Lsi11G002690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G002690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 2703338 .. 2709471 (-)
RNA-Seq ExpressionLsi11G002690
SyntenyLsi11G002690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTATGGACGAAGTTGAACTGTTGAAGAACATGCTAGGTATCCATTGAACCCTAACTCTTTAGATTGCTATAATCTTTCTTGTCGAGGATTTCCTTCTTAATCCTTCATTTTCATCCTTTTTGAAGCTCATTTTATCTTATCTCGCTGAGTTTTTAGTAGTAGATTTCCTTGTGAAGTTGATTTCGTTTAGTCTTGATTCTGATTCTGAAAAAGTTTGAAAAAATGATCTGTCGCATGCTGTAACTCCAAAAAAAAGTATGCGTAGCTAGAAATCAAACGTAGATATGGAATGAAATCTTTAGCTCTCAATCGATCAATGAACAATTGAATTGAGTTGAATTAATTAATAAGAATCATACACTTCTTGACTAATCTGTAAACTATTCTTTTAAGTATAACGTGTATTCATATAAGTTATATTTTTATCGAATTTTATGATATATCTTGATATTCTTTTAAGTTTCATTGCTATTTTCAAAGTACTCTTTGTATCAACGTTCGAATCCTTTGATTCAGAAATACCGATTGAAATATAAAAGAACGTGTTAGATAAAAATTTACTGCCTGCATATTAGAATTCCTTAGTTAGTTTGAGCTTTTTTTATTCGGTCGTCATGATAGAAGAGTTATACATGAAGAGCAATGTAGGTTTCTTTACTTAGATTTACTCTCCATTCCCTTCTGTAAATTGTTTTTGGAATATTCATCTCCAGAAATGACTTATAAGTATAACATTCATTCCTAGAAATTTGTTTCGGAAACTTCAGTGGAAACCTTTTTCTACCTTGATATATATATATATATATATATATCTATTCAGAGTCCATGAGTCTGCCTATAATATGATGCTACTTTTGTGATTATTGGTGTTTGTAAAATCATTTCGCTAATTGTCATCACATTTTCTAGCTGAACACTCTAGTCCCAAGATAGATTATAATAATAGGAAAACAGTTGACACAAGTTGATTTGTTGCCTTTATAATAATCCTATAAAAGGTAGAAAAATTCCTCCGATTTTACATTCTAGGAGCCAAAAGATTGGTAAATTATCAGTTGGTTAAAGTTAATCTATTATTTTACAAGTTATATGTCACATGTTCAAAAGCTTTCTTCTGGGAAAAGCTCGTCTTTGATGGCCGGAACAATCCACTGGATCTGGATGTAAGTTATTTCCCACAGATCTTCGCCTTCTTTCTTCATCAATATCTCTTTTTCTTTCATGTTTGTGATTATTTTTCTCAATAAATCTGGGACTAACTCTTTCAAACTTGATTCACCATAACTTCCAAGATCAGCCTTCATACAAGTATCCATTCTTCTCAATACCCCAAGCCAAAATGTTCGGAACCCAGCGCTTTCTGATATCTGTTTCAAGTATAGTAAGTAAACATCTGTGAAAAGCTCCATTGAAATCTTTAGAGTACCCTCCATGCTTCTTGCCTCTCTCTCTGCATTATCTCTTCTTGAGTATTCCAACATCTTTTCATGCAAATCATCTACCATTGCAAAAATTATATTGTTAAAACAATTAATACAGTTGGTTGGGGGGAAATCCAATTCTTCTGCCAACACAAAGCTTTTCTTAAGAGATACGATGGCATGGTTTCTTATCTCTTCTCTTCTAGCTAAGCTTGTTTTTCGGAGTGCCTCGCCTAGTTTGAGAAATAAAGTCAAGGAAAAATTAGAAGATCCTAAACCTTTGTCCTCTATTGAGGAGCTACTAGCATTGCTTGCTACACTAAAACTGTTCCCTGATTCTGCACAGTAATTCCTGTACCATTGGACTAAGAAATTTACAGAATCTGATAATAAATCTAAGATTTTCAAGTTCTTGTCTAACGGGCTATTCTTGAGTGCAACATAACTAAAGGCGCAATCTATACAGAAGGTATAGTTTGTGCGTGTTATATGTGTCCCATCAGACATCAACATGATCAAAGTCTCGACTCCTTGGTCATAGGTTTCTGGATGCCGACCAGTGGCTGACAACAAATGAAGAAGTGACTTCCAACCAATTTGACTTTGGAGATTTGCTGGGTACTCAATAATAATCTTGCTTACTGATTGCGTTATGGACTCAAAGCAAGTATCGAGAATCTCCTTATCAAGCATCCACATCAAATTTATAGACTTGAAGATGAGTTCCTCAGGAAGTTTCTCAGGCTGGTAAGTCGAAAGGAGCCTAAGACATACCTTGAAAAGTCCTAAAACAGCCTTTTCTGCAAACGGGATGGCAGAGAAAAGAGGAAATTGAACAACTGCTTGTAGATACTCGTGGAAGCTAGGCCAAAAAACCTGAAACCGGTATAGGTTAGCCATGGTCATTGTTATGATTAGATCCCAACAAAATCCAACAGTTTCTTCTTCTTCAACTGGTGTGCTAAACTTTTGCCCTTTTCCAGCAGCGGCAAATATTAAGGATCGCCCAAGATTGAGCAGAGCCTCATCAAGTATGTTTGAACTGTTGCTAAAGATGTTCCCAATGCGACATTGCTTTACAAACTTCAAATTTTGTTCATATTCATTTAAGTTGAGAGTTAAGGAATCTTCCACACTATCAAGTGATAAAAATTGCGAAAATCGACTGGCCATACCAGAGGATTGCTGGGTGGAAAATTTAGGATCTTGAGAAGGGAAAATCACACCTGATTCTGACCTTGCAACATCATTTGATGAGGTGGAAGCTACTTCAAAGTCAATAACTGATTGGGGAAGTAGTTTAAGTCTTTTGAGTTTTAGTAGGCAATCCACAATGCTCCTCCAACCCCCTCGAATTGAGTCTCCAAAGTTGTTTGCCATGGTGAAAACTGCTAGTGTAGCCAGTTTTGGCTTCAAATCATGACTAAATACGAAAAGTGTTTCTTCTGCAGATGCATAAGGGTTCAATAGAGTAGTGAATTTAGAAAACAGGGCCAGCATTTCATCGAGTGTGTCCTCCAATCCATACTGTGTTATCTTAGCAATGGAGAACAATCCTTCAATGCATTCATTCAGCATCTCATCTTCATCTGCATGCTCAAAGAAAGCTGCAACAGATGCAACTGAAGGACCAGCAATGCAGGCAAACATGTCTCTGCCCAGGCGAGGATCAAAATCACACAACATGAAAGGTTGTATAATCTTGGATCTATTCATCAATTCAACCCATTTGTTAGGATTCATATCAAGTTGCAAGCCTGACTGTGGTGAGAGAATAATTGCATTATTCGAGATCGAATGAAAAAGTTCAGATAAATAATCTCTAGGAAGATCCTTCCCTGCATTAATTTCTCTGTTGTTCCTGATGAACTCGTCTTCTGTCATCTTTTTCTTCACTTGTGGATTATGCTGATCAGTATTTAGCATTATTAAAGAATAGCAAAGAACAAATACTGTATCTTTACTCGCGAAGGTATTTGAAGATTGTAGATCATAAAATCTCTCCGAGAACGCCTCTAATATGCGATGAATCTTTTGCGCTTCTCCCGGCAAACGAAAAGTCTCGAGGTAAGTTCTAAGAGCAGTGTCTAGAATCATACCTGTAAATTCAAAGGTCTCTGTAAACTCTGCCAACACTTTTACGTGAAACTGATCAGGATCACCAAGATATTCACCAATGAACTGTTTGTCCAGTCCATGAGTGTACCTGAAAAAGAAAGCATAAGCTTTTGGGTCCGGAGGATCAGAAACCAATTGAGACAGCTTCAAATATGATAAGCCTTTCTTTTCATCTCGATTGAAATGGTGACCAGCGATCAACATTTTCTTCTTCTGTGCCTTTCTTACTCTTACATACCGCAGCCAAACCTCCAAACCTAAGTCTTCTTTGGATTTTTCTTCCCAAAAGGGTCTATACTCGTTGACTTGAGCTGGATATACCCTTAAACTGCCGCTGCCCCCACGACTTTCTTCTTTATCTTTATCAAGTTTTTCTGCAATGTTGTGAATCACAATTACTAGTCCCTCGAAGGCTTGGATATTTAAAGTGGTTAAGGGGCTTCCTGTAGGAAATGAGAGCTTACATAGCAACTTCCCGATCTCCTCGAGTAAATTCCAACGAAGGGGATCACAGTCATAGTTTACATAGAATTCTAGAATGAAAGAGGACTGTCTGCAGAAGTTGATGATTCCTTCAAGTGCAACTTCTTGGATTTGGGTTGAGTTTCCAAATGATGCTAATTTCAACGCCACATAGACGAAGAATGCTTCTAATTGAAGTCGAACAAACCTATCCAGAGAATGATGAAAATAGATAAGTATCACTTCTGGTTATTTGGTTTCTCTTTTTCTCTTTCTCTAGAATGTGACCCCGAAAATTCCTTCTAAGAAATAAAATTTCCTATGTTTTAACTATTGAGTTCATGTTTTAGGGAAATATTGTGAGATATATTTGACTTCTACATGTCTAATTCTCTCAAAGCCTAGAAAATTCTAGAAATATTTTGTATGAGGAAGACTCAGATTTTTTTCTTTCCCTTTTTTTTTTTTGTTGTTATTTAATAAAAGTTAAATATTGTTTTAGTCAATCTGAATATGTATTGGTGTCGGGATGCTTGTGCTTGAATCAAGTAATGTGTTACAATTATTTAGATTTGTATAACCTAAATTAGGGTAAAACTTTTTTAATACTCCATGCTTAGAACCACGTAATTTTGGTTGATTAAGAATTCATACTACAATGGTTATTATTATTATTATTATTATTATTAATTCATACTACGTGTGGGACAAATCTATTATATTATTTCATATCATGTACTCCTTCATACTTCAAAAAATCATACAAGCCCAACTCGTGACTCAAATGTCTCTTTCAGTCTCCATTTCATTTGTTTTAAACTCTATTATAAATATATATTCATTTACCATATCACCATATTATATATATATATATATATACATATACATACATATATATAATAGTTTTTCTTTAATAAATATAGTTTTAAAAAAATGTTTTAGTTCCTAAACTTTCCGGTAAAGTAACAATTTAAGTTTAAACTTTAAATTGAAACAATTTAGTCTATTTGTCATTGTGTAATAATTTTGCCCCAACTTAATAGGTAAGAATTTAGTTCCTAAACCTTAATAAATTTGGTAACAATTTAGTCTTTATCATGAAAAAATTTACAGAATAAGTTATCAGAATCTTAACCTTAATGTAGCTTAACTGGTGAATGCATATTATACTTTGAGACCAAGAGGTTTAGTTCAAATCTCTCCTCCTATATTATTAAACTGAAAAATAAATAAATCTTCTCTTACGAGTAAGTTTTCTACCTTTGGGGGGACCAAAAAAAAAATTTAGTTACCATTTTTAAAATGTGGGAAAGGGTGTGTGTTTACCTTCGAAGGAAGTGATAGATATTCAAAACTGTACTGCAGATCATGGACAAAACCAGTGGATTTGAAGATGCTCCATAGTGAATGAGATGATGAAACAGATCATCCTGAACCATCCTCAACAGCTTCGGATGCTTCCCAATGGCGTCCCCACTCAACTCCACCGCCGAGTTTATCAACACCAAAGCAAACAACTGAACATCCTCATCCGCCGTCCTTGATCCCCCTCCCATTCCTAACCCATCCCCCATCTCCACCAATTCCACCACATTCAACAACGAACACAGAAAATGAAACACATCTATTACACACCTTATCCCATACCCCGAATCCAAACTCCCCCCTAAATCCGCATCCTCCGTATCCGACTCCGAATCCTCCCCATCTCTCACCTCTATCTCCGGCAGCCTCGAGAATATTATCTGTATCAGCTCATTCATCGTGTACCTCGCCGTCCTCTGCAGCAAATCCCCTCTGCTCGCCGATTGCTGAACCACGTTGAAGCATGTGTTCACAATTGTGCAGACGGATTGATCGTTCAACAGGTAAGAAGCTCTGTGGTTCATCAATCCAGCAAGAACCTGAAGAATTTTCATCATCACGGCGTCTTCGGTAACCAGGTCAGTTTTTTCAAGTTTGCAGTTTGTGATTCCCAATACTATTAAATTGATTGCGTCTTTAACTCCTGGTGTCTTCTCGTTGAAGATTTCCACCTTGATTATTTTGAGTAAGGCGGAGAGAGCGACGCCGGTGGCGGCGGCGGGAATGTCGTCGCTCTGTATGACGTCGAGGATGGGAGAGATGTAG

mRNA sequence

CATTTATGGACGAAGTTGAACTGTTGAAGAACATGCTAGTAGTAGATTTCCTTGTGAAGTTGATTTCGTTTAGTCTTGATTCTGATTCTGAAAAATTATATGTCACATGTTCAAAAGCTTTCTTCTGGGAAAAGCTCGTCTTTGATGGCCGGAACAATCCACTGGATCTGGATTTGGTTGGGGGGAAATCCAATTCTTCTGCCAACACAAAGCTTTTCTTAAGAGATACGATGGCATGGTTTCTTATCTCTTCTCTTCTAGCTAAGCTTGTTTTTCGGAGTGCCTCGCCTAGTTTGAGAAATAAAGTCAAGGAAAAATTAGAAGATCCTAAACCTTTGTCCTCTATTGAGGAGCTACTAGCATTGCTTGCTACACTAAAACTGTTCCCTGATTCTGCACAATCCCAACAAAATCCAACAGTTTCTTCTTCTTCAACTGGTGTGCTAAACTTTTGCCCTTTTCCAGCAGCGGCAAATATTAAGGATCGCCCAAGATTGAGCAGAGCCTCATCAAAAAACAGGGCCAGCATTTCATCGAGTGTGTCCTCCAATCCATACTGTGTTATCTTAGCAATGGAGAACAATCCTTCAATGCATTCATTCAGCATCTCATCTTCATCTGCATGCTCAAAGAAAGCTGCAACAGATGCAACTGAAGGACCAGCAATGCAGGCAAACATGTCTCTGCCCAGGCGAGGATCAAAATCACACAACATGAAAGGTTGTATAATCTTGGATCTATTCATCAATTCAACCCATTTGTTAGGATTCATATCAAGTTGCAAGCCTGACTGTGATCATAAAATCTCTCCGAGAACGCCTCTAATATGCGATGAATCTTTTGCGCTTCTCCCGGCAAACGAAAAGTCTCGAGATCATCCTGAACCATCCTCAACAGCTTCGGATGCTTCCCAATGGCGTCCCCACTCAACTCCACCGCCGAGTTTATCAACACCAAAGCAAACAACTGAACATCCTCATCCGCCGTCCTTGATCCCCCTCCCATTCCTAACCCATCCCCCATCTCCACCAATTCCACCACATTCAACAACGAACACAGAAAATGAAACACATCTATTACACACCTTATCCCATACCCCGAATCCAAACTCCCCCCTAAATCCGCATCCTCCGTATCCGACTCCGAATCCTCCCCATCTCTCACCTCTATCTCCGGCAGCCTCGAGAATATTATCTGTATCAGCTCATTCATCGTGTACCTCGCCGTCCTCTGCAGCAAATCCCCTCTGCTCGCCGATTGCTGAACCACACGGATTGATCGTTCAACAGGTAAGAAGCTCTGTGGTTCATCAATCCAGCAAGAACCTGAAGAATTTTCATCATCACGGCGTCTTCGGTAACCAGTTTGTGATTCCCAATACTATTAAATTGATTGCGTCTTTAACTCCTGGTGTCTTCTCGTTGAAGATTTCCACCTTGATTATTTTGAGTAAGGCGGAGAGAGCGACGCCGGTGGCGGCGGCGGGAATGTCGTCGCTCTGTATGACGTCGAGGATGGGAGAGATGTAG

Coding sequence (CDS)

ATGGACGAAGTTGAACTGTTGAAGAACATGCTAGTAGTAGATTTCCTTGTGAAGTTGATTTCGTTTAGTCTTGATTCTGATTCTGAAAAATTATATGTCACATGTTCAAAAGCTTTCTTCTGGGAAAAGCTCGTCTTTGATGGCCGGAACAATCCACTGGATCTGGATTTGGTTGGGGGGAAATCCAATTCTTCTGCCAACACAAAGCTTTTCTTAAGAGATACGATGGCATGGTTTCTTATCTCTTCTCTTCTAGCTAAGCTTGTTTTTCGGAGTGCCTCGCCTAGTTTGAGAAATAAAGTCAAGGAAAAATTAGAAGATCCTAAACCTTTGTCCTCTATTGAGGAGCTACTAGCATTGCTTGCTACACTAAAACTGTTCCCTGATTCTGCACAATCCCAACAAAATCCAACAGTTTCTTCTTCTTCAACTGGTGTGCTAAACTTTTGCCCTTTTCCAGCAGCGGCAAATATTAAGGATCGCCCAAGATTGAGCAGAGCCTCATCAAAAAACAGGGCCAGCATTTCATCGAGTGTGTCCTCCAATCCATACTGTGTTATCTTAGCAATGGAGAACAATCCTTCAATGCATTCATTCAGCATCTCATCTTCATCTGCATGCTCAAAGAAAGCTGCAACAGATGCAACTGAAGGACCAGCAATGCAGGCAAACATGTCTCTGCCCAGGCGAGGATCAAAATCACACAACATGAAAGGTTGTATAATCTTGGATCTATTCATCAATTCAACCCATTTGTTAGGATTCATATCAAGTTGCAAGCCTGACTGTGATCATAAAATCTCTCCGAGAACGCCTCTAATATGCGATGAATCTTTTGCGCTTCTCCCGGCAAACGAAAAGTCTCGAGATCATCCTGAACCATCCTCAACAGCTTCGGATGCTTCCCAATGGCGTCCCCACTCAACTCCACCGCCGAGTTTATCAACACCAAAGCAAACAACTGAACATCCTCATCCGCCGTCCTTGATCCCCCTCCCATTCCTAACCCATCCCCCATCTCCACCAATTCCACCACATTCAACAACGAACACAGAAAATGAAACACATCTATTACACACCTTATCCCATACCCCGAATCCAAACTCCCCCCTAAATCCGCATCCTCCGTATCCGACTCCGAATCCTCCCCATCTCTCACCTCTATCTCCGGCAGCCTCGAGAATATTATCTGTATCAGCTCATTCATCGTGTACCTCGCCGTCCTCTGCAGCAAATCCCCTCTGCTCGCCGATTGCTGAACCACACGGATTGATCGTTCAACAGGTAAGAAGCTCTGTGGTTCATCAATCCAGCAAGAACCTGAAGAATTTTCATCATCACGGCGTCTTCGGTAACCAGTTTGTGATTCCCAATACTATTAAATTGATTGCGTCTTTAACTCCTGGTGTCTTCTCGTTGAAGATTTCCACCTTGATTATTTTGAGTAAGGCGGAGAGAGCGACGCCGGTGGCGGCGGCGGGAATGTCGTCGCTCTGTATGACGTCGAGGATGGGAGAGATGTAG

Protein sequence

MDEVELLKNMLVVDFLVKLISFSLDSDSEKLYVTCSKAFFWEKLVFDGRNNPLDLDLVGGKSNSSANTKLFLRDTMAWFLISSLLAKLVFRSASPSLRNKVKEKLEDPKPLSSIEELLALLATLKLFPDSAQSQQNPTVSSSSTGVLNFCPFPAAANIKDRPRLSRASSKNRASISSSVSSNPYCVILAMENNPSMHSFSISSSSACSKKAATDATEGPAMQANMSLPRRGSKSHNMKGCIILDLFINSTHLLGFISSCKPDCDHKISPRTPLICDESFALLPANEKSRDHPEPSSTASDASQWRPHSTPPPSLSTPKQTTEHPHPPSLIPLPFLTHPPSPPIPPHSTTNTENETHLLHTLSHTPNPNSPLNPHPPYPTPNPPHLSPLSPAASRILSVSAHSSCTSPSSAANPLCSPIAEPHGLIVQQVRSSVVHQSSKNLKNFHHHGVFGNQFVIPNTIKLIASLTPGVFSLKISTLIILSKAERATPVAAAGMSSLCMTSRMGEM
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 324..346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 368..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..390

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G002690.1Lsi11G002690.1mRNA