Lsi11G002740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	HMA domain-containing protein
Location	chr11: 2799475 .. 2803761 (+)
RNA-Seq Expression	Lsi11G002740
Synteny	Lsi11G002740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTTAACCACTTAAAGTTTTAAAATTGTATCCATCAATTTATATAATTTATTAGCGATAATGCATAGTTATTTCCACTTCTTTATTTAAATAAATAATAAAATCATATCAAAATGATAAGAATATTCTTCGTGTAATTCTTCGTAAACAAGCCGAGAAAGAAGAATAAGGAAAGACAAAAAAAAATTAAGAAAAGTTGTTAATTAATTATTTATTTATTTTAATACAACAACGGTAAATGTGTGGAGGTGGAATGTTGAACATTCAATCTCTAGAGTTGAAAAGTTATATCAATTACCATTGAACTGTTAACTACACATTTGATTCTAGTGTTTTTCTCCAATGTTGTGTTAAGTTCACATATATGTATGAATTATATGCAATGATATTGGATGATTTAAAATTTAACTTATAAAAACAAGTGAAATGGATTCATTTTATGAAATAGTTTAATATTTTAATAGATACAACGGTTAGTTTAAAAGTTTGGTTAAATTAAAAATTTAGAGTCCAATGTCAAACGGTAAAAGTAAATGTGAGTCATACTGTAACAATAATAATAATAACGTAATTTTCAACTACAATCGAATTAATCCCTCTCTACTCCTCAATAAGATCATATTGTACTTTTTATTACAGATTCAAAGTGAGACCCATATATTAGTACGGGTATGCAACACAAGTAAACAACACCAAATAAATCAATCAAACCCACTTTTTAAATTATCATTAATTCATTGCGTTTCACCCCGAATAAACGTGGCCTAAATTTTCGTGCCGCTTAAAAATAAATAAAAAAATAGTCTCGTGATATTGTGTGATTGAACAGTATATAAATGTCTATTCATTCATTTGTTTATCTTTCTGAGACTCGGTTTAAGGACAGAGAGGAAGAGAGATCCAGAGAGCGTTGGGAATGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGCTTCCAGTTCGTGCTTGTGCTTGGAAAATGAAGACAACTTCGATCAGAAACAGCCATTAATGGCTAAACAAACAACATCGTCTCAGCTTCTCGGATTCAAGGATGCGATTGCTCATCAAAACCAAACCCTTGCTCTTCATTTGAACCCCAAGGTCAGATCAGATTCCCAACCTTTTTTTTTATTATTATTATTATCATTATTATATTTGTTAAAAGTTTGTTTATTATTTAAGATTCTATCGTTTTTCAAATCGGTATTAAAAAAAGAAAATTTTTTAAAAATAGAAAAATTAGATAAAGTATATACCCAAAATAACAAAAATTTTATATATTTGTGATAGACGCCGGTAATAGACGCCAATAATAAAAATGATAGAAGCATATCATTGACTGTGTGTCAATGTCTCTTAGTGTTTTATTGTTGTATTCTGTAAATGGTTCAACATTTTTTCTATCTGTAAAAATTTTCTTAAAAAAACGTTGTTTTCAAATATAGAGAAATGAGTCAAACTATTTATAAATATTGAAATATTTAATTATATAGATTTTTATCGCTGATAGATAGTAAAATTTTTATATATTTGTAAGTAGTTTGATATTTTTTTGATTTATAATAATTTTCCTAAAAAAAAATATATCTTATACTTTGAGATTCATTACACCGTCCTTCATGTATTTTCTAGGTTGTAATTTCTTGTTTTCAATAAATCCTTAAATTTGTTTTGTTATTATTCTTTTACCATATTGGATTAAAAAAAAAAAAACTCCAAACTATTCATAAAATTTATTTGAAAAGACAAAACTAAAATAGAATGAATTTCAAACCAATTGGGTTTAAATGGTTAGTCTGTGTTTAGATTAGAGACGTCTATTCTCTATGTAGAGATCCACCCTGGGATGAGAACGGGGAAGGATTGGGGTGAAAACAATTTCGGTAAGCTAAACGGAATTCTCTCTCCTGTCCCTGCTCCCATCCCGCCCTATTCCCCATCCGTACATTGATTATCCAAATTTTAAATATTTTATTATTATTATTATTGTAACTATATGTACATAATTTTCTAAATTTTAAGTTTTATAGTTGAATATGACTGGATAATTTTATGTGTTTGAATCATAGAGTTGAACATTTAGAGTATTGATAATTATATAATATAATAGATTAATTTCATTTTTTTATGAAAAACTAAGACCCATTTGGTAATCATTTTGTTTTTAGTTTTTAGTTTTTGATTTTTTATTTTTGAAAATTATGCCTCTAAACACACTCATTCCACGTCTACATTTTAATCTATTCTTTAATAATATTTTAAAAAATTAAGCAAAAATTTGAAAACTTATTTTTATTTTTGAAATTTGGCTAAGAATTGAACTCTCGTAATTAAGAAAGACGCAAACTATTGTAAAAATCAAGAAAAAATAAACTTGATAAAAAAAACTAAAAAATGAACTAGTTACCACACGAGATATGAGTATTTAGCTAGAAAAATAATAAAATAAAACATGTTTTGTTTAACTGGATTTTTTTTAACAAAAAAAAAAAAAAACTAAAAGGGGATTAATTTCCTTGAAGAAATTCAACTACAGTTAATTTTTTACCTTAAATTTCTACATTTATCCTTATAAAAATTGACTAAAATTTTTGCAGAAATGGAAAATGAAATGAGAGACGCACCTGCCATGAACATCTAGTTTAATGTAAACTTGAATAGTTATTTTCATTTTAGAATATGATAGTTTATGCTTTAAAAAAATAGTTTATGAATCAAAACAAAATGTCAACCAAATATGACTCAATTTGGTTGAGTATTTTAGATTAAAAAAAAAAAAAATTATAGATTTGAATCTCTACTCGTATTGGTTGAATTAAAAAATAAAAATAGACAATCTTAAAAATTATAGTAGTAGGAAACTAATAATTTATTGTGTTATTATTTTTAAAAATAAGCACGTGTAAGTGACACTTCACTTTTTTTTTCTTTTTTTTTTTAAATAAAAAAAGAAAGAGAAAAAATGTATAGCTTTAAAAAAAACTCTTTTTCTTGGTACTAACATTTTAAAAATCATATCTAATATTCATTTTTTAAATTAAAAGAAATTGAGGAATACATTTAGTGATTTTGTAAATACCCAACAAATTTCAGGTGGTGGCGCTGAGGGTGTCAATGCATTGCAGTGGCTGTGCCAGAAGGGTTGAGAAGCACATCTCCAAGATAGAAGGTAATCGTTTTTTTTTTGTTTTTTTTATTATTATAATTCTCTTTATAGCAATTTATTTAAATAATAAAATATAAAATAAAAAGGATTATTTTCAAAAATAAAAAAAATAGCAAACTATTTACAAATATATAAAATTTTTACTAACTATCTGAAATAGACCACGATAGACTTTTATCACTACGTGATAAACTGCAATAGACTTCTATCGCTCAGTAATAGAAGTTTATCGCGATCTATCGCAGTCCATCGTGGATAGACAATAAAAAAATTTTATATGATAAATAGTTTAATATTTTTTTCATTTATTATAATTTTTCAAATAAAAACAAACTTATTGAATTAAATTTATCATGGACTATGAAAGGAGTTCAATTTTCAAGGGGAAACACTCATTTAAGTACAATTTTGTGAAATTTGTGTTTAAGTACAACTTTGTAATTTTGGAGTTTGATTCGAATTTAATTTTTCAAATTTTAACTTATATTCTTTCTATTAAAATGTTAAAAATAGTTTTTTTTTTTTAGCAAGTGAAACGTTGATATTGTCAAATGAAACATTATTTGCAAGTATCAAAACAAAGACCTAAAATAAATATATCATAACAAATATATTAAATTTATATTATTGCTTACGAGAGTTTCATTTTCAAGAGGAGAAAAATACTCATCATTATCCCTTCCATAATTTAAATACATTTTGTAAATTTGGAGTTTGATTCCAACTATTTTTTCTTTTTACTAAAATTGTAACTTAAGACCTTTCTACTAAAATTAACATTGTCAAATGATACTTTCTTTAATCAATATATCACAACAAATATATTAAATCATTAAAAAATGCATAATATGAACTAAACAAATTATATAGTATACGTGTAACGCCCTTGATTATTTATTAATATTTTATAAAAGATTGTGAGATATGTTGATCGTTTTTTAATTAAAAAAAATTACTTTCAGGTGTGGATTCATACAAGGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTTATGCAATGCATTTCTAAAGTGAAAAGTGTAGAGATTCTGGAACATCAAGACTAA

mRNA sequence

ATGAGAGGACAGAGAGGAAGAGAGATCCAGAGAGCGTTGGGAATGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGCTTCCAGTTCGTGCTTGTGCTTGGAAAATGAAGACAACTTCGATCAGAAACAGCCATTAATGGCTAAACAAACAACATCGTCTCAGCTTCTCGGATTCAAGGATGCGATTGCTCATCAAAACCAAACCCTTGCTCTTCATTTGAACCCCAAGAAATTGAGGAATACATTTAGTGATTTTGTAAATACCCAACAAATTTCAGGTGGTGGCGCTGAGGGTGTCAATGCATTGCAGTGGCTGTGCCAGAAGGGTGTGGATTCATACAAGGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTTATGCAATGCATTTCTAAAGTGAAAAGTGTAGAGATTCTGGAACATCAAGACTAA

Coding sequence (CDS)

ATGAGAGGACAGAGAGGAAGAGAGATCCAGAGAGCGTTGGGAATGGGAAAACTGGTGATGGGCATTGGGAAAGTATTTTCATGTTTCATAAATACAACAGCTTCCAGTTCGTGCTTGTGCTTGGAAAATGAAGACAACTTCGATCAGAAACAGCCATTAATGGCTAAACAAACAACATCGTCTCAGCTTCTCGGATTCAAGGATGCGATTGCTCATCAAAACCAAACCCTTGCTCTTCATTTGAACCCCAAGAAATTGAGGAATACATTTAGTGATTTTGTAAATACCCAACAAATTTCAGGTGGTGGCGCTGAGGGTGTCAATGCATTGCAGTGGCTGTGCCAGAAGGGTGTGGATTCATACAAGGTAGATATGGAAAGGGAGATGGTGGTTGTTACTGGAGATGTTTTTCCTTTTGAAGTTATGCAATGCATTTCTAAAGTGAAAAGTGTAGAGATTCTGGAACATCAAGACTAA

Protein sequence

MRGQRGREIQRALGMGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVEILEHQD

Homology

[Close]

BLAST of Lsi11G002740 vs. ExPASy TrEMBL
Match: A0A5A7V1Y2 (Copper-binding family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001300 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 96/153 (62.75%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGF 74
           MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 75  KDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDM 134
           KD I HQN+TL  L  NPK +       V       G A  V  L    Q GV+S+KVDM
Sbjct: 61  KDVITHQNKTLRPLQFNPKVV------MVRVSMHCNGCARRVEKLISKIQ-GVESWKVDM 120

Query: 135 EREMVVVTGDVFPFEVMQCISKVKSVEILEHQD 159
           ERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Sbjct: 121 ERERVVVTGDVFPFEVMECISKVKSVEILESQD 146

[Close]

