Lsi11G001680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II PsbX
Location	chr11: 1779479 .. 1779856 (-)
RNA-Seq Expression	Lsi11G001680
Synteny	Lsi11G001680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCGATTACTAATGCGGCTCAGAAGAGAGCGAGGAAGGTCGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCGTCCAACAAGCCAACAAGTGCTTCAGCTTCGTCAAACTCCAGCGCCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTACCTGAGGTAGCTGAAGCTGCTGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCTGGTGGAGTAGTTGTCACTGCTATCGTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCTGTCAAGCGTACCTGA

mRNA sequence

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCGATTACTAATGCGGCTCAGAAGAGAGCGAGGAAGGTCGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCGTCCAACAAGCCAACAAGTGCTTCAGCTTCGTCAAACTCCAGCGCCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTACCTGAGGTAGCTGAAGCTGCTGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCTGGTGGAGTAGTTGTCACTGCTATCGTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCTGTCAAGCGTACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCTGCAGTTTCAATGGCGATGCCGATTACTAATGCGGCTCAGAAGAGAGCGAGGAAGGTCGAAGCCTTTGCCAAGCCATTGCCTTTGAGGCCGTCCAACAAGCCAACAAGTGCTTCAGCTTCGTCAAACTCCAGCGCCAAGTTTCAAGTGCGAGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCAACTGCACTGACGGCTTCCATGGTGCTACCTGAGGTAGCTGAAGCTGCTGGGCCTGGAGTTAGTCCTTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCTGGTGGAGTAGTTGTCACTGCTATCGTGGGTGCAGTTATTGGCGTCGCCAATTTCGATCCTGTCAAGCGTACCTGA

Protein sequence

MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFDPVKRT

Homology

[Close]

BLAST of Lsi11G001680 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. ExPASy TrEMBL
Match: A0A1S3CAS0 (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SM MPITNAAQKR R+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.6e-46
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GA+IGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.9e-45
Identity = 112/125 (89.60%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AI+GA+IGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 117/125 (93.60%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR  EAFAKPLPLRPSNKP   +ASSNSSAKFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKPLPLRPSNKP---NASSNSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. NCBI nr
Match: XP_011648590.1 (uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical protein Csa_019271 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 3.2e-46
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SMAMPITNAAQKRAR+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. NCBI nr
Match: XP_008459641.1 (PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-46
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+SM MPITNAAQKR R+ EAFAKPLPLRPSNKP   S SS+SSAKFQVRASLKE
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKP---SGSSSSSAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GAVIGVANFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSAVSMAMPITNA QKRAR  +AFAK LPLRPSNKPT   ASSNS AKFQVRASLKE
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPT---ASSNSRAKFQVRASLKE 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI+GA+IGV+NFD
Sbjct: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFD 120

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 122

[Close]

BLAST of Lsi11G001680 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-26
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNAAQKRARKVEAFAKPLPLRPSNKPTSASASSNSSAKFQVRASLKE 60
           MASTSA+S+  P+         +   F KPLPL+PS    +  A+   + + QV+A   +
Sbjct: 1   MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSK---ALVATGGRAQRLQVKALKMD 60

Query: 61  KAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAIVGAVIGVANFD 120
           KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+T I+G V+GV+NFD
Sbjct: 61  KALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFD 116

Query: 121 PVKRT 126
           PVKRT
Sbjct: 121 PVKRT 116

The following BLAST results are available for this feature:

BLAST of Lsi11G001680 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G001680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6L0	1.8e-47	92.80	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LIL7	1.5e-46	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]
A0A1S3CAS0	2.0e-46	91.20	uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=...	[more]
A0A6J1G4H3	7.6e-46	90.40	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	2.9e-45	89.60	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]

BLAST of Lsi11G001680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890010.1	2.2e-47	93.60	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
KAA0061475.1	3.8e-47	92.80	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]
XP_011648590.1	3.2e-46	92.00	uncharacterized protein LOC105434533 [Cucumis sativus] >KGN60517.1 hypothetical ...	[more]
XP_008459641.1	4.2e-46	91.20	PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]	[more]
XP_022946746.1	1.6e-45	90.40	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]

BLAST of Lsi11G001680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	3.9e-26	54.40	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 88..125 e-value: 5.7E-16 score: 58.2
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 87..125 e-value: 3.8E-10 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..49
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001680.1	Lsi11G001680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding