Lsi11G002300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	E3 ubiquitin-protein ligase RNF181-like
Location	chr11: 2306923 .. 2307291 (+)
RNA-Seq Expression	Lsi11G002300
Synteny	Lsi11G002300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTGTCTTGTCTGAAACAACAACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTTGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACAATGAAACCGTTGTAGCACCACCACCCGTGGTGGTCGTTGACTTGCCAACGGTGGCCGTCGACGACGTATGTGCGGTTTGCATGGAGGATTTCCTGCCGGAGGAAGGAGGTAAACAGATCCCCTGTGGCCATGTGTACCATCAATCTTGTATATCCTCTTGGCTCTCCGTCGGCGACTCTTGCCCTCTTTGCCGCCGTCATATCTCCTCCGGCGACAGAAAGGAGGCACCTAAAACTGTACAAGTTTAG

mRNA sequence

ATGGCCACTGTCTTGTCTGAAACAACAACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTTGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACAATGAAACCGTTGTAGCACCACCACCCGTGGTGGTCGTTGACTTGCCAACGGTGGCCGTCGACGACGTATGTGCGGTTTGCATGGAGGATTTCCTGCCGGAGGAAGGAGGTAAACAGATCCCCTGTGGCCATGTGTACCATCAATCTTGTATATCCTCTTGGCTCTCCGTCGGCGACTCTTGCCCTCTTTGCCGCCGTCATATCTCCTCCGGCGACAGAAAGGAGGCACCTAAAACTGTACAAGTTTAG

Coding sequence (CDS)

ATGGCCACTGTCTTGTCTGAAACAACAACATCAGCTAATTATGCAGCAAGTTACATCATGGACATTGAATCAATGTTTGATCTCGACACGGTCCTCACCGGAGCCGATGACTTCTATTACAATGAAACCGTTGTAGCACCACCACCCGTGGTGGTCGTTGACTTGCCAACGGTGGCCGTCGACGACGTATGTGCGGTTTGCATGGAGGATTTCCTGCCGGAGGAAGGAGGTAAACAGATCCCCTGTGGCCATGTGTACCATCAATCTTGTATATCCTCTTGGCTCTCCGTCGGCGACTCTTGCCCTCTTTGCCGCCGTCATATCTCCTCCGGCGACAGAAAGGAGGCACCTAAAACTGTACAAGTTTAG

Protein sequence

MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTVQV

Homology

[Close]

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 47  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLS 106
           PPP     +  LPTV V          C VC ED+  EE  +Q+PC H +H SCI  WL 
Sbjct: 201 PPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLE 260

Query: 107 VGDSCPLCRRHISSGD 113
           + D+CP+CR+ ++  D
Sbjct: 261 LHDTCPVCRKSLNGED 276

[Close]

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 47  PPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLS 106
           PPP     +  LPTV V          C VC ED+  EE  +Q+PC H +H SCI  WL 
Sbjct: 202 PPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE 261

Query: 107 VGDSCPLCRRHISSGD 113
           + D+CP+CR+ ++  D
Sbjct: 262 LHDTCPVCRKSLNGED 277

[Close]

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 28  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGG 87
           LDT++T   + + N     PPP     +  LPTV V +        C VC ED+   E  
Sbjct: 188 LDTIITQLLNQFEN---TGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESV 247

Query: 88  KQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP 118
           +Q+PC H++H SCI  WL   DSCP+CR+ ++  +    P
Sbjct: 248 RQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 284

[Close]

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot
Match: Q6IRP0 (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-10
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 28  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGG 87
           LDT++T   + + N     PPP     +  LPT+ + +        C VC ED+   E  
Sbjct: 185 LDTIITQLLNQFEN---TGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESV 244

Query: 88  KQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP 118
           +Q+PC H++H  CI  WL   D+CP+CR+ +S  +    P
Sbjct: 245 RQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281

[Close]

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot
Match: Q6DIP3 (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-10
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 28  LDTVLTGADDFYYNETVVAPPPV---VVVDLPTVAVDD-------VCAVCMEDFLPEEGG 87
           LDT++T   + + N     PPP     +  LPT+ + +        C VC ED+   E  
Sbjct: 184 LDTIITQLLNQFEN---TGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESV 243

Query: 88  KQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAP 118
           +Q+PC H++H  CI  WL   D+CP+CR+ +S  +    P
Sbjct: 244 RQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280

[Close]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL
Match: A0A5A7V793 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00900 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 97/113 (85.84%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 10  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCME 69
           TSAN+AA YIMDIESMFDLDTVL+GADDFYY  T VAPPPVVV DLPTVA DD CAVCME
Sbjct: 3   TSANHAARYIMDIESMFDLDTVLSGADDFYYFHTAVAPPPVVVADLPTVATDDACAVCME 62

Query: 70  DFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTVQV 123
           DFLP+EGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI+ GD+ E  KTVQV
Sbjct: 63  DFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQV 115

[Close]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL
Match: A0A0A0LEZ1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 10  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCM 69
           TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCM
Sbjct: 3   TSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCM 62

Query: 70  EDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTVQV 123
           EDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI+ GD+ E  KTVQV
Sbjct: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL
Match: A0A6J1HNM2 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465331 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.5e-42
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVA-PPPVVVVDLPTVA 60
           MA VL E T SA +AASYIMD+ESMFDLDTVLTGADD+Y ++ ++  PP VVV DLPTV 
Sbjct: 1   MAAVLPEATRSA-FAASYIMDLESMFDLDTVLTGADDYYNDQMIITEPPSVVVSDLPTVV 60

Query: 61  VDDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKT 120
            DDVCAVCME+F  +EGGKQIPCGHVYHQSCISSWLSVGD CPLCR H+SS ++ E  K 
Sbjct: 61  TDDVCAVCMEEFRADEGGKQIPCGHVYHQSCISSWLSVGDCCPLCRCHVSSDNKLETTKP 120

Query: 121 VQV 123
           VQV
Sbjct: 121 VQV 122

[Close]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL
Match: A0A6J1FDN7 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111444430 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.5e-41
Identity = 87/123 (70.73%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAV 60
           MA VL E T SA +AA YIMD+ESMFDLDTVLTGADD+Y ++ +  PP VVV DLPTV  
Sbjct: 1   MAAVLPEATRSA-FAARYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT 60

Query: 61  DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSV-GDSCPLCRRHISSGDRKEAPKT 120
           DDVCAVCME+F  +EGGKQIPCGHVYHQ+CISSWLSV GD CPLCR H+SS ++ E  K 
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKSETAKP 120

Query: 121 VQV 123
           VQV
Sbjct: 121 VQV 122

[Close]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 67/122 (54.92%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 1   MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAV 60
           MA V     T+ N AA+Y   IE +FDLD VL+GADDF   +  ++    +V DLPTV V
Sbjct: 1   MAAVSVSAETTRNLAAAY--PIEFLFDLDMVLSGADDFGCCQ--ISASDSLVADLPTV-V 60

Query: 61  DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTV 120
            DVCAVC+EDF P+E GKQIPCGHVYH+SCISSWL+V + CPLCR  I +G   E+P + 
Sbjct: 61  ADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI-AGQPPESPSST 116

Query: 121 QV 123
            +
Sbjct: 121 LI 116

[Close]

BLAST of Lsi11G002300 vs. NCBI nr
Match: XP_038877426.1 (E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAV 60
           MATVL ETT++  YAASYIMDIESMFDLDTVLTGADDFYYN+TVVAPPPVVV DLPTVA 
Sbjct: 1   MATVLPETTSA--YAASYIMDIESMFDLDTVLTGADDFYYNKTVVAPPPVVVADLPTVAG 60

Query: 61  DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTV 120
            DVCAVC+EDFLP+E GKQIPCGHVYHQSC+SSWLSVGDSCPLCRRHI+S +  EAPKT 
Sbjct: 61  KDVCAVCIEDFLPDESGKQIPCGHVYHQSCLSSWLSVGDSCPLCRRHIASDEEMEAPKTE 120

Query: 121 QV 123
            V
Sbjct: 121 TV 120

[Close]

BLAST of Lsi11G002300 vs. NCBI nr
Match: KAA0061529.1 (RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 97/113 (85.84%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 10  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAVDDVCAVCME 69
           TSAN+AA YIMDIESMFDLDTVL+GADDFYY  T VAPPPVVV DLPTVA DD CAVCME
Sbjct: 3   TSANHAARYIMDIESMFDLDTVLSGADDFYYFHTAVAPPPVVVADLPTVATDDACAVCME 62

Query: 70  DFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTVQV 123
           DFLP+EGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHI+ GD+ E  KTVQV
Sbjct: 63  DFLPDEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHIAPGDKTETSKTVQV 115

[Close]

BLAST of Lsi11G002300 vs. NCBI nr
Match: XP_011650093.1 (E3 ubiquitin-protein ligase RNF115 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.3e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 10  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCM 69
           TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCM
Sbjct: 3   TSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCM 62

Query: 70  EDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTVQV 123
           EDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI+ GD+ E  KTVQV
Sbjct: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKTVQV 116

[Close]

BLAST of Lsi11G002300 vs. NCBI nr
Match: KAE8651508.1 (hypothetical protein Csa_019333 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 10  TSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTV-AVDDVCAVCM 69
           TSANYAASYIMDIESMFDLDTVLTGADDFYY  TVVAPPPV+V +LPTV A DDVCAVCM
Sbjct: 3   TSANYAASYIMDIESMFDLDTVLTGADDFYYFHTVVAPPPVMVAELPTVAAADDVCAVCM 62

Query: 70  EDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKT 120
           EDFLP+EGGKQIPCGHVYHQSC+SSWLS+ DSCPLCR HI+ GD+ E  KT
Sbjct: 63  EDFLPDEGGKQIPCGHVYHQSCLSSWLSIRDSCPLCRCHIAPGDKTETSKT 113

[Close]