BLAST of Lsi11G002740 vs. ExPASy TrEMBL
Match: A0A1S3C8H9 (uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 96/153 (62.75%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGF 74
           MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 75  KDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDM 134
           KD I HQN+TL  L  NPK +       V       G A  V  L    Q GV+S+KVDM
Sbjct: 61  KDVITHQNKTLRPLQFNPKVV------MVRVSMHCNGCARRVEKLISKIQ-GVESWKVDM 120

Query: 135 EREMVVVTGDVFPFEVMQCISKVKSVEILEHQD 159
           ERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Sbjct: 121 ERERVVVTGDVFPFEVMECISKVKSVEILESQD 146

[Close]

BLAST of Lsi11G002740 vs. ExPASy TrEMBL
Match: A0A6J1KFP0 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493873 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 77/144 (53.47%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQN 74
           MGK V GIGKVFSCF+N+ ASSS  C E E  F+ KQPLM  Q  +S LL F D I+H N
Sbjct: 1   MGKAV-GIGKVFSCFMNSRASSS--CFEIEGTFEPKQPLMPNQ-PNSHLLRFNDVISHTN 60

Query: 75  QTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTG 134
           Q      NPK +    S   N      G A  V       + GVDS+KVD ER+ VVVTG
Sbjct: 61  Q----QTNPKVVELRVSMHCN------GCARRVEKNIGKIE-GVDSFKVDFERKTVVVTG 120

Query: 135 DVFPFEVMQCISKVKSVEILEHQD 159
           DV  FEV+QC+SKV+SVEILEHQ+
Sbjct: 121 DVSSFEVIQCVSKVRSVEILEHQE 129

[Close]

BLAST of Lsi11G002740 vs. ExPASy TrEMBL
Match: A0A6J1G3J1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450448 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 75/144 (52.08%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQN 74
           MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H N
Sbjct: 1   MGKAV-GIGKVFSCFMNSGASSS--CFQIEATFEPKQPLMPNQ-PNSHLLRLNDVISHTN 60

Query: 75  QTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTG 134
           Q      NPK +    S   N      G A  V       + GVDSYKVD ER+ VVVTG
Sbjct: 61  Q----QANPKVVELRVSMHCN------GCARRVEKNIGKIE-GVDSYKVDFERKTVVVTG 120

Query: 135 DVFPFEVMQCISKVKSVEILEHQD 159
           DV  FEV+QC+SKV+SVEILE Q+
Sbjct: 121 DVSSFEVIQCVSKVRSVEILEPQE 129

[Close]

BLAST of Lsi11G002740 vs. ExPASy TrEMBL
Match: A0A0A0LIU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.4e-17
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 15 MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFK 74
          MGKLVM IGKVFSCFINTT +S+SC    L +E+ +NFDQKQPLM KQTTS+   LLGFK
Sbjct: 1  MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60

Query: 75 DAIAHQNQTLALHLNPK 85
          D I HQN+TL L  NPK
Sbjct: 61 DVITHQNETLPLQFNPK 77

[Close]

BLAST of Lsi11G002740 vs. NCBI nr
Match: XP_008458177.1 (PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo] >KAA0061568.1 copper-binding family protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-35
Identity = 96/153 (62.75%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLC------LENEDNFDQKQPLMAKQTTSS--QLLGF 74
           MGKLV+ IGKVFSCFINTT SSS  C      +E+ +NFDQKQPLMAKQTTS+   LLGF
Sbjct: 1   MGKLVLSIGKVFSCFINTTDSSSTSCCLYRFEIEDSNNFDQKQPLMAKQTTSTTHDLLGF 60

Query: 75  KDAIAHQNQTL-ALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDM 134
           KD I HQN+TL  L  NPK +       V       G A  V  L    Q GV+S+KVDM
Sbjct: 61  KDVITHQNKTLRPLQFNPKVV------MVRVSMHCNGCARRVEKLISKIQ-GVESWKVDM 120

Query: 135 EREMVVVTGDVFPFEVMQCISKVKSVEILEHQD 159
           ERE VVVTGDVFPFEVM+CISKVKSVEILE QD
Sbjct: 121 ERERVVVTGDVFPFEVMECISKVKSVEILESQD 146

[Close]

BLAST of Lsi11G002740 vs. NCBI nr
Match: XP_031736582.1 (uncharacterized protein LOC116402031 [Cucumis sativus] >KAE8651518.1 hypothetical protein Csa_019330 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 95/150 (63.33%), Postives = 105/150 (70.00%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTT-ASSSC----LCLENEDNFDQKQPLMAKQTTSS--QLLGFK 74
           MGKLVM IGKVFSCFINTT +S+SC    L +E+ +NFDQKQPLM KQTTS+   LLGFK
Sbjct: 1   MGKLVMSIGKVFSCFINTTDSSTSCNLYRLEIEDSNNFDQKQPLMPKQTTSTTHDLLGFK 60

Query: 75  DAIAHQNQTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMER 134
           D I HQN+TL L  NPK +       V       G A  V       Q GV+S+KVDMER
Sbjct: 61  DVITHQNETLPLQFNPKVV------VVRVSMHCNGCARRVEKHISKIQ-GVESWKVDMER 120

Query: 135 EMVVVTGDVFPFEVMQCISKVKSVEILEHQ 158
           E VVVTGDVFPFEVMQCISKVKSVEILE Q
Sbjct: 121 ETVVVTGDVFPFEVMQCISKVKSVEILEPQ 143

[Close]

BLAST of Lsi11G002740 vs. NCBI nr
Match: XP_022999545.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-22
Identity = 77/144 (53.47%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQN 74
           MGK V GIGKVFSCF+N+ ASSS  C E E  F+ KQPLM  Q  +S LL F D I+H N
Sbjct: 1   MGKAV-GIGKVFSCFMNSRASSS--CFEIEGTFEPKQPLMPNQ-PNSHLLRFNDVISHTN 60

Query: 75  QTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTG 134
           Q      NPK +    S   N      G A  V       + GVDS+KVD ER+ VVVTG
Sbjct: 61  Q----QTNPKVVELRVSMHCN------GCARRVEKNIGKIE-GVDSFKVDFERKTVVVTG 120

Query: 135 DVFPFEVMQCISKVKSVEILEHQD 159
           DV  FEV+QC+SKV+SVEILEHQ+
Sbjct: 121 DVSSFEVIQCVSKVRSVEILEHQE 129

[Close]

BLAST of Lsi11G002740 vs. NCBI nr
Match: XP_022946348.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-20
Identity = 75/144 (52.08%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQN 74
           MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H N
Sbjct: 1   MGKAV-GIGKVFSCFMNSGASSS--CFQIEATFEPKQPLMPNQ-PNSHLLRLNDVISHTN 60

Query: 75  QTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTG 134
           Q      NPK +    S   N      G A  V       + GVDSYKVD ER+ VVVTG
Sbjct: 61  Q----QANPKVVELRVSMHCN------GCARRVEKNIGKIE-GVDSYKVDFERKTVVVTG 120

Query: 135 DVFPFEVMQCISKVKSVEILEHQD 159
           DV  FEV+QC+SKV+SVEILE Q+
Sbjct: 121 DVSSFEVIQCVSKVRSVEILEPQE 129

[Close]

BLAST of Lsi11G002740 vs. NCBI nr
Match: KAG7030420.1 (Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-20
Identity = 75/144 (52.08%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLENEDNFDQKQPLMAKQTTSSQLLGFKDAIAHQN 74
           MGK V GIGKVFSCF+N+ ASSS  C + E  F+ KQPLM  Q  +S LL   D I+H N
Sbjct: 1   MGKAV-GIGKVFSCFMNSGASSS--CFQIEATFEPKQPLMPNQ-PNSHLLRLNDVISHTN 60

Query: 75  QTLALHLNPKKLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMEREMVVVTG 134
           Q      NPK +    S   N      G A  V       + GVDSYKVD ER+ VVVTG
Sbjct: 61  Q----QTNPKVVELRVSMHCN------GCARRVEKNIGKIE-GVDSYKVDFERKTVVVTG 120

Query: 135 DVFPFEVMQCISKVKSVEILEHQD 159
           DV  FEV+QC+SKV+SVEILE Q+
Sbjct: 121 DVSSFEVIQCVSKVRSVEILEPQE 129

[Close]

BLAST of Lsi11G002740 vs. TAIR 10
Match: AT3G24450.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 15  MGKLVMGIGKVFSCFINTTASSSCLCLE---NEDNFDQKQPLMAKQT-TSSQLLGFKDAI 74
           MGKL   IG+V+ C    T   SC CL    +E+   +K+PL+   T  S +++  KD +
Sbjct: 1   MGKL-QKIGRVWDCLFLPTNQCSCFCLNTLGDEEEEFEKEPLIDSSTEKSGKVMRLKDVV 60

Query: 75  -AHQNQTLALHLNPK--KLRNTFSDFVNTQQISGGGAEGVNALQWLCQKGVDSYKVDMER 134
            A   QTLA HL PK  +L+ +   +   +++     + ++ L      GV  YKV++E 
Sbjct: 61  AADHRQTLAFHLKPKIVELKVSMHCYGCAKKVE----KHISKLD-----GVTWYKVELES 120

Query: 135 EMVVVTGDVFPFEVMQCISKVKSVEI 154
           + VVV G++ P +V++ I KVK+ ++
Sbjct: 121 KKVVVKGNILPVDVLESICKVKNAQL 136

[Close]

BLAST of Lsi11G002740 vs. TAIR 10
Match: AT3G53530.2 (Chloroplast-targeted copper chaperone protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 115 QKGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE 153
           Q GV S+ +D   + V VTGD+ P EV+ C+SKVK+ +
Sbjct: 195 QVGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQ 232

[Close]

BLAST of Lsi11G002740 vs. TAIR 10
Match: AT3G53530.1 (Chloroplast-targeted copper chaperone protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.3e-04
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 116 KGVDSYKVDMEREMVVVTGDVFPFEVMQCISKVKSVE 153
           +GV S+ +D   + V VTGD+ P EV+ C+SKVK+ +
Sbjct: 195 QGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQ 231

The following BLAST results are available for this feature:

BLAST of Lsi11G002740 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G002740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1Y2	2.0e-35	62.75	Copper-binding family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3C8H9	2.0e-35	62.75	uncharacterized protein LOC103497691 OS=Cucumis melo OX=3656 GN=LOC103497691 PE=...	[more]
A0A6J1KFP0	1.5e-22	53.47	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1G3J1	1.4e-20	52.08	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A0A0LIU8	9.4e-17	68.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005290 PE=4 SV=1	[more]

BLAST of Lsi11G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458177.1	4.2e-35	62.75	PREDICTED: uncharacterized protein LOC103497691 [Cucumis melo] >KAA0061568.1 cop...	[more]
XP_031736582.1	3.5e-34	63.33	uncharacterized protein LOC116402031 [Cucumis sativus] >KAE8651518.1 hypothetica...	[more]
XP_022999545.1	3.1e-22	53.47	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022946348.1	2.9e-20	52.08	protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata]	[more]
KAG7030420.1	2.9e-20	52.08	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Lsi11G002740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24450.1	2.6e-11	32.88	Heavy metal transport/detoxification superfamily protein	[more]
AT3G53530.2	3.1e-04	47.37	Chloroplast-targeted copper chaperone protein	[more]
AT3G53530.1	5.3e-04	45.95	Chloroplast-targeted copper chaperone protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 54..157 e-value: 1.8E-5 score: 26.9
None	No IPR available	PANTHER	PTHR46119:SF11	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 22..156
IPR044526	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1/2/3	PANTHER	PTHR46119	OS08G0405700 PROTEIN	coord: 22..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002740.1	Lsi11G002740.1	mRNA