLGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 385

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRP+VPDEC+VKITTQEDPILG WRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH
Sbjct: 386 LRPIVPDECKVKITTQEDPILGVWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 445

[Close]

BLAST of Lsi11G003350 vs. TAIR 10
Match: AT3G33520.1 (actin-related protein 6 )

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-51
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 11  IPFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKE 70
           +P  L QP + GMNQAGLAECIVRA+NSCH +L PVLY+SI+LTGGSTLF    ERLE E
Sbjct: 302 VPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGE 361

Query: 71  LRPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELGSARCRKRFLH 130
           LRPLVPD   VKITTQEDPILG WRGGSLLASSP FE+MCVTKAEYEELGSARCR+RF H
Sbjct: 362 LRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFFH 421

[Close]

BLAST of Lsi11G003350 vs. TAIR 10
Match: AT1G49240.1 (actin 8 )

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-18
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKEL 71
           P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+
Sbjct: 260 PEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEI 319

Query: 72  RPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELG 121
             L P   ++K+    +     W GGS+LAS  +F+ M ++KAEY+E G
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAG 368

[Close]

BLAST of Lsi11G003350 vs. TAIR 10
Match: AT3G18780.2 (actin 2 )

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-18
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 12  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKEL 71
           P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+
Sbjct: 260 PEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEI 319

Query: 72  RPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELG 121
             L P   ++K+    +     W GGS+LAS  +F+ M ++KAEY+E G
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAG 368

[Close]

BLAST of Lsi11G003350 vs. TAIR 10
Match: AT2G37620.1 (actin 1 )

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-18
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 12  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKEL 71
           P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+
Sbjct: 260 PEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI 319

Query: 72  RPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELG 121
             L P   ++K+    +     W GGS+LAS  +F+ M + KAEY+E G
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368

[Close]

BLAST of Lsi11G003350 vs. TAIR 10
Match: AT2G37620.2 (actin 1 )

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-18
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 12  PFGLRQPVETGMNQAGLAECIVRAVNSCHPHLHPVLYESIVLTGGSTLFHNFAERLEKEL 71
           P  L QP   GM  AG+ E    ++  C   +   LY +IVL+GG+T+F   A+R+ KE+
Sbjct: 260 PEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEI 319

Query: 72  RPLVPDECQVKITTQEDPILGAWRGGSLLASSPSFEAMCVTKAEYEELG 121
             L P   ++K+    +     W GGS+LAS  +F+ M + KAEY+E G
Sbjct: 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368

The following BLAST results are available for this feature:

BLAST of Lsi11G003350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE3	2.3e-50	78.33	Actin-related protein 6 OS=Arabidopsis thaliana OX=3702 GN=ARP6 PE=1 SV=1	[more]
A2WNB0	4.3e-49	73.33	Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1	[more]
Q5NBI2	4.3e-49	73.33	Actin-related protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARP6 PE=2 SV...	[more]
Q54KZ7	4.1e-23	45.38	Actin-related protein 6 OS=Dictyostelium discoideum OX=44689 GN=arpF PE=3 SV=1	[more]
Q9GZN1	2.7e-19	36.13	Actin-related protein 6 OS=Homo sapiens OX=9606 GN=ACTR6 PE=1 SV=1	[more]

BLAST of Lsi11G003350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFL4	1.1e-58	100.00	Actin-related protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DYD3	1.8e-58	92.50	actin-related protein 6 OS=Cucumis melo OX=3656 GN=LOC103496716 PE=3 SV=1	[more]
A0A5A7V987	1.8e-58	92.50	Actin-related protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LL11	4.1e-58	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007400 PE=3 SV=1	[more]
A0A6J1CNA2	2.0e-57	90.00	actin-related protein 6 OS=Momordica charantia OX=3673 GN=LOC111013159 PE=3 SV=1	[more]

BLAST of Lsi11G003350 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97864.1	2.2e-58	100.00	actin-related protein 6 [Cucumis melo var. makuwa]	[more]
XP_016900982.1	3.8e-58	92.50	PREDICTED: actin-related protein 6 [Cucumis melo] >XP_016900983.1 PREDICTED: act...	[more]
XP_031736832.1	8.4e-58	91.67	actin-related protein 6 [Cucumis sativus] >KGN60696.1 hypothetical protein Csa_0...	[more]
XP_038890803.1	1.1e-57	91.67	LOW QUALITY PROTEIN: actin-related protein 6 [Benincasa hispida]	[more]
XP_023545835.1	2.4e-57	90.00	actin-related protein 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi11G003350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G33520.1	1.6e-51	78.33	actin-related protein 6	[more]
AT1G49240.1	6.9e-18	37.61	actin 8	[more]
AT3G18780.2	6.9e-18	37.61	actin 2	[more]
AT2G37620.1	9.1e-18	37.61	actin 1	[more]
AT2G37620.2	9.1e-18	37.61	actin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.40		coord: 93..121 e-value: 2.1E-33 score: 117.4
None	No IPR available	GENE3D	3.90.640.10	Actin; Chain A, domain 4	coord: 11..25 e-value: 2.1E-33 score: 117.4
None	No IPR available	GENE3D	3.30.420.40		coord: 26..92 e-value: 2.1E-33 score: 117.4
None	No IPR available	PANTHER	PTHR11937:SF465	SUBFAMILY NOT NAMED	coord: 11..126
IPR004000	Actin family	PFAM	PF00022	Actin	coord: 23..128 e-value: 4.8E-38 score: 130.8
IPR004000	Actin family	PANTHER	PTHR11937	ACTIN	coord: 11..126
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	53067	Actin-like ATPase domain	coord: 8..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003350.1	Lsi11G003350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus