Lsi11G001710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PHD finger protein ALFIN-LIKE 4-like
Location	chr11: 1805696 .. 1809496 (+)
RNA-Seq Expression	Lsi11G001710
Synteny	Lsi11G001710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGTATTGCGGACGCTATATGCATGGCAGAACATAGGACCATGCACCGGTTGTCTAGTGAGAAAAATGGGGAGGTGGAGGAAGACTAGACTAGACCAGAGTCTCCATGTTAGTTATTTATGCTTTGTGATTTTAGCTTGGAGTGGGCAGAAAGACCGCCATTAATGTACTTCAAAATATTGGCACGATGCCCTTCAATAATTTGCTTTTGTTTAAAACAAACCATATTTTAGAAGCAGATGACAATGGATTAGACCAAAATCTCCCCCTGGTTTGGGCTGCATGGATTTGTTTGAAATAACTAAATGGTGAAGGGTATTTTTGCAATTCCGATGAATTTAGACAATGTTGTACCTTATTTGGAATTTCATGTTCTGTTCAACTGATCGTTGTAAAACCAGCGTTAATTGGCTGGCGTGGCTGCGACGGTTGTATGCCGTTGAAAATTTTTTAGTATTCTTGTAGTACTATATTCATTGTGTTTACACATGTTAGTGAGTTCTACTTTATTGATCGTGTTGACGTGACATATAATAAATGAAAGTAGTATGGATTTTTTTTATACTATTGTATTATTGGAAGTTGTACCTGTTAAAGTATGGATTTTTTTTTATACTATTGTATTATAAGAAGTTGTACCTGTTAAATCATGACATGTGTATGAAAAGTACGAGATATTGCCATGTAATCCTTTGGTCAGAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTGTAGAAAGCTAAATAAAATAAAATGAAATTATTTTATTATTTTATTCGATTTATTTAATTTAATTTTATTAATATTTATTTTTGTTCCCTCTCCTTTTAAAGTGAAAGAGCAGCCCAATCTTCAAAAGCTCAGACTGTAAGAACACTCTCCTTCTGCTACTGAAATTTTTTGGGCGTTTGATTTTCATTTCTCTGTGCCTTTCTTCTCCATAGGTAACTAACCATTGTCAGAAGTGGGCTTTCTTGTTCTTCTCATTGCATTTTCTTCTGATGCTTTTCATTCTCCATTTCTTCTTTCTTCCTTTTTTCGATTTCCTTAACCATTTCTTGCTGTTTGATTCTTCCTTTTCCGAATTCTAGCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGGTCTGAGCTCCCTTCTCTGTATTCTTTTTCTTTTACATAACTTGTGGGTACTTGCGATTGGGATTTGATAGTCAACACTATACTTTATGTGTGTTGATTAATATTCTTTTGGAGGAAATCTTCTCTGTGGGGGTATTCTCTTGATTCATGAATTTTTGGTCATGGAAAAAATAAAATAACACAATAACTACTTGTTGCTATTGATAGTGAGAGCCTCTAACTTGGTGAGATTTCAAAGAGCTATTTGCTTTACAGTTTACTCATACACATTACAGCTAGAATCTGTTGCGTTTTTATTAGTTAATTTTTTGGCAATTTGTTTAAATTCATTGTGAAATGTAGATTACCTGAAATTTTGTTTGAAATCACCAACTGTAGTTTGCAAACTAGAATGTAGTAAGTAATTGTTACTGGGATTTTAGTCACTAATTGTTTCTTGAGTATGAAGTTGGTGACAAAAATACGAGCGTAGGCTTTTCTCCATACTTCCTGTTCTAGGTCACTCAAAGAATAAATGCGGGTTATATAGGGGACCCAATTCCTTCTAATATTTGAATAATGAAATATTTGCTTTTGTAATGGAACCATTTACTTTTGTAATAGCACTCAAGTACTCTGTAGCTATTTCTGCTTTTACGGACAGTGGTGAGCTTTTTCAACTATTTACTCAACTGTTACAAATTTCAGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTGGCCTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGTGTATGACTAAGGTTTTGAAAATACAAAAATTGTCTCTGATATTTAAAAAGGCAAAAAGAGAAACAAAATGATTAGATGTGCAGAGCACTATTCTGATGTCTGGCATATCTCTTTATTAATTGTGTTTCCACCTGTTCTTTGAAGATTTCACAATATGGAGACTGACTGATGGGCCATTATTCTTATGAGTAAAAGCGTTTTATTTTAACTGATAAATTTGAGTTAAAAAAGAAAAAGAAAACTAGAAAAATAAAGCCCTTGTCTCTCTTACAAAAAGATCAAAGAAAAGTAGGTGGCCTGGGAAAATAGACACAAATTCATGTATTTTATTTCTTGAATCGTGATCATTTTCTCTTGTTTGTGTCAGTATTTGCTAATTTTTGTAGAATTAATTCATGATCCAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGGTAAATAGAATTTTCAGTATCTTATTTCATTTTCGTTTGTTGAACAATGATCTGTCTTAATTGGGTTGATTGATGAAGAACTTTGGACCTTAGGGCTAGCAATTGATATAATCAGCTATTTTTTTTACCCTATGCAATTGTTCTCTCTTCAAGAACAGAAAACAAAATATAATAGAAATTTCCAAAGGAAAAGGAGTTGAGAAAATATTTGGACCTGCTTCTATATCACCATGCAGTAAATATTAATATTAGAAGCAAATTATTGATGTAGACATTGTTCCTTTTGCAACAAAGTTATTGAATTTCAATACATTACACGTGATGGAATTTATCTGCAGCTCTATATGTCCAGTCGGTTTTTGTTCTATATATGATCTTTTGACCATATAATATTTGTTTAACTCTTTTTTCAAAAACAAAATGAACATTATTAACAGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA

mRNA sequence

ATGGAGCACTTGGAGTGGGCAGAAAGACCGCCATTAATAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA

Coding sequence (CDS)

ATGGAGCACTTGGAGTGGGCAGAAAGACCGCCATTAATAACAAGTAATACATTTATTTACCGTCGTTTTGACTTCGGCGGCATTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTATGGATGTTGAAGAAATCCCAGGTCGGGCTCGGGCTCTTGCATGGTATCTTTGCCGCGCTATTGTCTTAAAAAGTGGGCTCTGGATTCCAGTAAATATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGGTCTTGTTCAATCTCCGTTTTCCTTTTCCTCCTCATCTATTTCTGGCTTTTCGTTTTCTAGTTTTGGGGTTTTCAATAGGTTTTCATGGCGCTGTACACTTCTCGTTAGCTTTTCTGCAGGGTGCCTTGTAATTTTACTCTTCTCTCTTGCCATCTTCTTGCAGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTCTATGGATTCCCTAATGAACAGTGGGAGGTTAATTTGCCTGGTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGATATCCCTTGTTGTCGTTCATAGTGATGCCTGGCTTCTTGCTGTACTTTCTTTCGCTTGCCATTGATGAACTAAATTTGCTGGCTGTTGCTGCTGCTTCGGCACCACAGTTACATGACACTACGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCTAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGAAGAGGAGCATGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA

Protein sequence

MEHLEWAERPPLITSNTFIYRRFDFGGISRHKIKFKNRFKSASQTARATSMDVEEIPGRARALAWYLCRAIVLKSGLWIPVNMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP

Homology

[Close]

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot
Match: O81488 (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-54
Identity = 148/328 (45.12%), Postives = 174/328 (53.05%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           M+ G AYNPRTVEEVFRDFKGRRAGMI+ALTT +                          
Sbjct: 1   MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDV-------------------------- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
                                        + F       ++              +C   
Sbjct: 61  -----------------------------QEFFRLCDPEKEN-------------LC--- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L    N+HW + L        +  P+L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLF M+NDLPTIFEVV G+ KKQGKDKS VSNNSSN+SK   K RG
Sbjct: 181 FFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK-RG 240

Query: 323 SES-SKLSKGLAKD----EDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFH 382
           SES +K SK   KD    E+EG++EE E+E GET CGACGE+YA+DEFWICCD+CE WFH
Sbjct: 241 SESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFH 254

Query: 383 GKCVKITPARAEHIKQYKCPSCSNKRAR 398
           GKCVKITPARAEHIKQYKCPSCSNKRAR
Sbjct: 301 GKCVKITPARAEHIKQYKCPSCSNKRAR 254

[Close]

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-49
Identity = 132/341 (38.71%), Postives = 168/341 (49.27%), Query Frame = 0


Query: 83  MDGGAA-YNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNR 142
           M+GG A Y+PRTVEEVFRDFKGRRAG+I+ALTT +                         
Sbjct: 1   MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDV------------------------- 60

Query: 143 FSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLV 202
                                         ++F       ++              +C  
Sbjct: 61  ------------------------------EDFFQQCDPEKQN-------------LC-- 120

Query: 203 RKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASA 262
              L  F N+ W + L        +  P L         + F    + E N L++ A  +
Sbjct: 121 ---LYGFPNEVWEVNLPAEEVPPELPEPALG--------INFARDGMQERNWLSLVAVHS 180

Query: 263 PQL---------------HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNK 322
                                 KRLF+MIN++PT++EVVTG+ +KQ K+    +N + N+
Sbjct: 181 DAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNR 240

