Lsi11G002240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G002240
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 2280509 .. 2280928 (+)
RNA-Seq ExpressionLsi11G002240
SyntenyLsi11G002240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCAAGAACAAACCCACATCAAGCCCTGCTTTGTGAGCGTAAATCATCCCTTCCACCAGTCCCACCATTGTCGAAGCTATTGTGATCTGATTCGCCAGCTTCGCAAATTGCCCTTTCCCACTTTCTCCCATGTAATTCACTTTCCCTAGTAAGGAAAATAACGGGCTCAATCGCCGGACTTCGCCTTCATCGCCGCCGGCGAAGATTGCCAGAGAGGCATTCTTGGCGCCGCGATCGCCGCCTGATACTGGAGCGTCGATTGCCCCACAGCCCTTGGCGGTTGCCGCGGCGGCGATTTCAGAGGCGAGTGAGGGTTCGGAAGTGGTCATGTCGACGAGGACGCCGCCGGGGCGAAGGCCGGCGAGTGCGCCGGAGGTGGGATTGAGGAGGACGGAGCGGACGTCGGAGGGGTAA

mRNA sequence

ATGGCTAAGGAAAATAACGGGCTCAATCGCCGGACTTCGCCTTCATCGCCGCCGGCGAAGATTGCCAGAGAGGCATTCTTGGCGCCGCGATCGCCGCCTGATACTGGAGCGTCGATTGCCCCACAGCCCTTGGCGGTTGCCGCGGCGGCGATTTCAGAGGCGAGTGAGGGTTCGGAAGTGGTCATGTCGACGAGGACGCCGCCGGGGCGAAGGCCGGCGAGTGCGCCGGAGGTGGGATTGAGGAGGACGGAGCGGACGTCGGAGGGGTAA

Coding sequence (CDS)

ATGGCTAAGGAAAATAACGGGCTCAATCGCCGGACTTCGCCTTCATCGCCGCCGGCGAAGATTGCCAGAGAGGCATTCTTGGCGCCGCGATCGCCGCCTGATACTGGAGCGTCGATTGCCCCACAGCCCTTGGCGGTTGCCGCGGCGGCGATTTCAGAGGCGAGTGAGGGTTCGGAAGTGGTCATGTCGACGAGGACGCCGCCGGGGCGAAGGCCGGCGAGTGCGCCGGAGGTGGGATTGAGGAGGACGGAGCGGACGTCGGAGGGGTAA

Protein sequence

MAKENNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTRTPPGRRPASAPEVGLRRTERTSEG
Homology
BLAST of Lsi11G002240 vs. ExPASy TrEMBL
Match: A0A0A9EAU2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 6  NGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTR 65
          +G  R T+ +SPPAK+ R A  APRSPP+TGAS A  P A AAAAIS A EGSEVVMSTR
Sbjct: 11 SGARRVTTAASPPAKMERVALRAPRSPPETGASTAAHPAAAAAAAISAAREGSEVVMSTR 70

Query: 66 TPPGRRPASAPEVGLRRTERTSEG 90
          TPPG RPA AP  G R  ERTSEG
Sbjct: 71 TPPGARPARAPVEGSRAVERTSEG 94

BLAST of Lsi11G002240 vs. ExPASy TrEMBL
Match: A0A0A9GN46 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 6  NGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTR 65
          +G  R T+ +SPPAK+ R A  APRSPP+TGAS A QP A A AAIS A  GSEVV+STR
Sbjct: 11 SGARRVTTAASPPAKMERLALRAPRSPPETGASTAAQPAAAATAAISAARVGSEVVISTR 70

Query: 66 TPPGRRPASAPEVGLRRTERTSEG 90
          TPPG RPA AP  G R  ERTSEG
Sbjct: 71 TPPGARPARAPVEGSRAVERTSEG 94

BLAST of Lsi11G002240 vs. ExPASy TrEMBL
Match: A0A0P0V844 (Os01g0742350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0742350 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15
Identity = 54/85 (63.53%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 5   NNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMST 64
           N G  R T+ +SPPAK+   A  APRSPP+TGAS A Q LA AA+AIS A  GSEVVMST
Sbjct: 77  NRGARRATTAASPPAKMESVALRAPRSPPETGASTAAQLLAAAASAISAARVGSEVVMST 136

Query: 65  RTPPGRRPASAPEVGLRRTERTSEG 90
             PPG RPA AP  G R  ERTSEG
Sbjct: 137 SNPPGARPARAPVEGSREVERTSEG 161

BLAST of Lsi11G002240 vs. ExPASy TrEMBL
Match: C7IY07 (Os01g0742350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0742350 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15
Identity = 54/85 (63.53%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 5   NNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMST 64
           N G  R T+ +SPPAK+   A  APRSPP+TGAS A Q LA AA+AIS A  GSEVVMST
Sbjct: 77  NRGARRATTAASPPAKMESVALRAPRSPPETGASTAAQLLAAAASAISAARVGSEVVMST 136

