Lsi10G015440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G015440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	floral homeotic protein AGAMOUS-like
Location	chr10: 19860575 .. 19861966 (-)
RNA-Seq Expression	Lsi10G015440
Synteny	Lsi10G015440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATTTTCCTATATGTGCAGAATGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGGTATGTATAACTCAAAAAAATTTAAAAATATATATATACATTTACACATTTAGAAATAATCTCGTACTTGTAAATTACATTTAGCAATTCAATTTTTGTGGGCAGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCCCAGGTCAAATTCTCAACTTTTATACAAAATACCCTTTTCTAACTTTGGAATTTATTATAATTATGTCCAAACTTTAAAAACTTTTTATTTTTACCCTTCTAACTTTAAAAATGGTTCAAAAATATATTTTTAGAGGAGCGTTTGGCTCACTGAATGAAGTTAATAAGTCTAAAGTTAATATGTTGAAGTTAGTAAATTTGCGTTTGAAGTGTAGAGTTCTTCGATAATTGTAAAAGGTAGATTAAGAAAGTAAGAGAGAGTTTCTTGATAAATATCAAAAGTAGAGATAGAGGGGAATGAAATTCTGGGTAAATGTGAAATGTACAAAAAAAAAAAAAATGAGAAGATGAAGTTACTCGATAAATGTGCAAGTTTAATAGTGTTTACTATTGAAGTTGAGTTATTTACACCAACTTAAGAAGTTGGTGGGTCAAACGGTCCCTCAGAGTTTCCTTTTTTCTCTTTTAGAATATTGATACAACAGTAAACGTATAAAAATTGAAAGACATATATAATTATCATTATTGATATGACAAATAATGTATTTAAATTGATTATGTAGATGATTCTAACAATTATCTTTATATAATAGAAATAAATGGTCACAACAACGATTTTAATATCTTCTATATAGTTTTAAATTAGGAGAAATACTTGTTGCACTCATCTTTTGGCACATGACAAATATTTGTTGGATAACTGGATAGGCTGCACAAAAATAGGTGCAGATCAAGATGCACCAAAGTATTTTTCTTTAAAACTGTCGTTGTTGCAGTAATTTATGACCTTATGAAATCTGTCAGTTAGAATTTAGAGCTACAATTTTACTTTTGATGGATATAGAAATTGTGTTGTTACAAAAAAAAAGCTATTCTCGGGAATAATCGTTAGGGACATAATTGAAACGAAATGTAATGTTGAGAGATATTTTGTATAACTTAACCCAAAAAAGGAAAATTTAACCATATTTTTTGTCGTTTTTTATAGATTGCTGAACACGAAAGAATACAACAACAGCAACAGCAACAGCAACAACAACAAACGAATATGATGCAAAGGGCAACATATGAGAGTGTGGAAGGGCAATACGATGAGAATAGAACTTATGGGGCTATGGGGCTTATGGATTCAGACACTCATTATGCCCATCAAGATCATCTCACTGCTCTTCAGCTTGTTTAA

mRNA sequence

ATGGTCATTTTCCTATATGTGCAGAATGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGCAACAGCAACAGCAACAACAACAAACGAATATGATGCAAAGGGCAACATATGAGAGTGTGGAAGGGCAATACGATGAGAATAGAACTTATGGGGCTATGGGGCTTATGGATTCAGACACTCATTATGCCCATCAAGATCATCTCACTGCTCTTCAGCTTGTTTAA

Coding sequence (CDS)

ATGGTCATTTTCCTATATGTGCAGAATGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGCAACAGCAACAGCAACAACAACAAACGAATATGATGCAAAGGGCAACATATGAGAGTGTGGAAGGGCAATACGATGAGAATAGAACTTATGGGGCTATGGGGCTTATGGATTCAGACACTCATTATGCCCATCAAGATCATCTCACTGCTCTTCAGCTTGTTTAA

Protein sequence

MVIFLYVQNETLCAEMEFMQKRQQQQQQQQTNMMQRATYESVEGQYDENRTYGAMGLMDSDTHYAHQDHLTALQLV

Homology

[Close]