Query: 323 SKMGPKGRGSESSKLSKGLAKDEDEGL---------DEEEEEHGETLCGACGENYASDEF 382
           SK   K RG ES       AKDE+EGL         DE+E+EHGETLCGACG+NYASDEF
Sbjct: 241 SKSNSKMRGLESKSSKTIHAKDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEF 260

Query: 383 WICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 399
           WICCD+CEKWFHG+CVKITPARAEHIK YKCP+CSNKRARP
Sbjct: 301 WICCDMCEKWFHGECVKITPARAEHIKHYKCPTCSNKRARP 260

[Close]

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.1e-45
Identity = 131/317 (41.32%), Postives = 168/317 (53.00%), Query Frame = 0


Query: 83  MDGGAA-YNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNR 142
           M+GGAA YNPRTVEEVF+DFKGRR  +++ALTT + +    +        +   +G+ N 
Sbjct: 1   MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQE---FYQQCDPEKENLCLYGLPNE 60

Query: 143 FSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLV 202
             W     V+  A  +   L   A+ +  +++ +S      K   S              
Sbjct: 61  -EWE----VNLPAEEVPPELPEPALGINFARDGLS-----EKEWLS-------------- 120

Query: 203 RKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASA 262
              L +  +  W L+              +SF     F  +                   
Sbjct: 121 ---LVAIHSDAWLLS--------------VSFYFGSRFSFH------------------- 180

Query: 263 PQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKL 322
               +  KRLF MIND+PTIFEVVTG  K   KDKS  +N + NKSK   K R SE    
Sbjct: 181 ---KEERKRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEGKSS 240

Query: 323 SKGLAKDEDEGLDE-EEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARA 382
                K+EDE +DE +E++HGETLCGACG++  +DEFWICCD+CEKWFHGKCVKITPARA
Sbjct: 241 KTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARA 249

Query: 383 EHIKQYKCPSCSNKRAR 398
           EHIKQYKCPSCSNKRAR
Sbjct: 301 EHIKQYKCPSCSNKRAR 249

[Close]

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot
Match: Q7F2Z1 (PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0887700 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.4e-42
Identity = 126/335 (37.61%), Postives = 156/335 (46.57%), Query Frame = 0


Query: 85  GGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRFSW 144
           GGA Y  RT EEVFRD +GRRAGMI+ALTT +                            
Sbjct: 21  GGAPYATRTAEEVFRDLRGRRAGMIKALTTDV---------------------------- 80

Query: 145 RCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVRKY 204
                                      + F       ++              +C     
Sbjct: 81  ---------------------------EKFYKLCDPEKEN-------------LC----- 140

Query: 205 LQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAPQL 264
           L  + N+ W +TL        I  P L         + F    ++E + LA+ A  +   
Sbjct: 141 LYGYPNETWEVTLPAEEVPPEIPEPALG--------INFARDGMNEKDWLALVAVHSDSW 200

Query: 265 ---------------HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNK--S 324
                           +  +RLF MIN+LPTIFEVVTG+ KKQ K+K+  S++ SNK  S
Sbjct: 201 LLSVAFYFGARFGFDREARRRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSS 260

Query: 325 KMGPKGRGSESSKLSKGLAKDE-----DEGLDEEEEEHGETLCGACGENYASDEFWICCD 384
           K+  K      SKLS    KDE     DEG +EEE++H  TLCG CG N   DEFWICCD
Sbjct: 261 KVQSKAESRSKSKLS--APKDEEGSGDDEG-EEEEDDHDNTLCGTCGTNDGKDEFWICCD 271

Query: 385 ICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 398
            CEKW+HGKCVKITPARAEHIKQYKCP C+NKRAR
Sbjct: 321 NCEKWYHGKCVKITPARAEHIKQYKCPDCTNKRAR 271

[Close]

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot
Match: A2Y4R8 (PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19996 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-41
Identity = 126/330 (38.18%), Postives = 154/330 (46.67%), Query Frame = 0


Query: 83  MDGGAA--YNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFN 142
           MDGG+   Y  RT EEVFRDF+GRRAGMI+ALTT +                        
Sbjct: 1   MDGGSGGPYTSRTAEEVFRDFRGRRAGMIKALTTDV------------------------ 60

Query: 143 RFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICL 202
                                          + F       ++              +C 
Sbjct: 61  -------------------------------EKFYQLCDPEKEN-------------LC- 120

Query: 203 VRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELN----LLAV 262
               L  + N+ W +TL        I  P L        +     LA+  ++    LLAV
Sbjct: 121 ----LYGYPNETWEVTLPAEEVPPEIPEPALGINFARDGMNEKDWLALVAVHSDSWLLAV 180

Query: 263 AAASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNK--SKMGP 322
           A   A +     +  +RLF MIN+LPTIFEVVTG+ KKQ K+K+  S N  NK  SKM P
Sbjct: 181 AFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQP 240

Query: 323 KGRGSESSKLSKGLAKDEDEG----LDEEEEEHGETLCGACGENYASDEFWICCDICEKW 382
           +      +       KD+DE      DEEEEE   TLCG+CG N   DEFWICCD CE+W
Sbjct: 241 RPESHSKAPKPPAPPKDDDESGDEYADEEEEERDNTLCGSCGTNDGKDEFWICCDSCERW 257

Query: 383 FHGKCVKITPARAEHIKQYKCPSCSNKRAR 398
           +HGKCVKITPARAEHIK YKCP C NKRAR
Sbjct: 301 YHGKCVKITPARAEHIKHYKCPDCGNKRAR 257

[Close]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL
Match: A0A6J1DL70 (PHD finger protein ALFIN-LIKE 4-like OS=Momordica charantia OX=3673 GN=LOC111021932 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.3e-70
Identity = 173/324 (53.40%), Postives = 187/324 (57.72%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTT +                         F
Sbjct: 1   MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDV-----------------------EEF 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
             +C                                          ++L           
Sbjct: 61  YQQC--------------------------------------DPEKENLC---------- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMINDLPTIFEVVTG+VKKQGKDKSLV+NNSSNKSK G KGRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDLPTIFEVVTGNVKKQGKDKSLVTNNSSNKSKTGSKGRG 240

Query: 323 SESSKLSKGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 382
           SESSK  KGLAKDEDEG+DEE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK
Sbjct: 241 SESSKFPKGLAKDEDEGMDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 251

Query: 383 ITPARAEHIKQYKCPSCSNKRARP 399
           ITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 ITPARAEHIKQYKCPSCSNKRARP 251

[Close]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL
Match: A0A6J1KET6 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493665 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.0e-69
Identity = 169/317 (53.31%), Postives = 196/317 (61.83%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGG AYNPRTVEEVFRDFKGRRAGMIRALTT +V+    +        +   +G+ N  
Sbjct: 1   MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVE---FYQLCDPEKENLCLYGLPNE- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
            W     V+  A  +   +   A+ +  +++      +++K   S+ ++ +   L+ +  
Sbjct: 61  QWE----VNLPAEEVPPEVPEPALGINFARD-----GMQKKDWLSLVAVHSDAWLLAVAF 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAP 262
            +   F            GC K                                      
Sbjct: 121 YFGSRF------------GCDK-------------------------------------- 180

Query: 263 QLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLS 322
                 KRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSS+KS+ GPKGR SESSKLS
Sbjct: 181 ---SDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLS 240

Query: 323 KGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE 382
            GLAKDEDEGL+EE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE
Sbjct: 241 NGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE 251

Query: 383 HIKQYKCPSCSNKRARP 399
           HIKQYKCPSCSNKRARP
Sbjct: 301 HIKQYKCPSCSNKRARP 251

[Close]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL
Match: A0A6J1FGT0 (PHD finger protein ALFIN-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111444046 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.2e-69
Identity = 171/325 (52.62%), Postives = 187/325 (57.54%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTT +                         F
Sbjct: 1   MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDV-----------------------EEF 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
             +C                                          ++L           
Sbjct: 61  YQQC--------------------------------------DPEKENLC---------- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMIND+PTIFEVVTG VKKQGKDKSLVSNN SNKSK G KGRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNISNKSKTGSKGRG 240

Query: 323 SESSKLSKGLAKDEDEGL--DEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 382
           SE+SKLSKGLAK+EDEGL  +EEEEEHGETLCGACGENYASDEFWICCD+CEKWFHGKCV
Sbjct: 241 SEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCV 252

Query: 383 KITPARAEHIKQYKCPSCSNKRARP 399
           KITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 KITPARAEHIKQYKCPSCSNKRARP 252

[Close]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL
Match: A0A6J1G4T7 (PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450718 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-68
Identity = 168/317 (53.00%), Postives = 196/317 (61.83%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGG AYNPRTVEEVFRDFKGRRAGMIRALTT +V+    +        +   +G+ N  
Sbjct: 1   MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVE---FYQLCDPEKENLCLYGLPNE- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
            W     V+  A  +   +   A+ +  +++      +++K   S+ ++ +   L+ +  
Sbjct: 61  QWE----VNLPAEEVPPEVPEPALGINFARD-----GMQKKDWLSLVAVHSDAWLLAVAF 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASAP 262
            +   F            GC K                                      
Sbjct: 121 YFGSRF------------GCDK-------------------------------------- 180

Query: 263 QLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLS 322
                 KRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSS+KS+ GPKGR SESSKLS
Sbjct: 181 ---SDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLS 240

Query: 323 KGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE 382
            GLAKDED+GL+EE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE
Sbjct: 241 NGLAKDEDDGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAE 251

Query: 383 HIKQYKCPSCSNKRARP 399
           HIKQYKCPSCSNKRARP
Sbjct: 301 HIKQYKCPSCSNKRARP 251

[Close]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL
Match: A0A6J1HSJ7 (PHD finger protein ALFIN-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465768 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.5e-68
Identity = 171/325 (52.62%), Postives = 187/325 (57.54%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MD GAAYNPRTVEEVFRDFKGRRAGMIRALTT +                         F
Sbjct: 1   MDRGAAYNPRTVEEVFRDFKGRRAGMIRALTTDV-----------------------EEF 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
             +C                                          ++L           
Sbjct: 61  YQQC--------------------------------------DPEKENLC---------- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMIND+PTIFEVVTG VKKQGKDKSLVSNNSSNKSK G KGRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRG 240

Query: 323 SESSKLSKGLAKDEDEGL--DEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 382
           SE+SKLSKGLAK+EDEGL  +EEEEEHGETLCGACGENYASDEFWICCD+CEKWFHGKCV
Sbjct: 241 SEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCV 252

Query: 383 KITPARAEHIKQYKCPSCSNKRARP 399
           KITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 KITPARAEHIKQYKCPSCSNKRARP 252

[Close]

BLAST of Lsi11G001710 vs. NCBI nr
Match: KAG7030505.1 (PHD finger protein ALFIN-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.2 bits (801), Expect = 3.3e-81
Identity = 195/324 (60.19%), Postives = 208/324 (64.20%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGG AYNPRTVEEVFRDFKGRRAGMIRALTTGLVQS FSFSSSSIS             
Sbjct: 1   MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSHFSFSSSSIS------------- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
                                      MS NFISFATL  + S   +        +C   
Sbjct: 61  ---------------------------MSWNFISFATLLFQISEKEN--------LC--- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSF-IVMPGFLLY-FLSLAI--DELNLLAVAA 262
             L    N+ W + L        +  P L       G     +LSL     +  LLAVA 
Sbjct: 121 --LYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        +RLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSS+KS+ GPKGR 
Sbjct: 181 YFGSRFGCDKSDRRRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRD 240

Query: 323 SESSKLSKGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 382
           SESSKLS GLAKDEDEGL+EE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK
Sbjct: 241 SESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 271

Query: 383 ITPARAEHIKQYKCPSCSNKRARP 399
           ITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 ITPARAEHIKQYKCPSCSNKRARP 271

[Close]

BLAST of Lsi11G001710 vs. NCBI nr
Match: XP_038890757.1 (PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890759.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890760.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890761.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890762.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890763.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890764.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890765.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890766.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890767.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890768.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890769.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890770.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_038890771.1 PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 1.8e-71
Identity = 176/324 (54.32%), Postives = 189/324 (58.33%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGGAAYNPRTVEEVFRDFKGRRAGMIRALT  +                          
Sbjct: 1   MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTADV-------------------------- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
                                        + F       ++              +C   
Sbjct: 61  -----------------------------EEFYQLCDPEKEN-------------LC--- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMINDLPTIFEVVTGSVKKQGKDKS VSNNSSNKSKMGP+GRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSSVSNNSSNKSKMGPRGRG 240

Query: 323 SESSKLSKGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 382
           SESSKLSKGLAKDEDEGLDEE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK
Sbjct: 241 SESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 251

Query: 383 ITPARAEHIKQYKCPSCSNKRARP 399
           ITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 ITPARAEHIKQYKCPSCSNKRARP 251

[Close]

BLAST of Lsi11G001710 vs. NCBI nr
Match: KAG6599528.1 (PHD finger protein ALFIN-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.9 bits (712), Expect = 7.0e-71
Identity = 173/325 (53.23%), Postives = 200/325 (61.54%), Query Frame = 0


Query: 75  SGLWIPVNMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFS 134
           S  WI  NMDGG AYNPRTVEEVFRDFKGRRAGMIRALTT +V+    +        +  
Sbjct: 298 SRTWITENMDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVE---FYQLCDPEKENLC 357

Query: 135 SFGVFNRFSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNS 194
            +G+ N   W     V+  A  +   +   A+ +  +++      +++K   S+ ++ + 
Sbjct: 358 LYGLPNE-QWE----VNLPAEEVPPEVPEPALGINFARD-----GMQKKDWLSLVAVHSD 417

Query: 195 GRLICLVRKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLL 254
             L+ +   +   F            GC K                              
Sbjct: 418 AWLLAVAFYFGSRF------------GCDK------------------------------ 477

Query: 255 AVAAASAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGR 314
                         KRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSS+KS+ GPKGR
Sbjct: 478 -----------SDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGR 537

Query: 315 GSESSKLSKGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 374
            SESSKLS GLAKDEDEGL+EE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV
Sbjct: 538 DSESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 556

Query: 375 KITPARAEHIKQYKCPSCSNKRARP 399
           KITPARAEHIKQYKCPSCSNKRARP
Sbjct: 598 KITPARAEHIKQYKCPSCSNKRARP 556

[Close]

BLAST of Lsi11G001710 vs. NCBI nr
Match: XP_022154756.1 (PHD finger protein ALFIN-LIKE 4-like [Momordica charantia] >XP_022154758.1 PHD finger protein ALFIN-LIKE 4-like [Momordica charantia])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-69
Identity = 173/324 (53.40%), Postives = 187/324 (57.72%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTT +                         F
Sbjct: 1   MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDV-----------------------EEF 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
             +C                                          ++L           
Sbjct: 61  YQQC--------------------------------------DPEKENLC---------- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMINDLPTIFEVVTG+VKKQGKDKSLV+NNSSNKSK G KGRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDLPTIFEVVTGNVKKQGKDKSLVTNNSSNKSKTGSKGRG 240

Query: 323 SESSKLSKGLAKDEDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 382
           SESSK  KGLAKDEDEG+DEE EEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK
Sbjct: 241 SESSKFPKGLAKDEDEGMDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVK 251

Query: 383 ITPARAEHIKQYKCPSCSNKRARP 399
           ITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 ITPARAEHIKQYKCPSCSNKRARP 251

[Close]

BLAST of Lsi11G001710 vs. NCBI nr
Match: XP_023537397.1 (PHD finger protein ALFIN-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023537398.1 PHD finger protein ALFIN-LIKE 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 3.8e-69
Identity = 172/325 (52.92%), Postives = 188/325 (57.85%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTT +                         F
Sbjct: 1   MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDV-----------------------EEF 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
             +C                                          ++L           
Sbjct: 61  YQQC--------------------------------------DPEKENLC---------- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L  F N+ W + L        +  P L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLFTMIND+PTIFEVVTG VKKQGKDKSLVSNNSSNKSK G KGRG
Sbjct: 181 YFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRG 240

Query: 323 SESSKLSKGLAKDEDEGL--DEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 382
           SE+SKLSKGLAK+EDEGL  +EEEEEHGETLCGACGENYASDEFWICCD+CEKWFHGKCV
Sbjct: 241 SEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCV 252

Query: 383 KITPARAEHIKQYKCPSCSNKRARP 399
           KITPARAEHIKQYKCPSCSNKRARP
Sbjct: 301 KITPARAEHIKQYKCPSCSNKRARP 252

[Close]

BLAST of Lsi11G001710 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 215.3 bits (547), Expect = 8.8e-56
Identity = 148/328 (45.12%), Postives = 174/328 (53.05%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           M+ G AYNPRTVEEVFRDFKGRRAGMI+ALTT +                          
Sbjct: 1   MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDV-------------------------- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLVR 202
                                        + F       ++              +C   
Sbjct: 61  -----------------------------QEFFRLCDPEKEN-------------LC--- 120

Query: 203 KYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLY--FLSLAI--DELNLLAVAA 262
             L    N+HW + L        +  P+L        +    +LSL     +  LLAVA 
Sbjct: 121 --LYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAF 180

Query: 263 ASAPQL---HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRG 322
               +        KRLF M+NDLPTIFEVV G+ KKQGKDKS VSNNSSN+SK   K RG
Sbjct: 181 FFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK-RG 240

Query: 323 SES-SKLSKGLAKD----EDEGLDEE-EEEHGETLCGACGENYASDEFWICCDICEKWFH 382
           SES +K SK   KD    E+EG++EE E+E GET CGACGE+YA+DEFWICCD+CE WFH
Sbjct: 241 SESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFH 254

Query: 383 GKCVKITPARAEHIKQYKCPSCSNKRAR 398
           GKCVKITPARAEHIKQYKCPSCSNKRAR
Sbjct: 301 GKCVKITPARAEHIKQYKCPSCSNKRAR 254

[Close]

BLAST of Lsi11G001710 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-50
Identity = 132/341 (38.71%), Postives = 168/341 (49.27%), Query Frame = 0


Query: 83  MDGGAA-YNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNR 142
           M+GG A Y+PRTVEEVFRDFKGRRAG+I+ALTT +                         
Sbjct: 1   MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDV------------------------- 60

Query: 143 FSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLV 202
                                         ++F       ++              +C  
Sbjct: 61  ------------------------------EDFFQQCDPEKQN-------------LC-- 120

Query: 203 RKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASA 262
              L  F N+ W + L        +  P L         + F    + E N L++ A  +
Sbjct: 121 ---LYGFPNEVWEVNLPAEEVPPELPEPALG--------INFARDGMQERNWLSLVAVHS 180

Query: 263 PQL---------------HDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNK 322
                                 KRLF+MIN++PT++EVVTG+ +KQ K+    +N + N+
Sbjct: 181 DAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNR 240

Query: 323 SKMGPKGRGSESSKLSKGLAKDEDEGL---------DEEEEEHGETLCGACGENYASDEF 382
           SK   K RG ES       AKDE+EGL         DE+E+EHGETLCGACG+NYASDEF
Sbjct: 241 SKSNSKMRGLESKSSKTIHAKDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEF 260

Query: 383 WICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 399
           WICCD+CEKWFHG+CVKITPARAEHIK YKCP+CSNKRARP
Sbjct: 301 WICCDMCEKWFHGECVKITPARAEHIKHYKCPTCSNKRARP 260

[Close]

BLAST of Lsi11G001710 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-46
Identity = 131/317 (41.32%), Postives = 168/317 (53.00%), Query Frame = 0


Query: 83  MDGGAA-YNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNR 142
           M+GGAA YNPRTVEEVF+DFKGRR  +++ALTT + +    +        +   +G+ N 
Sbjct: 1   MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQE---FYQQCDPEKENLCLYGLPNE 60

Query: 143 FSWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFATLRRKTSASMDSLMNSGRLICLV 202
             W     V+  A  +   L   A+ +  +++ +S      K   S              
Sbjct: 61  -EWE----VNLPAEEVPPELPEPALGINFARDGLS-----EKEWLS-------------- 120

Query: 203 RKYLQSFRNQHWALTLLEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAASA 262
              L +  +  W L+              +SF     F  +                   
Sbjct: 121 ---LVAIHSDAWLLS--------------VSFYFGSRFSFH------------------- 180

Query: 263 PQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKL 322
               +  KRLF MIND+PTIFEVVTG  K   KDKS  +N + NKSK   K R SE    
Sbjct: 181 ---KEERKRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEGKSS 240

Query: 323 SKGLAKDEDEGLDE-EEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARA 382
                K+EDE +DE +E++HGETLCGACG++  +DEFWICCD+CEKWFHGKCVKITPARA
Sbjct: 241 KTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARA 249

Query: 383 EHIKQYKCPSCSNKRAR 398
           EHIKQYKCPSCSNKRAR
Sbjct: 301 EHIKQYKCPSCSNKRAR 249

[Close]

BLAST of Lsi11G001710 vs. TAIR 10
Match: AT2G02470.1 (alfin-like 6 )

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-40
Identity = 125/327 (38.23%), Postives = 164/327 (50.15%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           M+G     PRTVEEVF DF+GRRAG+I+ALT  +V+    + +      +   +G+ N  
Sbjct: 1   MEGITHPIPRTVEEVFSDFRGRRAGLIKALTNDMVK---FYQTCDPEKENLCLYGLPNE- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFAT--LRRKTSASMDSLMNSGRLICL 202
           +W   L V             +   L      I+FA   ++ K   S             
Sbjct: 61  TWEVNLPVE-----------EVPPELPEPALGINFARDGMQEKDWVS------------- 120

Query: 203 VRKYLQSFRNQHWALTL-LEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAA 262
               L +  +  W L++    G +   G                                
Sbjct: 121 ----LVAVHSDSWLLSVAFYFGARFGFG-------------------------------- 180

Query: 263 SAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSES- 322
                 +  KRLF MIN+LPTIFEVV+G+  KQ KD S V+NN+S     G K R SES 
Sbjct: 181 -----KNERKRLFQMINELPTIFEVVSGNA-KQSKDLS-VNNNNSKSKPSGVKSRQSESL 240

Query: 323 SKLSKGLA-------KDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGK 382
           SK++K  +       ++EDE  DE E++    +CGACG+NY +DEFWICCD CEKWFHGK
Sbjct: 241 SKVAKMSSPPPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGK 256

Query: 383 CVKITPARAEHIKQYKCPSCSNKRARP 399
           CVKITPA+AEHIK YKCP+CSNKRARP
Sbjct: 301 CVKITPAKAEHIKHYKCPTCSNKRARP 256

[Close]

BLAST of Lsi11G001710 vs. TAIR 10
Match: AT2G02470.2 (alfin-like 6 )

HSP 1 Score: 160.2 bits (404), Expect = 3.4e-39
Identity = 120/319 (37.62%), Postives = 158/319 (49.53%), Query Frame = 0


Query: 83  MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSPFSFSSSSISGFSFSSFGVFNRF 142
           M+G     PRTVEEVF DF+GRRAG+I+ALT  +V+    + +      +   +G+ N  
Sbjct: 1   MEGITHPIPRTVEEVFSDFRGRRAGLIKALTNDMVK---FYQTCDPEKENLCLYGLPNE- 60

Query: 143 SWRCTLLVSFSAGCLVILLFSLAIFLQMSKNFISFAT--LRRKTSASMDSLMNSGRLICL 202
           +W   L V             +   L      I+FA   ++ K   S             
Sbjct: 61  TWEVNLPVE-----------EVPPELPEPALGINFARDGMQEKDWVS------------- 120

Query: 203 VRKYLQSFRNQHWALTL-LEMGCKKRIGYPLLSFIVMPGFLLYFLSLAIDELNLLAVAAA 262
               L +  +  W L++    G +   G                                
Sbjct: 121 ----LVAVHSDSWLLSVAFYFGARFGFG-------------------------------- 180

Query: 263 SAPQLHDTTKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESS 322
                 +  KRLF MIN+LPTIFEVV+G+  KQ KD S+  NN+++KSK         SS
Sbjct: 181 -----KNERKRLFQMINELPTIFEVVSGNA-KQSKDLSV--NNNNSKSKPSGVKVAKMSS 240

Query: 323 KLSKGLAKDEDEGLDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPAR 382
              K   ++EDE  DE E++    +CGACG+NY +DEFWICCD CEKWFHGKCVKITPA+
Sbjct: 241 PPPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAK 247

Query: 383 AEHIKQYKCPSCSNKRARP 399
           AEHIK YKCP+CSNKRARP
Sbjct: 301 AEHIKHYKCPTCSNKRARP 247

The following BLAST results are available for this feature:

BLAST of Lsi11G001710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81488	1.2e-54	45.12	PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2	[more]
Q5XEM9	2.7e-49	38.71	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1	[more]
Q9M2B4	3.1e-45	41.32	PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1	[more]
Q7F2Z1	5.4e-42	37.61	PHD finger protein ALFIN-LIKE 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01...	[more]
A2Y4R8	1.6e-41	38.18	PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19...	[more]

BLAST of Lsi11G001710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL70	8.3e-70	53.40	PHD finger protein ALFIN-LIKE 4-like OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1KET6	7.0e-69	53.31	PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FGT0	9.2e-69	52.62	PHD finger protein ALFIN-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A6J1G4T7	1.6e-68	53.00	PHD finger protein ALFIN-LIKE 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HSJ7	3.5e-68	52.62	PHD finger protein ALFIN-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465768...	[more]

BLAST of Lsi11G001710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030505.1	3.3e-81	60.19	PHD finger protein ALFIN-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_038890757.1	1.8e-71	54.32	PHD finger protein ALFIN-LIKE 4-like isoform X1 [Benincasa hispida] >XP_03889075...	[more]
KAG6599528.1	7.0e-71	53.23	PHD finger protein ALFIN-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022154756.1	1.7e-69	53.40	PHD finger protein ALFIN-LIKE 4-like [Momordica charantia] >XP_022154758.1 PHD f...	[more]
XP_023537397.1	3.8e-69	52.92	PHD finger protein ALFIN-LIKE 4-like [Cucurbita pepo subsp. pepo] >XP_023537398....	[more]

BLAST of Lsi11G001710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26210.1	8.8e-56	45.12	alfin-like 4	[more]
AT5G20510.1	1.9e-50	38.71	alfin-like 5	[more]
AT3G42790.1	2.2e-46	41.32	alfin-like 3	[more]
AT2G02470.1	3.0e-40	38.23	alfin-like 6	[more]
AT2G02470.2	3.4e-39	37.62	alfin-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 344..392 e-value: 2.1E-9 score: 47.2
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 345..393 e-value: 3.6E-10 score: 39.6
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 342..394 score: 9.5256
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 335..393 e-value: 6.6E-26 score: 91.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..336
None	No IPR available	PANTHER	PTHR12321:SF141	PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1	coord: 85..115
None	No IPR available	PANTHER	PTHR12321:SF141	PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1	coord: 267..398
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 267..398
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 85..115
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 345..391
IPR044104	Alfin1-like, PHD finger	CDD	cd15613	PHD_AL_plant	coord: 344..394 e-value: 2.79881E-33 score: 116.826
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 334..395

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001710.1	Lsi11G001710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0042393	histone binding