Query: 65  RTPPGRRPASAPEVGLRRTERTSEG 90
             PPG RPA AP  G R  ERTSEG
Sbjct: 137 SNPPGARPARAPVEGSREVERTSEG 161

BLAST of Lsi11G002240 vs. ExPASy TrEMBL
Match: A0A0A9JAG2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 53/84 (63.10%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 6   NGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTR 65
           +G  R T+ +SPP K+ R A  APRSPP+TGAS A QP   AA+AIS A  GSEVVMSTR
Sbjct: 78  SGARRVTTAASPPEKMERVALRAPRSPPETGASTAAQPAEAAASAISAARVGSEVVMSTR 137

Query: 66  TPPGRRPASAPEVGLRRTERTSEG 90
           TPPG RPA AP  G R  E TSEG
Sbjct: 138 TPPGARPARAPVEGSRAVEWTSEG 161

BLAST of Lsi11G002240 vs. NCBI nr
Match: CBI27998.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 56/76 (73.68%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 4  ENNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMS 63
          EN G  R T+ SSPPAKIAR AFLAPRSPP+TGAS   QPL  A  AIS ASEGSEVVMS
Sbjct: 14 ENKGFRRLTTDSSPPAKIARVAFLAPRSPPETGASTEKQPLEAAEEAISAASEGSEVVMS 73

Query: 64 TRTPPGRRPASAPEVG 80
          TRTPPGR P  APE G
Sbjct: 74 TRTPPGRSPERAPEEG 89

BLAST of Lsi11G002240 vs. NCBI nr
Match: KAF8091058.1 (hypothetical protein N665_0455s0016 [Sinapis alba])

HSP 1 Score: 93.6 bits (231), Expect = 9.3e-16
Identity = 58/86 (67.44%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 4  ENNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMS 63
          ENNG  R T  SSPPAKI    FLAPRSPP+TGAS   Q    AA  IS A EGS+VVMS
Sbjct: 9  ENNGSRRFTVVSSPPAKIESFPFLAPRSPPETGASTEKQFTEEAALDISSAREGSDVVMS 68

Query: 64 TRTPPGRRPASAPEVGLRRTERTSEG 90
          TRTPPG RP  APE G RRT RTSEG
Sbjct: 69 TRTPPGVRPDKAPEFGSRRTWRTSEG 94

BLAST of Lsi11G002240 vs. NCBI nr
Match: KAB8083453.1 (hypothetical protein EE612_005646 [Oryza sativa] >BAH91293.1 Os01g0742350 [Oryza sativa Japonica Group] >BAS74285.1 Os01g0742350 [Oryza sativa Japonica Group])

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 54/85 (63.53%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 5   NNGLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMST 64
           N G  R T+ +SPPAK+   A  APRSPP+TGAS A Q LA AA+AIS A  GSEVVMST
Sbjct: 77  NRGARRATTAASPPAKMESVALRAPRSPPETGASTAAQLLAAAASAISAARVGSEVVMST 136

Query: 65  RTPPGRRPASAPEVGLRRTERTSEG 90
             PPG RPA AP  G R  ERTSEG
Sbjct: 137 SNPPGARPARAPVEGSREVERTSEG 161

BLAST of Lsi11G002240 vs. NCBI nr
Match: KAF4390052.1 (hypothetical protein F8388_002994 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0

Query: 7   GLNRRTSPSSPPAKIAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTRT 66
           G NR T+ SSPPAKIAR  FLAPRSPPDTGASIA QPLA A   IS+A EGS+VV+STRT
Sbjct: 142 GFNRLTTDSSPPAKIARVPFLAPRSPPDTGASIAAQPLAAAEEEISDAREGSDVVISTRT 201

Query: 67  PPGRRPASAPEVG 80
           PP R       +G
Sbjct: 202 PPERGQRGRQRMG 214

BLAST of Lsi11G002240 vs. NCBI nr
Match: KAF1862290.1 (hypothetical protein Lal_00026816 [Lupinus albus])

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-09
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 21 IAREAFLAPRSPPDTGASIAPQPLAVAAAAISEASEGSEVVMSTRTPPGRRPASAPE 78
          +AR  FLAPRSPP+TGAS   Q  + AAAAIS ASEGS+VVMSTR PPGRRP  APE
Sbjct: 1  MARVPFLAPRSPPETGASTEWQFFSAAAAAISTASEGSDVVMSTRIPPGRRPERAPE 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9EAU23.1e-1767.86Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9GN465.9e-1665.48Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0P0V8445.0e-1563.53Os01g0742350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0742350 PE... [more]
C7IY075.0e-1563.53Os01g0742350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0742350 PE... [more]
A0A0A9JAG21.4e-1463.10Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
CBI27998.32.9e-1773.68unnamed protein product, partial [Vitis vinifera][more]
KAF8091058.19.3e-1667.44hypothetical protein N665_0455s0016 [Sinapis alba][more]
KAB8083453.11.0e-1463.53hypothetical protein EE612_005646 [Oryza sativa] >BAH91293.1 Os01g0742350 [Oryza... [more]
KAF4390052.13.3e-1367.12hypothetical protein F8388_002994 [Cannabis sativa][more]
KAF1862290.14.9e-0971.93hypothetical protein Lal_00026816 [Lupinus albus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G002240.1Lsi11G002240.1mRNA