BLAST of Lsi11G002300 vs. NCBI nr
Match: XP_023537996.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MATVLSETTTSANYAASYIMDIESMFDLDTVLTGADDFYYNETVVAPPPVVVVDLPTVAV 60
           MA VL E T SA +AASYIMD+ESMFDLDTVLTGADD+Y ++ +  PP VVV DLPTV  
Sbjct: 1   MAAVLPEATRSA-FAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVT 60

Query: 61  DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGDRKEAPKTV 120
           DDVCAVCME+F  +EGGKQIPCGHVYHQ+CISSWLSVGD CPLCR H+SS ++ E  K V
Sbjct: 61  DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGDCCPLCRCHVSSDNKSETAKPV 120

Query: 121 QV 123
           QV
Sbjct: 121 QV 121

[Close]

BLAST of Lsi11G002300 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 36  DDFYYN----------ETVVAPPP----------VVVVDLPTVAVDDVCAVCMEDFLPEE 95
           DD  YN             + PPP           V++    +  + VCA+C E+F   E
Sbjct: 90  DDLVYNTDEEFADVMPSVQIGPPPASQSAIEAVRTVIITDEDLVKEKVCAICKEEFEVGE 149

Query: 96  GGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSG 112
            GK++ C H+YH SCI SWL++ ++CP+CR  ++ G
Sbjct: 150 EGKELKCLHLYHSSCIVSWLNIHNTCPICRFEVNLG 185

[Close]

BLAST of Lsi11G002300 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-11
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 63  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCR 106
           +CAVC EDF+  E  +++PC H+YH  CI  WLS  +SCPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of Lsi11G002300 vs. TAIR 10
Match: AT2G39720.1 (RING-H2 finger C2A )

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 26/75 (34.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 41  NETVVAPPPVVVVDLPTVAVDDV---CAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSV 100
           +++ +   P++ +D PT  + D    CAVC E+F+ +   +++PC H+YH  CI  WL++
Sbjct: 176 SKSAIEALPLIEID-PTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAI 235

Query: 101 GDSCPLCRRHISSGD 113
            +SCP+CR  + + D
Sbjct: 236 RNSCPVCRHELPAED 249

[Close]

BLAST of Lsi11G002300 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 13  NYAASYIMD--IESMFDLDTVLTGADDFYYNETVVAPPPV--VVVDLPTVAV-------- 72
           N++  Y  D  +  MFD +T + G            PP    V+ DLP V +        
Sbjct: 283 NHSGHYDADAILGQMFDDETGIRG-----------NPPAAKSVIQDLPVVELAVEELDKG 342

Query: 73  DDVCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD 113
           ++VCAVC ++ L EE  +++PC H YH  CI  WL + ++CP+CR  + + D
Sbjct: 343 NNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDD 383

[Close]

BLAST of Lsi11G002300 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 63  VCAVCMEDFLPEEGGKQIPCGHVYHQSCISSWLSVGDSCPLCRRHISSGD------RKEA 121
           VCAVC +  +  E GK++PCGH YH  CI  WL   +SCP+CR  + + D      RK+ 
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315

The following BLAST results are available for this feature:

BLAST of Lsi11G002300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y4L5	1.3e-10	40.79	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]
Q9D0C1	1.3e-10	40.79	E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1	[more]
Q91YL2	2.2e-10	36.00	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]
Q6IRP0	8.3e-10	33.00	E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 ...	[more]
Q6DIP3	8.3e-10	33.00	E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 ...	[more]

BLAST of Lsi11G002300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V793	2.2e-50	85.84	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0LEZ1	1.6e-48	84.21	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 P...	[more]
A0A6J1HNM2	6.5e-42	72.36	E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111465...	[more]
A0A6J1FDN7	5.5e-41	70.73	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1G511	2.8e-24	54.92	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Lsi11G002300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877426.1	1.6e-50	83.61	E3 ubiquitin-protein ligase RNF126-like [Benincasa hispida]	[more]
KAA0061529.1	4.6e-50	85.84	RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa]	[more]
XP_011650093.1	3.3e-48	84.21	E3 ubiquitin-protein ligase RNF115 [Cucumis sativus]	[more]
KAE8651508.1	1.4e-46	83.78	hypothetical protein Csa_019333 [Cucumis sativus]	[more]
XP_023537996.1	1.2e-42	72.13	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi11G002300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	2.6e-11	33.33	RING/U-box superfamily protein	[more]
AT3G60080.1	3.5e-11	55.81	RING/U-box superfamily protein	[more]
AT2G39720.1	7.7e-11	34.67	RING-H2 finger C2A	[more]
AT3G02340.1	7.7e-11	33.04	RING/U-box superfamily protein	[more]
AT5G64920.1	7.7e-11	43.75	COP1-interacting protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 64..104 e-value: 2.1E-8 score: 43.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 63..105 e-value: 4.4E-12 score: 46.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 64..105 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 56..121 e-value: 3.9E-19 score: 69.6
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 22..109
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 22..109
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 63..105 e-value: 2.01469E-16 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002300.1	Lsi11G002300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding