Lsi11G002310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	chr11: 2322373 .. 2322729 (+)
RNA-Seq Expression	Lsi11G002310
Synteny	Lsi11G002310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGCTGCTGTGATGGCTGAGACGACAAGAAACTTATCGGCGGCATATCAAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTCGGTTGCTGCCAGATCAGCACTTCCGATTCCGTTGTGGCGGATTTGCCGACGGTGGTGGTCGATCTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCTTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCCAACCGCCGGATTCTTCTTCTTCGACTTTGATCCGACGGTAG

mRNA sequence

ATGGCTGCCGCTGCTGTGATGGCTGAGACGACAAGAAACTTATCGGCGGCATATCAAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTCGGTTGCTGCCAGATCAGCACTTCCGATTCCGTTGTGGCGGATTTGCCGACGGTGGTGGTCGATCTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCTTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCCAACCGCCGGATTCTTCTTCTTCGACTTTGATCCGACGGTAG

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTGATGGCTGAGACGACAAGAAACTTATCGGCGGCATATCAAATCGAATTTCTGTTTGATCTGGACATGGTTCTGTCCGGTGCCGACGACTTCGGTTGCTGCCAGATCAGCACTTCCGATTCCGTTGTGGCGGATTTGCCGACGGTGGTGGTCGATCTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAATCCCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCTTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGGTGCCTCGTCGCCGGCCAACCGCCGGATTCTTCTTCTTCGACTTTGATCCGACGGTAG

Protein sequence

MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR

Homology

[Close]

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-09
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS 111
           C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR  +A    D+
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLADDGNDA 304

[Close]

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-09
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 48  VADLPTVVVDL--------CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC 107
           +  LPTV V          C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+C
Sbjct: 210 ITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVC 269

Query: 108 RCLVAGQPPDSSSST 115
           R  + G+  DS+  T
Sbjct: 270 RKSLNGE--DSTRQT 282

[Close]

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-09
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 48  VADLPTVV-----VDL---CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLC 107
           +  LPTV      VD+   C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+C
Sbjct: 209 ITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVC 268

Query: 108 RCLVAGQPPDSSSST 115
           R  + G+     S +
Sbjct: 269 RKSLNGEDSTRQSQS 283

[Close]

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-09
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 44  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVAD 103
           S S +  LPTV V         + CAVC+++F      KQ+PC HV+H+ C+  WL + +
Sbjct: 192 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 251

Query: 104 CCPLCRCLVAGQPPD 110
            CP+CR  +    PD
Sbjct: 252 SCPVCRFELPTDDPD 266

[Close]

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC++DF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S SSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 97/118 (82.20%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAAAAVM E T NL + Y IEFLFDLD VLSGADD GCCQI+ SDS VAD PTVV D+CA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCL+DF PDE GKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD   STLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 115

[Close]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 96/119 (80.67%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLC 60
           MAAAAVM E T  L + Y IEFLFDLD VLSGADD  C CQI+ SDS VAD PTVV D+C
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 96/119 (80.67%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGC-CQISTSDSVVADLPTVVVDLC 60
           MAAAAVM E T  L + Y IEFLFDLD VLSGADD  C CQI+ SDS VAD PTVV D+C
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           AVCL+DFRPDE GKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD   STLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116

[Close]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.7e-43
Identity = 87/115 (75.65%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQI---STSDSVVADLPTVVVD 60
           MAA AV+AETTRNL+AAY +E LFDLDMVLSG DDFGCC +   ++SDS+VADLPTVV D
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  LCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSS 113
           +CAVC EDFR DEGGKQIPCGHVYHE CISSWL VADCCPLCR  V   PP S+S
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPPPPSTS 115

[Close]

BLAST of Lsi11G002310 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S SSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Lsi11G002310 vs. NCBI nr
Match: KAG7030453.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-54
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+S SSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Lsi11G002310 vs. NCBI nr
Match: KAG6599476.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-54
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAA +V AETTRNL+AAY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL++GQPP+S SSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Lsi11G002310 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAA +V AETTRNL+ AY IEFLFDLDMVLSGADDFGCCQIS SDS+VADLPTVV D+CA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S SSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Lsi11G002310 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 101/118 (85.59%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MAAAAVMAETTRNLSAAYQIEFLFDLDMVLSGADDFGCCQISTSDSVVADLPTVVVDLCA 60
           MAAAAVM E TRNL A Y IEFLFDLDMVLSGADDFGCCQIS +DS+VADLP VV D+CA
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGCCQISATDSLVADLPIVVADVCA 60

Query: 61  VCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSSSTLIRR 119
           VCLEDF PDE GKQIPCGHVYHESCISSWLTVADCCPLCRC VAGQPPD   STLIRR
Sbjct: 61  VCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAGQPPD---STLIRR 115

[Close]

BLAST of Lsi11G002310 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 47  VVADLPTVVVDLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           ++ D   V   +CA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Lsi11G002310 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-10
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 44  SDSVVADLPTVVV---------DLCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVAD 103
           S S +  LPTV V         + CAVC+++F      KQ+PC HV+H+ C+  WL + +
Sbjct: 192 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 251

Query: 104 CCPLCRCLVAGQPPD 110
            CP+CR  +    PD
Sbjct: 252 SCPVCRFELPTDDPD 266

[Close]

BLAST of Lsi11G002310 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-10
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 58  LCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           LCAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of Lsi11G002310 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           CA+C EDF   E  +++PC H+YH  CI  WLT  + CPLCR
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCR 137

[Close]

BLAST of Lsi11G002310 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 0


Query: 59  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSSS 113
           C+VCLEDF P E     PC H++HE CI  WL     CP+CR ++       SS
Sbjct: 144 CSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVILKPTKQDSS 197

The following BLAST results are available for this feature:

BLAST of Lsi11G002310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VHI7	4.0e-09	42.31	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
Q9D0C1	5.2e-09	40.00	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]
Q9Y4L5	6.8e-09	38.67	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q8LPN7	6.8e-09	37.33	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
P0CH30	1.2e-08	43.14	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]

BLAST of Lsi11G002310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G511	1.9e-54	87.29	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LKR7	1.6e-48	82.20	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A5A7V2P4	3.2e-46	80.67	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	3.2e-46	80.67	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A6J1DM93	5.7e-43	75.65	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Lsi11G002310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946863.1	3.9e-54	87.29	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
KAG7030453.1	8.7e-54	86.44	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599476.1	8.7e-54	86.44	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_023545409.1	1.1e-53	86.44	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038877422.1	1.5e-50	85.59	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]

BLAST of Lsi11G002310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	9.7e-11	44.44	RING/U-box superfamily protein	[more]
AT3G19950.1	4.8e-10	37.33	RING/U-box superfamily protein	[more]
AT3G60080.1	4.8e-10	53.49	RING/U-box superfamily protein	[more]
AT2G44330.1	8.2e-10	52.38	RING/U-box superfamily protein	[more]
AT3G58720.1	2.4e-09	44.44	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 3.6E-7 score: 39.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 5.2E-11 score: 42.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..114 e-value: 3.0E-16 score: 60.3
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 20..103
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 20..103
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002310.1	Lsi11G002310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity