Lsi11G001950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	1-aminocyclopropane-1-carboxylate oxidase 1
Location	chr11: 2013939 .. 2014748 (-)
RNA-Seq Expression	Lsi11G001950
Synteny	Lsi11G001950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTATATATACTCCATTATTTCACCATTCTTCTTCAATATCTTCACTTCCAAAGAGAAAAAAATGGCTATGAAGATCCCCACCGTTGATTTCAATCAACTCACTGGAGACTACAAGGCCAATACCCTGTCTATTCTTCATGAAGCTTGCCAAAATTGGGGCTTCTTTTTAGTAAGTTTTTTCCTTTACAACTATTTACATTTTTTTTGGTCAATTTCGAGCTCGAATCAGGGGTAATTTTGTCTTGATTTGCATATATATTTCACTACCGTTCTAACTTTTTAAGAACAATCTTTCTCTCGAATAAATGATTACGAGATCAATTTTCGTTTTTTGGAAGTGTAATATTCAATATTTTATTATGAAAAACCTAATGACTCAAAAACTTTAGATAAATCCAGTTCAAATGGGTGGTTTTGGGATTTGGATGTTGTGGAATTATGGAATAAGGTTGTAGTTTGTTTGGTTTTTATGGTTTTTTTTTTTTTATAGAAATGACTATAAATAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCACTGTCTATCAATGATAGATCGCGATAGAATTCTATCGCTTGAGCGACAGACTTCTATTGATATCTATCACCCAAGTGATAGAATTCTGTTGTAGTCTATAATTTTTCTATATTTGTAAATAGTTTCACTCATTTATATATACATATTTGTTGGGAATTGTTAATGGTTAATTTGAGAGGGTATTGGATTGTGCAGGTAGAGAATCATGGGATTGAAGATAGGGTATTGGAGAAGGTGAAGTTATTGGTAAACGAACATTATGA

mRNA sequence

GCCTATATATACTCCATTATTTCACCATTCTTCTTCAATATCTTCACTTCCAAAGAGAAAAAAATGGCTATGAAGATCCCCACCGTTGATTTCAATCAACTCACTGGAGACTACAAGGCCAATACCCTGTCTATTCTTCATGAAGCTTGCCAAAATTGGGGCTTCTTTTTAGGTATTGGAGAAGGTGAAGTTATTGGTAAACGAACATTATGA

Coding sequence (CDS)

GCCTATATATACTCCATTATTTCACCATTCTTCTTCAATATCTTCACTTCCAAAGAGAAAAAAATGGCTATGAAGATCCCCACCGTTGATTTCAATCAACTCACTGGAGACTACAAGGCCAATACCCTGTCTATTCTTCATGAAGCTTGCCAAAATTGGGGCTTCTTTTTAGGTATTGGAGAAGGTGAAGTTATTGGTAAACGAACATTATGA

Protein sequence

AYIYSIISPFFFNIFTSKEKKMAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEGEVIGKRTL

Homology

[Close]

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot
Match: Q9ZUN4 (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=ACO1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 20 KKMAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          K+  M+IP +DF +L G+ ++ T+S+L  AC  WGFF+
Sbjct: 5  KEREMEIPVIDFAELDGEKRSKTMSLLDHACDKWGFFM 42

[Close]

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot
Match: Q41931 (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Arabidopsis thaliana OX=3702 GN=ACO2 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 17/39 (43.59%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          MK P VD ++L G+ +  T+++++EAC+NWGFF  +  G
Sbjct: 5  MKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHG 43

[Close]

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot
Match: O65378 (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Arabidopsis thaliana OX=3702 GN=At1g12010 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-04
Identity = 16/42 (38.10%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 21 KMAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          +M +K P +D ++L G+ +  T++++ +ACQNWGFF  +  G
Sbjct: 2  EMNIKFPVIDLSKLNGEERDQTMALIDDACQNWGFFELVNHG 43

[Close]

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot
Match: Q09052 (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea OX=3707 GN=ACO PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.1e-04
Identity = 15/39 (38.46%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          +K P VD ++L G+ +  T++++++AC+NWGFF  +  G
Sbjct: 5  IKFPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHG 43

[Close]

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot
Match: P05116 (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum OX=4081 GN=ACO1 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-04
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 27 PTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          P ++  +L GD +ANT+ ++ +AC+NWGFF  +  G
Sbjct: 5  PIINLEKLNGDERANTMEMIKDACENWGFFELVNHG 40

[Close]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL
Match: A0A5D3CHV3 (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00870 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D K NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNKGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL
Match: A0A1S3CB09 (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo OX=3656 GN=LOC103498449 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D K NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNKGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL
Match: A0A5A7V755 (ACC oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00590 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D + NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNEGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL
Match: Q43419 (ACC oxidase OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-08
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D + NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNEGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL
Match: A0A6J1CCP2 (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Momordica charantia OX=3673 GN=LOC111010009 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          M+IPT+DFNQL GD +A TLS+LHEACQNWGFF+
Sbjct: 1  MEIPTIDFNQLNGDNRAKTLSLLHEACQNWGFFM 34

[Close]

BLAST of Lsi11G001950 vs. NCBI nr
Match: XP_038890644.1 (1-aminocyclopropane-1-carboxylate oxidase 1 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 22 MAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MAMKIPT+DFNQLTGD KAN LS+LHEACQNWGFFL
Sbjct: 1  MAMKIPTIDFNQLTGDNKANALSVLHEACQNWGFFL 36

[Close]

BLAST of Lsi11G001950 vs. NCBI nr
Match: XP_008459274.1 (PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 1 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D K NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNKGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. NCBI nr
Match: TYK10774.1 (1-aminocyclopropane-1-carboxylate oxidase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D K NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNKGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. NCBI nr
Match: KAA0061499.1 (ACC oxidase [Cucumis melo var. makuwa] >CAA64798.1 ACC oxidase [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          MKIPT+DFNQL  D + NTLSILHEACQNWGFFL
Sbjct: 1  MKIPTIDFNQLNEDNEGNTLSILHEACQNWGFFL 34

[Close]

BLAST of Lsi11G001950 vs. NCBI nr
Match: XP_022138962.1 (1-aminocyclopropane-1-carboxylate oxidase 1 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          M+IPT+DFNQL GD +A TLS+LHEACQNWGFF+
Sbjct: 1  MEIPTIDFNQLNGDNRAKTLSLLHEACQNWGFFM 34

[Close]

BLAST of Lsi11G001950 vs. TAIR 10
Match: AT1G62380.1 (ACC oxidase 2 )

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 17/39 (43.59%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          MK P VD ++L G+ +  T+++++EAC+NWGFF  +  G
Sbjct: 5  MKFPVVDLSKLNGEERDQTMALINEACENWGFFEIVNHG 43

[Close]

BLAST of Lsi11G001950 vs. TAIR 10
Match: AT2G19590.1 (ACC oxidase 1 )

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 20 KKMAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFL 58
          K+  M+IP +DF +L G+ ++ T+S+L  AC  WGFF+
Sbjct: 5  KEREMEIPVIDFAELDGEKRSKTMSLLDHACDKWGFFM 42

[Close]

BLAST of Lsi11G001950 vs. TAIR 10
Match: AT1G12010.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.3e-06
Identity = 16/42 (38.10%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 21 KMAMKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          +M +K P +D ++L G+ +  T++++ +ACQNWGFF  +  G
Sbjct: 2  EMNIKFPVIDLSKLNGEERDQTMALIDDACQNWGFFELVNHG 43

[Close]

BLAST of Lsi11G001950 vs. TAIR 10
Match: AT1G77330.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05
Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 24 MKIPTVDFNQLTGDYKANTLSILHEACQNWGFFLGIGEG 63
          M IP +DF++L G+ +  TLS +  AC+ WGFF  +  G
Sbjct: 1  MAIPVIDFSKLNGEEREKTLSEIARACEEWGFFQLVNHG 39

The following BLAST results are available for this feature:

BLAST of Lsi11G001950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUN4	6.0e-05	44.74	1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q41931	6.0e-05	43.59	1-aminocyclopropane-1-carboxylate oxidase 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O65378	1.0e-04	38.10	1-aminocyclopropane-1-carboxylate oxidase 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q09052	5.1e-04	38.46	1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea OX=3707 GN=ACO PE=2...	[more]
P05116	6.7e-04	41.67	1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum OX=4081 GN=A...	[more]

BLAST of Lsi11G001950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHV3	2.7e-08	85.29	1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CB09	2.7e-08	85.29	1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo OX=3656 GN=LOC103498...	[more]
A0A5A7V755	7.9e-08	82.35	ACC oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00590 PE=...	[more]
Q43419	7.9e-08	82.35	ACC oxidase OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
A0A6J1CCP2	1.0e-07	76.47	1-aminocyclopropane-1-carboxylate oxidase 1 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Lsi11G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890644.1	2.7e-10	88.89	1-aminocyclopropane-1-carboxylate oxidase 1 [Benincasa hispida]	[more]
XP_008459274.1	5.6e-08	85.29	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 1 [Cucumis melo]	[more]
TYK10774.1	5.6e-08	85.29	1-aminocyclopropane-1-carboxylate oxidase 1 [Cucumis melo var. makuwa]	[more]
KAA0061499.1	1.6e-07	82.35	ACC oxidase [Cucumis melo var. makuwa] >CAA64798.1 ACC oxidase [Cucumis melo]	[more]
XP_022138962.1	2.1e-07	76.47	1-aminocyclopropane-1-carboxylate oxidase 1 [Momordica charantia]	[more]

BLAST of Lsi11G001950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62380.1	4.3e-06	43.59	ACC oxidase 2	[more]
AT2G19590.1	4.3e-06	44.74	ACC oxidase 1	[more]
AT1G12010.1	7.3e-06	38.10	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[more]
AT1G77330.1	4.7e-05	43.59	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027443	Isopenicillin N synthase-like superfamily	GENE3D	2.60.120.330		coord: 7..65 e-value: 5.0E-6 score: 27.9
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 17..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001950.1	Lsi11G001950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071398	cellular response to fatty acid
biological_process	GO:0071732	cellular response to nitric oxide
biological_process	GO:0051365	cellular response to potassium ion starvation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity