Lsi11G002940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Plant/protein
Location	chr11: 3036416 .. 3036748 (+)
RNA-Seq Expression	Lsi11G002940
Synteny	Lsi11G002940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCAATCTACTCATCTTTCGCCCCATCGGAATCCGACCATCTGCCACCTCCGGCTCCGACTTCGGTCACCGGAAACCTCAACCCCACCAGCAAGGGAGGCCTCAATGGAGGCCTGGCCTGCTTGACTACATCAGTGACAGCACGGAGCCAGATTTGGATTCAACAGAGAAGGTGGCAGAATCCCGATTCTCAATCGGTTGCTTCACGGAGGAAAAGGCGAGGCAACTCCGAATTATGACAACGAAGGGTAATTCGTTTCAGGACGGAATGTACCATTCAGCCATTGCATCTCGCCTGGCTTCTGATTTCTCAAACACTAACAAATAG

mRNA sequence

ATGACCACCAATCTACTCATCTTTCGCCCCATCGGAATCCGACCATCTGCCACCTCCGGCTCCGACTTCGGTCACCGGAAACCTCAACCCCACCAGCAAGGGAGGCCTCAATGGAGGCCTGGCCTGCTTGACTACATCAGTGACAGCACGGAGCCAGATTTGGATTCAACAGAGAAGGTGGCAGAATCCCGATTCTCAATCGGTTGCTTCACGGAGGAAAAGGCGAGGCAACTCCGAATTATGACAACGAAGGGTAATTCGTTTCAGGACGGAATGTACCATTCAGCCATTGCATCTCGCCTGGCTTCTGATTTCTCAAACACTAACAAATAG

Coding sequence (CDS)

ATGACCACCAATCTACTCATCTTTCGCCCCATCGGAATCCGACCATCTGCCACCTCCGGCTCCGACTTCGGTCACCGGAAACCTCAACCCCACCAGCAAGGGAGGCCTCAATGGAGGCCTGGCCTGCTTGACTACATCAGTGACAGCACGGAGCCAGATTTGGATTCAACAGAGAAGGTGGCAGAATCCCGATTCTCAATCGGTTGCTTCACGGAGGAAAAGGCGAGGCAACTCCGAATTATGACAACGAAGGGTAATTCGTTTCAGGACGGAATGTACCATTCAGCCATTGCATCTCGCCTGGCTTCTGATTTCTCAAACACTAACAAATAG

Protein sequence

MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNTNK

Homology

[Close]

BLAST of Lsi11G002940 vs. ExPASy TrEMBL
Match: A0A5A7V2V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001490 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.0e-41
Identity = 88/109 (80.73%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKV 60
           MTTNLLIFRPI I+ SATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEPDLDSTEEV 60

Query: 61  AESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNTN 110
            ES+ S+GCFT EKA+QLRIMTTK NSF DGMYHSAIASRLASDFSNTN
Sbjct: 61  TESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTN 108

[Close]

BLAST of Lsi11G002940 vs. ExPASy TrEMBL
Match: A0A6J1KDY2 (uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.5e-29
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS---- 60
           MTTNLL+FRPIGIRPSA++G+  GHRKP P +  RP W+P   + I++  +PD +S    
Sbjct: 1   MTTNLLVFRPIGIRPSASAGT--GHRKPDPQRHYRPWWKPCPPNKITEGAQPDPNSDSNS 60

Query: 61  --TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNT 109
              EK A SRFS GC T EKARQLRIMT+K + FQDGMYHS +ASRLASDFSNT
Sbjct: 61  NLAEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNT 112

[Close]

BLAST of Lsi11G002940 vs. ExPASy TrEMBL
Match: A0A5D3BEV3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00030 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKV 60
          MTTNLLIFRPI I+PSATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEPDLDSTEEV 60

Query: 61 AESRFSIGCFTEE 74
           ES+ S+GCF  E
Sbjct: 61 TESQLSVGCFRGE 73

[Close]

BLAST of Lsi11G002940 vs. ExPASy TrEMBL
Match: A0A0A0LI01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006010 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MTTNLLIFRPIGIRPSATSGSDFGHRKP--QPHQQGRPQWRPGLLDYISDSTEPDLDSTE 60
          MTTNLLIFRPI I+PSATSGS  GHRKP   P + G PQWR    DYI D+ EPD  ST+
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPISIPCRHGWPQWRLDPPDYIGDNVEPDSYSTK 60

Query: 61 KVAESRFSIGCFTEEKARQLRIMTTKGNS 88
          KV ES+ S GC TEEKA+QLRIMTT+ N+
Sbjct: 61 KVTESQLSAGCLTEEKAKQLRIMTTRYNT 89

[Close]

BLAST of Lsi11G002940 vs. ExPASy TrEMBL
Match: A0A4V3WM73 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023489 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 64/129 (49.61%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQ---WRP-----GLLDYI--SDST 60
           M T+L  FRPIG+R   T     GHRKP  H++       W P        DYI  +DST
Sbjct: 1   MATSLGAFRPIGVRACTTG----GHRKPDTHRRKSTSSNWWTPLFGWSSEPDYIDSADST 60

Query: 61  EPD----------LDSTEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASR 110
             D           D  +K A SRFS GCFTEEKARQLR+MT + +SF D MYHSAIASR
Sbjct: 61  NADPSAKSESKSASDLDQKSARSRFSPGCFTEEKARQLRLMTKETSSFHDVMYHSAIASR 120

[Close]

BLAST of Lsi11G002940 vs. NCBI nr
Match: KAA0061584.1 (hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 88/109 (80.73%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKV 60
           MTTNLLIFRPI I+ SATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEPDLDSTEEV 60

Query: 61  AESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNTN 110
            ES+ S+GCFT EKA+QLRIMTTK NSF DGMYHSAIASRLASDFSNTN
Sbjct: 61  TESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTN 108

[Close]

BLAST of Lsi11G002940 vs. NCBI nr
Match: XP_022998955.1 (uncharacterized protein LOC111493481 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDS---- 60
           MTTNLL+FRPIGIRPSA++G+  GHRKP P +  RP W+P   + I++  +PD +S    
Sbjct: 1   MTTNLLVFRPIGIRPSASAGT--GHRKPDPQRHYRPWWKPCPPNKITEGAQPDPNSDSNS 60

Query: 61  --TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNT 109
              EK A SRFS GC T EKARQLRIMT+K + FQDGMYHS +ASRLASDFSNT
Sbjct: 61  NLAEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNT 112

[Close]

BLAST of Lsi11G002940 vs. NCBI nr
Match: KAG7030406.1 (hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDS 60
           MTTNLL+FRPIGIRPSA++G+  GHRK  P +  RP W+P   + I++  +P    D +S
Sbjct: 1   MTTNLLVFRPIGIRPSASAGT--GHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDSNS 60

Query: 61  TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNT 109
            EK A SRFS G  T EKARQLRIMT+K + FQDGMYHS +ASRLASDFSNT
Sbjct: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNT 110

[Close]

BLAST of Lsi11G002940 vs. NCBI nr
Match: KAG6599416.1 (hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEP----DLDS 60
           MTTNLL+FRPIGIRPSA++G+  GHRK  P +  RP W+P   + I++  +P    D +S
Sbjct: 1   MTTNLLVFRPIGIRPSASAGT--GHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNS 60

Query: 61  TEKVAESRFSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFSNT 109
            EK A SRFS G  T EKARQLRIMT+K + FQDGMYHS +ASRLASDFSNT
Sbjct: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNT 110

[Close]

BLAST of Lsi11G002940 vs. NCBI nr
Match: TYJ97793.1 (hypothetical protein E5676_scaffold285G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MTTNLLIFRPIGIRPSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKV 60
          MTTNLLIFRPI I+PSATSGS  GHRKP PH++GRPQWRP L DYISD+ EPDLDSTE+V
Sbjct: 1  MTTNLLIFRPIRIQPSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEPDLDSTEEV 60

Query: 61 AESRFSIGCFTEE 74
           ES+ S+GCF  E
Sbjct: 61 TESQLSVGCFRGE 73

[Close]

BLAST of Lsi11G002940 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-10
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 15  PSATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPDLDSTEKVAE----------SR 74
           P+  + S  G   P  +++    W   L    SD    +++S+                +
Sbjct: 11  PTIRASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGSGQK 70

Query: 75  FSIGCFTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASDFS 107
           F  GCFTEEKA+QLR  T + ++F D MYHSAIASRLASD +
Sbjct: 71  FRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDIT 112

[Close]

BLAST of Lsi11G002940 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-09
Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 17  ATSGSDFGHRKPQPHQQGRPQWRPGLLDYISDSTEPD-------LDSTEKVAESRFSIGC 76
           A+S SD   +KP         W P        S+EPD       L+S    AE R    C
Sbjct: 15  ASSESDPARKKP---VSSVSWWAP----LFGMSSEPDYVNKTVNLESDLDKAEKRSLRCC 74

Query: 77  FTEEKARQLRIMTTKGNSFQDGMYHSAIASRLASD 105
            TEEKA+QLR  T + ++F D MYHSAIASRLASD
Sbjct: 75  LTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASD 102

The following BLAST results are available for this feature:

BLAST of Lsi11G002940 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G002940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2V1	5.0e-41	80.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KDY2	7.5e-29	62.28	uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481...	[more]
A0A5D3BEV3	2.1e-23	75.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LI01	1.2e-21	66.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006010 PE=4 SV=1	[more]
A0A4V3WM73	2.3e-17	49.61	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0234...	[more]

BLAST of Lsi11G002940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061584.1	1.0e-40	80.73	hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa]	[more]
XP_022998955.1	1.5e-28	62.28	uncharacterized protein LOC111493481 [Cucurbita maxima]	[more]
KAG7030406.1	1.4e-26	61.61	hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599416.1	1.4e-26	61.61	hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYJ97793.1	4.4e-23	75.34	hypothetical protein E5676_scaffold285G00030 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G002940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	4.5e-10	36.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	5.0e-09	44.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..40
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 53..108
None	No IPR available	PANTHER	PTHR34198:SF18	PROTEIN, PUTATIVE-RELATED	coord: 53..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002940.1	Lsi11G002940.1	mRNA