BLAST of Lsi10G015440 vs. ExPASy TrEMBL
Match: A0A6J1FYQ9 (floral homeotic protein AGAMOUS-like OS=Cucurbita moschata OX=3662 GN=LOC111448972 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQ 67
           +NETLCAEMEFMQKR+                     QQQQQQQTNMMQR TYE+V  GQ
Sbjct: 143 KNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIPQQQQQQQTNMMQRGTYETVGGGQ 202

Query: 68  YDENRTYGAMGLMDSDTHYAHQDHLTALQLV 77
           Y+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Sbjct: 203 YEENRSYGGVGLMDSDTHYAHQDHLTALQLV 233

[Close]

BLAST of Lsi10G015440 vs. ExPASy TrEMBL
Match: A0A5A7UMA9 (Floral homeotic protein AGAMOUS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00050 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.6e-16
Identity = 63/94 (67.02%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQ 67
           +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQ
Sbjct: 62  KNETLFAEMEFMQKREVELQSHNNYLRAQIAEHERIQQQQQQQQQTNMMQRATYESVGGQ 121

Query: 68  Y-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV 77
           Y DENR TYGA+G LMDSD+HYA QDHLTALQLV
Sbjct: 122 YDDENRSTYGAVGALMDSDSHYAPQDHLTALQLV 155

[Close]

BLAST of Lsi10G015440 vs. ExPASy TrEMBL
Match: Q9ARE9 (MADS1 protein OS=Cucumis sativus OX=3659 GN=m1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.6e-16
Identity = 63/94 (67.02%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQ 67
           +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQ
Sbjct: 143 KNETLFAEMEFMQKREMELQSHNNYLRAQIAEHERIQQQQQQQQQTNMMQRATYESVGGQ 202

Query: 68  Y-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV 77
           Y DENR TYGA+G LMDSD+HYA QDHLTALQLV
Sbjct: 203 YDDENRSTYGAVGALMDSDSHYAPQDHLTALQLV 236

[Close]

BLAST of Lsi10G015440 vs. ExPASy TrEMBL
Match: A0A0A0KC22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G177190 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.6e-16
Identity = 63/94 (67.02%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQ 67
           +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQ
Sbjct: 224 KNETLFAEMEFMQKREMELQSHNNYLRTQIAEHERIQQQQQQQQQTNMMQRATYESVGGQ 283

Query: 68  Y-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV 77
           Y DENR TYGA+G LMDSD+HYA QDHLTALQLV
Sbjct: 284 YDDENRSTYGAVGALMDSDSHYAPQDHLTALQLV 317

[Close]

BLAST of Lsi10G015440 vs. ExPASy TrEMBL
Match: A0A1S3C3D0 (floral homeotic protein AGAMOUS OS=Cucumis melo OX=3656 GN=LOC103496392 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15
Identity = 61/93 (65.59%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQ 67
           +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQ
Sbjct: 92  KNETLFAEMEFMQKREVELQSHNNYLRAQIAEHERIQQQQQQQQQTNMMQRATYESVGGQ 151

Query: 68  Y-DENR-TYGAMG-LMDSDTHYAHQDHLTALQL 76
           Y DENR TYGA+G LMDSD+HYA QDHLTALQ+
Sbjct: 152 YDDENRSTYGAVGALMDSDSHYAPQDHLTALQV 184

[Close]

BLAST of Lsi10G015440 vs. NCBI nr
Match: XP_038900672.1 (agamous-like MADS-box protein MADS1 [Benincasa hispida] >XP_038900673.1 agamous-like MADS-box protein MADS1 [Benincasa hispida] >XP_038900675.1 agamous-like MADS-box protein MADS1 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESVEGQY 67
           +NETLCAEMEFMQKR                     QQQQQQQQTNMMQRATYE+V GQY
Sbjct: 143 KNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRATYETVGGQY 202

Query: 68  -DENRTYGAMGLMDSDTHYAHQDHLTALQLV 77
            D+NR+YGA+GLMDSDTHYAHQDHLTALQLV
Sbjct: 203 DDQNRSYGAVGLMDSDTHYAHQDHLTALQLV 233

[Close]

BLAST of Lsi10G015440 vs. NCBI nr
Match: KAG6570568.1 (Agamous-like MADS-box protein MADS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-19
Identity = 61/91 (67.03%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR---------------------QQQQQQQQTNMMQRATYESV-EGQ 67
           +NETLCAEMEFMQKR                     QQQQQQQQTNMMQR TYE+V  GQ
Sbjct: 143 KNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRGTYETVGGGQ 202

Query: 68  YDENRTYGAMGLMDSDTHYAHQDHLTALQLV 77
           Y+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Sbjct: 203 YEENRSYGGVGLMDSDTHYAHQDHLTALQLV 233

[Close]

BLAST of Lsi10G015440 vs. NCBI nr
Match: XP_022944555.1 (floral homeotic protein AGAMOUS-like [Cucurbita moschata])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKRQ---------------------QQQQQQQTNMMQRATYESV-EGQ 67
           +NETLCAEMEFMQKR+                     QQQQQQQTNMMQR TYE+V  GQ
Sbjct: 143 KNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIPQQQQQQQTNMMQRGTYETVGGGQ 202

Query: 68  YDENRTYGAMGLMDSDTHYAHQDHLTALQLV 77
           Y+ENR+YG +GLMDSDTHYAHQDHLTALQLV
Sbjct: 203 YEENRSYGGVGLMDSDTHYAHQDHLTALQLV 233

[Close]

BLAST of Lsi10G015440 vs. NCBI nr
Match: XP_023512279.1 (agamous-like MADS-box protein AGL1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 54/85 (63.53%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKRQQQ------------------QQQQQTNMMQRATYESV-EGQYDE 67
           +NETLCAEMEFMQKR+ +                  QQQQQTNMMQR TYE+V  GQY+E
Sbjct: 143 KNETLCAEMEFMQKREMELQNHNNYLQAQIAEHERIQQQQQTNMMQRGTYETVGGGQYEE 202

Query: 68  NRTYGAMGLMDSDTHYAHQDHLTAL 74
           NR+YG +GLMDSDTHYAHQDHLT L
Sbjct: 203 NRSYGGVGLMDSDTHYAHQDHLTLL 227

[Close]

BLAST of Lsi10G015440 vs. NCBI nr
Match: KAA0054569.1 (floral homeotic protein AGAMOUS [Cucumis melo var. makuwa] >TYK20388.1 floral homeotic protein AGAMOUS [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 63/94 (67.02%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 8   QNETLCAEMEFMQKR----------------------QQQQQQQQTNMMQRATYESVEGQ 67
           +NETL AEMEFMQKR                      QQQQQQQQTNMMQRATYESV GQ
Sbjct: 62  KNETLFAEMEFMQKREVELQSHNNYLRAQIAEHERIQQQQQQQQQTNMMQRATYESVGGQ 121

Query: 68  Y-DENR-TYGAMG-LMDSDTHYAHQDHLTALQLV 77
           Y DENR TYGA+G LMDSD+HYA QDHLTALQLV
Sbjct: 122 YDDENRSTYGAVGALMDSDSHYAPQDHLTALQLV 155

The following BLAST results are available for this feature:

BLAST of Lsi10G015440 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G015440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYQ9	4.8e-19	65.93	floral homeotic protein AGAMOUS-like OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A5A7UMA9	8.6e-16	67.02	Floral homeotic protein AGAMOUS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
Q9ARE9	8.6e-16	67.02	MADS1 protein OS=Cucumis sativus OX=3659 GN=m1 PE=2 SV=1	[more]
A0A0A0KC22	8.6e-16	67.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G177190 PE=4 SV=1	[more]
A0A1S3C3D0	7.2e-15	65.59	floral homeotic protein AGAMOUS OS=Cucumis melo OX=3656 GN=LOC103496392 PE=4 SV=...	[more]

BLAST of Lsi10G015440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900672.1	4.1e-20	69.23	agamous-like MADS-box protein MADS1 [Benincasa hispida] >XP_038900673.1 agamous-...	[more]
KAG6570568.1	4.5e-19	67.03	Agamous-like MADS-box protein MADS1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022944555.1	1.0e-18	65.93	floral homeotic protein AGAMOUS-like [Cucurbita moschata]	[more]
XP_023512279.1	4.6e-16	63.53	agamous-like MADS-box protein AGL1 [Cucurbita pepo subsp. pepo]	[more]
KAA0054569.1	1.8e-15	67.02	floral homeotic protein AGAMOUS [Cucumis melo var. makuwa] >TYK20388.1 floral ho...	[more]

BLAST of Lsi10G015440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G015440.1	Lsi10G015440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds